Rroxscaffold_3G00260770
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015660
Physical Location & Seq
Reverse (-)
55093071 .. 55099521
6451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260770.1

Sequence Viewer

Length: 1332 bp
ATGCTTTCTAGAGCCTTGACAGTAACCAGAAAGAGCCCTAAGGATGGCGACTACGTCCGTGACCTCGGCTGCAGCAAATCGGGCTCCTTCAACGACTACGAGGACTGCATCGTCGGCTTCATGGAGGATCTGCCACTCGTCCACTGCGACCACGACAAGAAGTGCGGGGGATGTGTGGAGAGCCTGGCACACCTAACCCTAAGGGGTGTGCTTAGAGGCTCGGTGGGTGTGATCGGAGAGAGCCGGTTGGCGATGACGGAGAAGGTGGTGCTCTTGGGAGGGAGGGTGTGTGCGGTGAAGAGGTTTAGGCAGGTCAGGGTTGGGAGGCGCGAGTTTGGGAAGAGAATACAGAGGTTGGCTGAGGTGAGTCGGAAGTGTGAGTTTCTGGTTCCTGTCACTGCTTACTTGTTTGCTAAGAGGATCAAGTTTGTGCTCTCAGATTATCGCCCCATGGGAAGCCTCGCTGACTTGCTTGCCGGTGCGAGGGATCATGGTCACACGGCACTGGTTTGGAACCAAAGGCTGACCATAATTTTCCATATTTCTAGAGCAATATCATTTATCCATACACAACATCCTCCATACCAAAAGAACATGATGATGCACATCCACGGCAGCATCAAGGCCTCAAACGTATTAGTGAACATCGACTTCTCAGCCTGCTTATCCGATTACGGGTTCACCCAATTGGCGGAGCAAGTTGAGATTCCGGAAACATGGCAGGTGATGAAGTCGCCCTTCTGGCTGGTGGAAGAGACCAATTACTCTGACGAGTTGAACCAGAAGGCTGACATTTACAACTTTGGGGTAATACTGCTGGACGTTTTAGCAGGTCCCAGGGGTTTGAGTCTGATGAAAAAGGGGGCAAAGGAGAAGAAGGAAGCCATGAAATTTTCTGGGTTGGACTTGGTTGAGTTTGGTATGAAGGATGCGAAAGAAAGGAGGCAAGTATCAAAGGTCTTCGACATTGCCGTGGCATGTACGAATGCCAAACGGGAGATTAGGCCTACAATAGATGAGATTTATAATGATATCGTGGGGATAATAAAGAAAGGGACGTCAAATGAGCTTGATCTGTATCTAAGCCGGAAGCATGATGAGCTATTGGAAAGCACCCTTGAACCAGGAACTTACAGGAAGACATTGTCTCTGGTTATTGTTGATGGTTTTGCTGTGGAAATTACTGAGGACCAGGCAAGCAAGCTTAGATCAGCAAAGGAAGTGAGATTGACTTTCTCAGACTTGGCTGATTTTTCCAGCTGCCAGCCACTAACACTTGGACACAGCTCGCTCGCTGTCAATTTTGGAGATTACAATTTTAACTCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

443

Amino Acids

49.66

Weight (kDa)

8.54

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 88 - 343 5.4e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 96 - 344 6.4e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26430
malus_domestica MD06G1104800.v1.1 MD14G1123700.v1.1
prunus_persica Prupe.5G117400_v2.0.a1
pyrus_communis pycom06g09930
rosa_chinensis RchiOBHm_Chr7g0195111
rosa_laevigata RLG00000004145
rosa_multiflora Rmu_co8510033.1_g000001 Rmu_sc0002381.1_g000031
rosa_roxburghii Rroxscaffold_3G00260770
rosa_rugosa Rorug07G0020900
rosa_samantha Rh7AG148200 Rh7BG149000 Rh7CG152400 Rh7DG149300
rosa_wichuraiana Rw7G012650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AarI CACCTGC 1 cut(s) 712
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 1 cut(s) 1061
Acc36I ACCTGC 3 cut(s) 301, 712, 821
AccII CGCG 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 3 cut(s) 165, 293, 692
AclWI GGATC 3 cut(s) 135, 428, 495
AcsI RAATTY 1 cut(s) 890
AcyI GRCGYC 1 cut(s) 1058
