Rh7CG152400
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015660
Physical Location & Seq
Forward (+)
12521455 .. 12523011
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG152400.1

Sequence Viewer

Length: 1050 bp
ATGCTTTCTAGAGCCTTGACCGTAACCAGAAAGAGCCCTAAGGATGGCGACTACGTCCGTGACCTCGGCTGCAGCAAATCGGGCTCCTTTAACGACTACGAGGACTGCATCGTCGGCTTCATGGAGGATCTGCCACTCGTCCACTGCGACCACGACAAGAAGTGCGTGGGATGTGTGGAGAGCCTGGCACACCTAACCCTAAGGGGTGTGCTTAGAGGCTCGGTGGGTGTGATCGGAGAGAGCCGGTTGGCGATGACGGAGAAGGTGGTGCTCTTGGGAGGGAGGGTGTGTGCGGTGAAGAGGTTTAGGCAGGTCAGGGTTGGGAGGCGCGAGTTTGGGAAGAGAATACAGAGGTTGGCTGAGGTGAGTCGGAAGTGTGAGTTTCTGGTTCCTGTCACTGCTTACTTGTTTGCTAAGAGGATCAAGTTTGTGCTCTCGGATTATCGCCCCATGGGAAGTCTCGCTGACTTGCTTGCCGGTGCGAGGGATCATGGTCACACGGCACTGGTTTGGAACCAAAGGCTGACCATAATTTTCCATATTTCTAGAGCAATATCATTTATCCATACACAACATCCTCCATACCAAAAGAACATGATGATGCACATCCACGGCAGCATCAAGGCCTCAAACGTATTAGTGAACATCGACTTCTCAGCCTGCTTATCCGATTACGGGTTCACCCAATTGGCGGAGCAAGTTGAGATTCCGGAAACATGGCAGGTGATGAAGTCGCCCTTCTGGCTGGTGGAAGAGACCAATTACTCTGACGAGTTGAACCAGAAGGCTGACATTTACAACTTTGGGGTAATACTGCTGGACGTTTTAGCAGGTCCCAGGGGCTTGAGTCTGATGAAAAAGGGGGCAAAGGAGAAGAAGGAAGCCATGAAATTTGCTGGGTTGGACTTGGTTGAGTTTGGTATGAAGGATGCGAAGGAAAGGAGGCAAGTATCAAAGGTCTTCGACATTGCCGTGGCATGTACGAATGCCAAACGGGAGACTAGGCCTACAATAGATGAGATTTATAATGATATCGTGGGGATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

349

Amino Acids

39.32

Weight (kDa)

9.03

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 88 - 343 6e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 96 - 344 1.5e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015660)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26430
malus_domestica MD06G1104800.v1.1 MD14G1123700.v1.1
prunus_persica Prupe.5G117400_v2.0.a1
pyrus_communis pycom06g09930
rosa_chinensis RchiOBHm_Chr7g0195111
rosa_laevigata RLG00000004145
rosa_multiflora Rmu_co8510033.1_g000001 Rmu_sc0002381.1_g000031
rosa_roxburghii Rroxscaffold_3G00260770
rosa_rugosa Rorug07G0020900
rosa_samantha Rh7AG148200 Rh7BG149000 Rh7CG152400 Rh7DG149300
rosa_wichuraiana Rw7G012650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AarI CACCTGC 1 cut(s) 712
AasI GACNNNNNNGTC 1 cut(s) 110
Acc36I ACCTGC 3 cut(s) 301, 712, 821
AccII CGCG 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 2 cut(s) 293, 692
AclWI GGATC 3 cut(s) 135, 428, 495
AcsI RAATTY 1 cut(s) 890
AfaI GTAC 1 cut(s) 982
AfiI CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
AgsI TTSAA 1 cut(s) 778
AjnI CCWGG 2 cut(s) 183, 836
Alw21I GWGCWC 2 cut(s) 273, 435
Alw26I GTCTC 3 cut(s) 464, 749, 992
AlwI GGATC 3 cut(s) 135, 428, 495
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 2 cut(s) 624, 1004
ApeKI GCWGC 3 cut(s) 69, 72, 615
ApoI RAATTY 1 cut(s) 890
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 833
AsuHPI GGTGA 4 cut(s) 307, 376, 673, 736
AvaII GGWCC 1 cut(s) 833
AxyI CCTNAGG 2 cut(s) 39, 200
BanII GRGCYC 2 cut(s) 38, 86
BbsI GAAGAC 1 cut(s) 952
Bbv12I GWGCWC 2 cut(s) 273, 435
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 56, 84, 627
BccI CCATC 1 cut(s) 38
BceAI ACGGC 3 cut(s) 516, 628, 956
BciT130I CCWGG 2 cut(s) 185, 838
BcoDI GTCTC 3 cut(s) 464, 749, 992
BfaI CTAG 3 cut(s) 9, 546, 1002
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 3 cut(s) 301, 712, 821
BglI GCCNNNNNGGC 1 cut(s) 742
BisI GCNGC 3 cut(s) 70, 73, 616
BlsI GCNGC 3 cut(s) 71, 74, 617
Bme1390I CCNGG 2 cut(s) 185, 838
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 833
BmiI GGNNCC 4 cut(s) 85, 390, 515, 835
BmrFI CCNGG 2 cut(s) 185, 838
BmsI GCATC 4 cut(s) 117, 591, 627, 919
BpiI GAAGAC 1 cut(s) 952
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 865
BsaBI GATNNNNATC 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 6 cut(s) 64, 450, 610, 836, 837, 972
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 4 cut(s) 270, 274, 300, 304
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
Bse118I RCCGGY 2 cut(s) 243, 476
Bse1I ACTGG 1 cut(s) 510
Bse21I CCTNAGG 2 cut(s) 39, 200
Bse3DI GCAATG 1 cut(s) 966
Bse8I GATNNNNATC 1 cut(s) 605
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 2 cut(s) 185, 838
BseDI CCNNGG 6 cut(s) 64, 450, 610, 836, 837, 972
BseGI GGATG 5 cut(s) 49, 176, 574, 606, 934
BseJI GATNNNNATC 1 cut(s) 605
BseLI CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 2 cut(s) 351, 669
BseNI ACTGG 1 cut(s) 510
BseXI GCAGC 3 cut(s) 56, 84, 627
BseYI CCCAGC 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 626, 1006
BsiHKAI GWGCWC 2 cut(s) 273, 435
BsiSI CCGG 3 cut(s) 244, 477, 710
BslFI GGGAC 1 cut(s) 819
BslI CCNNNNNNNGG 4 cut(s) 44, 483, 675, 691
BsmAI GTCTC 3 cut(s) 464, 749, 992
BsmFI GGGAC 1 cut(s) 819
BsmI GAATGC 1 cut(s) 991
BsnI GGCC 2 cut(s) 626, 1006
Bso31I GGTCTC 1 cut(s) 749
Bsp1286I GDGCHC 4 cut(s) 38, 86, 273, 435
Bsp13I TCCGGA 1 cut(s) 709
Bsp143I GATC 4 cut(s) 127, 231, 420, 487