AfaI GTAC 1 cut(s) 982
AfiI CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
AgsI TTSAA 3 cut(s) 91, 778, 1121
AjnI CCWGG 4 cut(s) 183, 836, 1123, 1191
AluBI AGCT 5 cut(s) 1069, 1102, 1204, 1260, 1287
AluI AGCT 5 cut(s) 1069, 1102, 1204, 1260, 1287
Alw21I GWGCWC 2 cut(s) 273, 435
Alw26I GTCTC 2 cut(s) 749, 1152
AlwI GGATC 3 cut(s) 135, 428, 495
Ama87I CYCGRG 1 cut(s) 1324
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 2 cut(s) 624, 1004
ApeKI GCWGC 4 cut(s) 69, 72, 615, 1260
ApoI RAATTY 1 cut(s) 890
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 833, 1189
AsuHPI GGTGA 4 cut(s) 307, 376, 673, 736
AvaI CYCGRG 1 cut(s) 1324
AvaII GGWCC 2 cut(s) 833, 1189
AxyI CCTNAGG 2 cut(s) 39, 200
BanII GRGCYC 2 cut(s) 38, 86
BbsI GAAGAC 2 cut(s) 952, 1145
Bbv12I GWGCWC 2 cut(s) 273, 435
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 4 cut(s) 56, 84, 627, 1247
BccI CCATC 2 cut(s) 38, 1157
BceAI ACGGC 3 cut(s) 516, 628, 956
BciT130I CCWGG 4 cut(s) 185, 838, 1125, 1193
BcoDI GTCTC 2 cut(s) 749, 1152
BfaI CTAG 2 cut(s) 9, 546
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 3 cut(s) 301, 712, 821
BglI GCCNNNNNGGC 1 cut(s) 742
BisI GCNGC 4 cut(s) 70, 73, 616, 1261
BlsI GCNGC 4 cut(s) 71, 74, 617, 1262
Bme1390I CCNGG 4 cut(s) 185, 838, 1125, 1193
Bme18I GGWCC 2 cut(s) 833, 1189
BmeT110I CYCGRG 1 cut(s) 1324
BmgT120I GGNCC 2 cut(s) 833, 1189
BmiI GGNNCC 4 cut(s) 85, 390, 515, 835
BmrFI CCNGG 4 cut(s) 185, 838, 1125, 1193
BmsI GCATC 4 cut(s) 117, 591, 627, 919
BpiI GAAGAC 2 cut(s) 952, 1145
Bpu10I CCTNAGC 1 cut(s) 360
BsaBI GATNNNNATC 2 cut(s) 605, 1077
BsaHI GRCGYC 1 cut(s) 1058
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 6 cut(s) 64, 450, 610, 836, 837, 972
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 4 cut(s) 270, 274, 300, 304
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
Bse118I RCCGGY 2 cut(s) 243, 476
Bse1I ACTGG 1 cut(s) 510
Bse21I CCTNAGG 2 cut(s) 39, 200
Bse3DI GCAATG 1 cut(s) 966
Bse8I GATNNNNATC 2 cut(s) 605, 1077
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 4 cut(s) 185, 838, 1125, 1193
BseDI CCNNGG 6 cut(s) 64, 450, 610, 836, 837, 972
BseGI GGATG 5 cut(s) 49, 176, 574, 606, 934
BseJI GATNNNNATC 2 cut(s) 605, 1077
BseLI CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 5 cut(s) 351, 450, 669, 1176, 1251
BseNI ACTGG 1 cut(s) 510
BseXI GCAGC 4 cut(s) 56, 84, 627, 1247
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 626, 1006
BsiHKAI GWGCWC 2 cut(s) 273, 435
BsiHKCI CYCGRG 1 cut(s) 1324
BsiSI CCGG 4 cut(s) 244, 477, 710, 1087
BslFI GGGAC 2 cut(s) 819, 1069
BslI CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
BsmAI GTCTC 2 cut(s) 749, 1152
BsmFI GGGAC 2 cut(s) 819, 1069
BsmI GAATGC 1 cut(s) 991
BsnI GGCC 2 cut(s) 626, 1006
Bso31I GGTCTC 1 cut(s) 749
BsoBI CYCGRG 1 cut(s) 1324
Bsp1286I GDGCHC 4 cut(s) 38, 86, 273, 435
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 3 cut(s) 165, 293, 692
BspANI GGCC 2 cut(s) 626, 1006
BspCNI CTCAG 5 cut(s) 352, 449, 668, 1177, 1250
BspEI TCCGGA 1 cut(s) 709
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 4 cut(s) 85, 390, 515, 835
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 3 cut(s) 301, 712, 821
BspPI GGATC 3 cut(s) 135, 428, 495
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 966
BsrFI RCCGGY 2 cut(s) 243, 476
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 2 cut(s) 243, 476
BssECI CCNNGG 6 cut(s) 64, 450, 610, 836, 837, 972
BssMI GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
BssNI GRCGYC 1 cut(s) 1058
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 4 cut(s) 185, 838, 1125, 1193
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 3 cut(s) 293, 335, 747
BstACI GRCGYC 1 cut(s) 1058
BstC8I GCNNGC 7 cut(s) 474, 661, 1198, 1202, 1265, 1289, 1293
BstDSI CCRYGG 3 cut(s) 450, 610, 972
BstF5I GGATG 5 cut(s) 49, 176, 574, 606, 934
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 6 cut(s) 130, 234, 423, 490, 1075, 1211
BstMAI GTCTC 2 cut(s) 749, 1152
BstMBI GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
BstMWI GCNNNNNNNGC 4 cut(s) 81, 114, 742, 1099
BstNI CCWGG 4 cut(s) 185, 838, 1125, 1193
BstNSI RCATGY 1 cut(s) 981
BstSCI CCNGG 4 cut(s) 183, 836, 1123, 1191
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 56, 84, 627, 1247
BstV2I GAAGAC 2 cut(s) 952, 1145
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
Bsu36I CCTNAGG 2 cut(s) 39, 200
BsuRI GGCC 2 cut(s) 626, 1006
BtgI CCRYGG 3 cut(s) 450, 610, 972
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 5 cut(s) 49, 176, 574, 606, 934
BtsI GCAGTG 2 cut(s) 142, 396
BtsIMutI CAGTG 3 cut(s) 142, 396, 503
BveI ACCTGC 3 cut(s) 301, 712, 821
Cac8I GCNNGC 7 cut(s) 474, 661, 1198, 1202, 1265, 1289, 1293
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 2 cut(s) 243, 476
Cfr13I GGNCC 2 cut(s) 833, 1189
Csp6I GTAC 1 cut(s) 981
CviAII CATG 8 cut(s) 121, 451, 491, 595, 717, 886, 978, 1094
CviQI GTAC 1 cut(s) 981
DpnI GATC 6 cut(s) 129, 233, 422, 489, 1074, 1210
DpnII GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 3 cut(s) 293, 335, 747
EarI CTCTTC 3 cut(s) 293, 335, 747
EciI GGCGGA 1 cut(s) 707
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 2 cut(s) 626, 1006
Eco24I GRGCYC 2 cut(s) 38, 86
Eco31I GGTCTC 1 cut(s) 749
Eco32I GATATC 1 cut(s) 1033