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 2 cut(s) 293, 692
BspANI GGCC 2 cut(s) 626, 1006
BspCNI CTCAG 2 cut(s) 352, 668
BspEI TCCGGA 1 cut(s) 709
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 4 cut(s) 85, 390, 515, 835
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 3 cut(s) 301, 712, 821
BspPI GGATC 3 cut(s) 135, 428, 495
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 966
BsrFI RCCGGY 2 cut(s) 243, 476
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 2 cut(s) 243, 476
BssECI CCNNGG 6 cut(s) 64, 450, 610, 836, 837, 972
BssMI GATC 4 cut(s) 127, 231, 420, 487
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 185, 838
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 3 cut(s) 293, 335, 747
BstC8I GCNNGC 2 cut(s) 474, 661
BstDEI CTNAG 6 cut(s) 39, 200, 212, 360, 414, 655
BstDSI CCRYGG 3 cut(s) 450, 610, 972
BstF5I GGATG 5 cut(s) 49, 176, 574, 606, 934
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 4 cut(s) 130, 234, 423, 490
BstMAI GTCTC 3 cut(s) 464, 749, 992
BstMBI GATC 4 cut(s) 127, 231, 420, 487
BstMWI GCNNNNNNNGC 3 cut(s) 81, 114, 742
BstNI CCWGG 2 cut(s) 185, 838
BstNSI RCATGY 1 cut(s) 981
BstSCI CCNGG 2 cut(s) 183, 836
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 56, 84, 627
BstV2I GAAGAC 1 cut(s) 952
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
Bsu36I CCTNAGG 2 cut(s) 39, 200
BsuRI GGCC 2 cut(s) 626, 1006
BtgI CCRYGG 3 cut(s) 450, 610, 972
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 5 cut(s) 49, 176, 574, 606, 934
BtsI GCAGTG 2 cut(s) 142, 396
BtsIMutI CAGTG 3 cut(s) 142, 396, 503
BveI ACCTGC 3 cut(s) 301, 712, 821
Cac8I GCNNGC 2 cut(s) 474, 661
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 2 cut(s) 243, 476
Cfr13I GGNCC 1 cut(s) 833
Csp6I GTAC 1 cut(s) 981
CviAII CATG 7 cut(s) 121, 451, 491, 595, 717, 886, 978
CviQI GTAC 1 cut(s) 981
DdeI CTNAG 6 cut(s) 39, 200, 212, 360, 414, 655
DpnI GATC 4 cut(s) 129, 233, 422, 489
DpnII GATC 4 cut(s) 127, 231, 420, 487
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 3 cut(s) 293, 335, 747
EarI CTCTTC 3 cut(s) 293, 335, 747
EciI GGCGGA 1 cut(s) 707
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 2 cut(s) 626, 1006
Eco24I GRGCYC 2 cut(s) 38, 86
Eco31I GGTCTC 1 cut(s) 749
Eco32I GATATC 1 cut(s) 1033
Eco47I GGWCC 1 cut(s) 833
Eco81I CCTNAGG 2 cut(s) 39, 200
EcoO109I RGGNCCY 1 cut(s) 833
EcoRII CCWGG 2 cut(s) 183, 836
EcoRV GATATC 1 cut(s) 1033
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 2 cut(s) 38, 86
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 7 cut(s) 124, 454, 494, 598, 720, 889, 981
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 1 cut(s) 819
FatI CATG 7 cut(s) 120, 450, 490, 594, 716, 885, 977
Fnu4HI GCNGC 3 cut(s) 70, 73, 616
FokI GGATG 5 cut(s) 56, 183, 561, 593, 941
FriOI GRGCYC 2 cut(s) 38, 86
Fsp4HI GCNGC 3 cut(s) 70, 73, 616
FspBI CTAG 3 cut(s) 9, 546, 1002
GlaI GCGC 1 cut(s) 329
GluI GCNGC 3 cut(s) 70, 73, 616
GsaI CCCAGC 1 cut(s) 900
HaeIII GGCC 2 cut(s) 626, 1006
HapII CCGG 3 cut(s) 244, 477, 710
HhaI GCGC 1 cut(s) 330
Hin1II CATG 7 cut(s) 124, 454, 494, 598, 720, 889, 981
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 3 cut(s) 367, 706, 847
HpaII CCGG 3 cut(s) 244, 477, 710
HphI GGTGA 4 cut(s) 307, 376, 673, 736
Hpy166II GTNNAC 3 cut(s) 142, 643, 681
Hpy188I TCNGA 6 cut(s) 236, 372, 439, 670, 769, 852
Hpy188III TCNNGA 3 cut(s) 9, 546, 710
Hpy8I GTNNAC 3 cut(s) 142, 643, 681
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 6 cut(s) 256, 748, 778, 871, 919, 928
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 3 cut(s) 54, 633, 822
HpyCH4V TGCA 3 cut(s) 72, 108, 604
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 114, 742
HpyF3I CTNAG 6 cut(s) 39, 200, 212, 360, 414, 655
HpySE526I ACGT 3 cut(s) 54, 633, 822
Hsp92II CATG 7 cut(s) 124, 454, 494, 598, 720, 889, 981
HspAI GCGC 1 cut(s) 328
Kpn2I TCCGGA 1 cut(s) 709
Kzo9I GATC 4 cut(s) 127, 231, 420, 487
LmnI GCTCC 2 cut(s) 89, 694
Lsp1109I GCAGC 3 cut(s) 56, 84, 627
LweI GCATC 4 cut(s) 117, 591, 627, 919
MaeI CTAG 3 cut(s) 9, 546, 1002
MaeII ACGT 3 cut(s) 54, 633, 822
MaeIII GTNAC 4 cut(s) 22, 59, 394, 494
MalI GATC 4 cut(s) 129, 233, 422, 489
MboI GATC 4 cut(s) 127, 231, 420, 487
MboII GAAGA 5 cut(s) 310, 352, 764, 886, 952
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 4 cut(s) 38, 86, 273, 435
MluCI AATT 4 cut(s) 531, 686, 760, 890
MlyI GAGTC 2 cut(s) 376, 856
MmeI TCCRAC 2 cut(s) 350, 882
MroI TCCGGA 1 cut(s) 709
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 599, 971
MspI CCGG 3 cut(s) 244, 477, 710
MspR9I CCNGG 2 cut(s) 185, 838
MunI CAATTG 1 cut(s) 686
Mva1269I GAATGC 1 cut(s) 991
MvaI CCWGG 2 cut(s) 185, 838
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 81, 114, 742
NcoI CCATGG 1 cut(s) 450
NdeII GATC 4 cut(s) 127, 231, 420, 487
NlaIII CATG 7 cut(s) 124, 454, 494, 598, 720, 889, 981
NlaIV GGNNCC 4 cut(s) 85, 390, 515, 835
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 3 cut(s) 59, 394, 494
NspI RCATGY 1 cut(s) 981
PaqCI CACCTGC 1 cut(s) 712
PasI CCCWGGG 1 cut(s) 837
PceI AGGCCT 2 cut(s) 626, 1006
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 969
PctI GAATGC 1 cut(s) 991
PfeI GAWTC 1 cut(s) 706
PflFI GACNNNGTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 71, 74, 617
PleI GAGTC 2 cut(s) 375, 855
PpsI GAGTC 2 cut(s) 375, 855
PpuMI RGGWCCY 1 cut(s) 833
PsiI TTATAA 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 833
Psp6I CCWGG 2 cut(s) 183, 836
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 2 cut(s) 183, 836
PspN4I GGNNCC 4 cut(s) 85, 390, 515, 835
PspPI GGNCC 1 cut(s) 833
PspPPI RGGWCCY 1 cut(s) 833
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 982
RsaNI GTAC 1 cut(s) 981
RseI CAYNNNNRTG 2 cut(s) 599, 971
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 70, 73, 616
Sau3AI GATC 4 cut(s) 127, 231, 420, 487
Sau96I GGNCC 1 cut(s) 833
SchI GAGTC 2 cut(s) 376, 856
ScrFI CCNGG 2 cut(s) 185, 838
SduI GDGCHC 4 cut(s) 38, 86, 273, 435
SfaNI GCATC 4 cut(s) 117, 591, 627, 919
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 599, 971
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 4 cut(s) 531, 686, 760, 890
SseBI AGGCCT 2 cut(s) 626, 1006
SsiI CCGC 2 cut(s) 293, 692
SspMI CTAG 3 cut(s) 9, 546, 1002
StuI AGGCCT 2 cut(s) 626, 1006
StyD4I CCNGG 2 cut(s) 183, 836
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 3 cut(s) 57, 636, 825
TaqI TCGA 2 cut(s) 648, 963
TasI AATT 4 cut(s) 531, 686, 760, 890
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 3 cut(s) 149, 403, 510
TseFI GTSAC 3 cut(s) 59, 394, 494
TseI GCWGC 3 cut(s) 69, 72, 615
Tsp45I GTSAC 3 cut(s) 59, 394, 494
TspDTI ATGAA 5 cut(s) 109, 743, 869, 902, 938
TspGWI ACGGA 2 cut(s) 47, 272
TspRI CASTG 3 cut(s) 149, 403, 510
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 1 cut(s) 890
XbaI TCTAGA 2 cut(s) 8, 545
XceI RCATGY 1 cut(s) 981
XspI CTAG 3 cut(s) 9, 546, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.