Eco47I GGWCC 2 cut(s) 833, 1189
Eco81I CCTNAGG 2 cut(s) 39, 200
Eco88I CYCGRG 1 cut(s) 1324
EcoO109I RGGNCCY 1 cut(s) 833
EcoRII CCWGG 4 cut(s) 183, 836, 1123, 1191
EcoRV GATATC 1 cut(s) 1033
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 2 cut(s) 38, 86
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 8 cut(s) 124, 454, 494, 598, 720, 889, 981, 1097
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 2 cut(s) 819, 1069
FatI CATG 8 cut(s) 120, 450, 490, 594, 716, 885, 977, 1093
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 4 cut(s) 70, 73, 616, 1261
FokI GGATG 5 cut(s) 56, 183, 561, 593, 941
FriOI GRGCYC 2 cut(s) 38, 86
Fsp4HI GCNGC 4 cut(s) 70, 73, 616, 1261
FspBI CTAG 2 cut(s) 9, 546
GlaI GCGC 1 cut(s) 329
GluI GCNGC 4 cut(s) 70, 73, 616, 1261
HaeIII GGCC 2 cut(s) 626, 1006
HapII CCGG 4 cut(s) 244, 477, 710, 1087
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 1058
Hin1II CATG 8 cut(s) 124, 454, 494, 598, 720, 889, 981, 1097
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 1202
HinfI GANTC 3 cut(s) 367, 706, 847
HpaII CCGG 4 cut(s) 244, 477, 710, 1087
HphI GGTGA 4 cut(s) 307, 376, 673, 736
Hpy166II GTNNAC 3 cut(s) 142, 643, 681
Hpy188I TCNGA 7 cut(s) 236, 372, 439, 670, 769, 852, 1240
Hpy188III TCNNGA 3 cut(s) 9, 546, 710
Hpy8I GTNNAC 3 cut(s) 142, 643, 681
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 6 cut(s) 97, 256, 748, 778, 871, 919
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 4 cut(s) 54, 633, 822, 1058
HpyCH4V TGCA 3 cut(s) 72, 108, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 114, 742, 1099
HpySE526I ACGT 4 cut(s) 54, 633, 822, 1058
Hsp92I GRCGYC 1 cut(s) 1058
Hsp92II CATG 8 cut(s) 124, 454, 494, 598, 720, 889, 981, 1097
HspAI GCGC 1 cut(s) 328
Kpn2I TCCGGA 1 cut(s) 709
Kzo9I GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
LmnI GCTCC 2 cut(s) 89, 694
Lsp1109I GCAGC 4 cut(s) 56, 84, 627, 1247
LweI GCATC 4 cut(s) 117, 591, 627, 919
MaeI CTAG 2 cut(s) 9, 546
MaeII ACGT 4 cut(s) 54, 633, 822, 1058
MaeIII GTNAC 4 cut(s) 22, 59, 394, 494
MalI GATC 6 cut(s) 129, 233, 422, 489, 1074, 1210
MboI GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
MboII GAAGA 6 cut(s) 310, 352, 764, 886, 952, 1150
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 4 cut(s) 38, 86, 273, 435
MluCI AATT 7 cut(s) 531, 686, 760, 890, 1179, 1300, 1315
MlyI GAGTC 2 cut(s) 376, 856
MmeI TCCRAC 2 cut(s) 350, 882
MroI TCCGGA 1 cut(s) 709
MseI TTAA 1 cut(s) 1320
MslI CAYNNNNRTG 2 cut(s) 599, 971
MspA1I CMGCKG 1 cut(s) 1260
MspI CCGG 4 cut(s) 244, 477, 710, 1087
MspR9I CCNGG 4 cut(s) 185, 838, 1125, 1193
MunI CAATTG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 991
MvaI CCWGG 4 cut(s) 185, 838, 1125, 1193
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 81, 114, 742, 1099
NcoI CCATGG 1 cut(s) 450
NdeII GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
NlaIII CATG 8 cut(s) 124, 454, 494, 598, 720, 889, 981, 1097
NlaIV GGNNCC 4 cut(s) 85, 390, 515, 835
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 3 cut(s) 59, 394, 494
NspI RCATGY 1 cut(s) 981
PaqCI CACCTGC 1 cut(s) 712
PasI CCCWGGG 1 cut(s) 837
PceI AGGCCT 2 cut(s) 626, 1006
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 969
PctI GAATGC 1 cut(s) 991
PfeI GAWTC 1 cut(s) 706
PflFI GACNNNGTC 2 cut(s) 53, 1144
PkrI GCNGC 4 cut(s) 71, 74, 617, 1262
PleI GAGTC 2 cut(s) 375, 855
PpsI GAGTC 2 cut(s) 375, 855
PpuMI RGGWCCY 1 cut(s) 833
PsiI TTATAA 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 833
Psp6I CCWGG 4 cut(s) 183, 836, 1123, 1191
PspGI CCWGG 4 cut(s) 183, 836, 1123, 1191
PspN4I GGNNCC 4 cut(s) 85, 390, 515, 835
PspPI GGNCC 2 cut(s) 833, 1189
PspPPI RGGWCCY 1 cut(s) 833
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 127
PsyI GACNNNGTC 2 cut(s) 53, 1144
PvuII CAGCTG 1 cut(s) 1260
RsaI GTAC 1 cut(s) 982
RsaNI GTAC 1 cut(s) 981
RseI CAYNNNNRTG 2 cut(s) 599, 971
SaqAI TTAA 1 cut(s) 1320
SatI GCNGC 4 cut(s) 70, 73, 616, 1261
Sau3AI GATC 6 cut(s) 127, 231, 420, 487, 1072, 1208
Sau96I GGNCC 2 cut(s) 833, 1189
SchI GAGTC 2 cut(s) 376, 856
ScrFI CCNGG 4 cut(s) 185, 838, 1125, 1193
SduI GDGCHC 4 cut(s) 38, 86, 273, 435
SfaNI GCATC 4 cut(s) 117, 591, 627, 919
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 2 cut(s) 833, 1189
SmiMI CAYNNNNRTG 2 cut(s) 599, 971
Sse9I AATT 7 cut(s) 531, 686, 760, 890, 1179, 1300, 1315
SseBI AGGCCT 2 cut(s) 626, 1006
SsiI CCGC 3 cut(s) 165, 293, 692
SspMI CTAG 2 cut(s) 9, 546
StuI AGGCCT 2 cut(s) 626, 1006
StyD4I CCNGG 4 cut(s) 183, 836, 1123, 1191
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 4 cut(s) 57, 636, 825, 1061
TaqI TCGA 2 cut(s) 648, 963
TasI AATT 7 cut(s) 531, 686, 760, 890, 1179, 1300, 1315
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 1 cut(s) 1320
Tru9I TTAA 1 cut(s) 1320
TscAI CASTG 3 cut(s) 149, 403, 510
TseFI GTSAC 3 cut(s) 59, 394, 494
TseI GCWGC 4 cut(s) 69, 72, 615, 1260
Tsp45I GTSAC 3 cut(s) 59, 394, 494
TspDTI ATGAA 5 cut(s) 109, 743, 869, 902, 938
TspGWI ACGGA 2 cut(s) 47, 272
TspRI CASTG 3 cut(s) 149, 403, 510
Tth111I GACNNNGTC 2 cut(s) 53, 1144
VpaK11BI GGWCC 2 cut(s) 833, 1189
XapI RAATTY 1 cut(s) 890
XbaI TCTAGA 2 cut(s) 8, 545
XceI RCATGY 1 cut(s) 981
XspI CTAG 2 cut(s) 9, 546
ZraI GACGTC 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.