Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010367

Physical Location & Seq

Genomic Coordinates Reverse (-)

58223513 .. 58228694

Gene Structure 5182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGGCGGATCCAATTCCATCAGCACCGCACAGATCCAACACCGACTTCTTCTCCGACCCCCTCGACTCCCACCCCCTCTGGTTCAAGCCCGCGCTCTTCCTCTCCCCGGACTTCGACTCCGAGGCCTACATCTCCGACCTCCGAACCTTCGTCCCCTTCGACACCCTCCGATCCGAGCTCCAGTCCTATCTCGCCTCCCTCAACCACGACCTCATCGACCTCATCAACCGCGACTACGCCGACTTCGTCAACCTCAGCACCAAGCTCGTCGACGTCGACTCCGCCGTTGTGCGCATGCGGGCCCCGCTCCTGGAGCTCAGGGAGAAGATCGAGCAGTTCAGGGGCTCCGTGCAGGGCTCGCTTGTGGCGCTGACCAATGGATTGAAGCAGAGATCCGAGGCCGCCGAGGCTAGGGAGATCTTGGAGCTTCTGCTCGATACGTTTCACGTCGTCTCCAAGGTTGAAAAACTAATAAAGGAGTTGCCTAGTGTGCCTGCCGATTGGTCTAACGGAGATGTAAATTTAGCAGAGAAGAATTTTATCAGCAATGGGACTACCGAGAATGGGACAAATCTCAGAGATACTCAAAGCATGCTTTTGGAGAGAATTGCCAGTGAGATGAATCGCCTCAAGTTCTATATTGCTCATGCACAGAACCTGCCTTTCATTGAAAACATGGAGAAGAGGATCCAGGGTGCTAGCCTATTATTAGACGCCAGCCTGGGACATTGTTTTGTAGATGGACTGGAACATCGAGATGCAAATGCAATTTACAATTGCTTGAGGGCATATGCTGCCATTGATAATACTAGGAGTGCAGAAGAACTTTTCCGAACAACCATTGTGGCTCCATTAATACAAAAAGTTATTCCACATGGGGCATCATGGGCGGATGGAAAGCCATCTGGAGATGAACTTGAGAATGATTATCAGCAAATTAAGCAATGCATTCAGAAAGACTGCAAATTTTTGTTGGAAATTTCTTTTGAAGTTGCTTCAACATCATTGTTTCATGGTGTATCTTTACTCGATATCTTCCTTCTCGAATGCACTCTAGAAAATTCTGGTTTGCACGTGTTCGACTTCTTGGCAAACTCAATTCTCAAAGAGGTTCTTTCAGCAATCCAAAAGGGAAAACCTGGTGCTTTTTCTCCTGGACGACCAACAGAATTTTTGAAAAATTATAAATCAAGCCTAGAGTTCTTGGCTCATCTAGAAGGCTACTTTCCTTCCAGAGCAGCTGTTAGTAAATTTCGAGCAGAAGCCGTTTATAATGAGTTCATGAAGCAATGGAACCTTGGGGTTTATTTCTCTTTGAGGTTTCAGGAGATTGCGGGTGCTCTAGATTCTGTACTTGCGGCGACTAGTCTTGTCCCTCTTCATAATATACCTTCTGGCCAAGGAGATTCACCAGACTTGACATTAAAGCAAAGTGCTACTTTGTTAGAGTGCTTGGAATCCTGTTGGAGAGAAGACGTTGTTGTTCTTTCTTACTCTGACAAGTTTCTTCGCTTATCCTTGCAGCTTCTTTCAAGATACTCAAGTTGGTTGTCATCTGGACTAGCTGCTCGGAAGAGGGGTAATACCGGCTCCAATCCTGGCTGTGAATGGGCTATTTCAACTGTACCAGATGAATTTATTTATATTATTCATGACATCAATTGTCTTCACACAAGGGTTTGCGGTGACTTTCTCGAACATGTACTTGAGCTTCTTTCATCATGTTCTGGCGATATACTTGATCATGTAAAACAGAGCATTTTACATGGAGGAAAAGCATTGGATGCATTAGTACCTGCCATTATCAACACTATTGTGGAGACTCTGGTTGAGAAGTCTGTCGAGGACTTGAGGCAGCTAAAGGGAATAACAGCAACGTACAGGATGACTAATAAACCTCTTCCTGTCAGACACTCACCGTATGTGTCGGGAGTATTACGTCCCCTGAAGGTCTTTTTGGATGGGGAGCGAGCTTCAAGGTACCTGAAAGAAGATGCTAAGAATGAACTTGTGCTTAGTGCTGCAACTGAGATTACTGGTCGTTATTATGAGTTAGCTGCTGATCTCGTCAGTGTGGCTAGGAGAACAGAGACCTCACTCCAGAGAATAAGGCAAGGTGCACAAAGAAGAGGTGGAGCAAACGCAGATGTCTTGGATCACAATGTGTCCGACACTGACAAGATTTGCATGCAATTATTCCTAGACATTCAGGAGTACGGCCGTAACCTGGCAGTCCTTGGTGTAGATGCTGCCAATATCAAATCGTACCGCTCATTGTGGGAATGTGTTGCTCCTGCAGACAGGCGAAGTGTGATTAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

774

Amino Acids

86.42

Weight (kDa)

5.46

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG2_N	PF06148	26 - 100	1.4e-25	COG2 N-terminal
COG2_C	PF12022	429 - 736	4.4e-98	COG complex component, COG2, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24840
fragaria_vesca	FvH4_5g08050 FvH4_5g08050 FvH4_5g08050
malus_domestica	MD06G1143400.v1.1 MD14G1158600.v1.1
prunus_persica	Prupe.5G152600_v2.0.a1
pyrus_communis	pycom06g13310 pycom14g13230
rosa_chinensis	RchiOBHm_Chr7g0190411
rosa_laevigata	RLG00000004535
rosa_multiflora	Rmu_sc0014718.1_g000002 Rmu_sc0017751.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264650
rosa_rugosa	Rorug06G0504500 Rorug06G0504600
rosa_samantha	Rh7AG110300 Rh7BG112800 Rh7CG115100 Rh7DG113400
rosa_wichuraiana	Rw7G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1185, 1272
AatII	GACGTC	1 cut(s)	276
Acc16I	TGCGCA	1 cut(s)	293
Acc36I	ACCTGC	2 cut(s)	666, 1804
Acc65I	GGTACC	1 cut(s)	1980
AccB1I	GGYRCC	1 cut(s)	1980
AccBSI	CCGCTC	2 cut(s)	307, 2271
AccI	GTMKAC	2 cut(s)	270, 276
AccII	CGCG	2 cut(s)	92, 231
AclWI	GGATC	8 cut(s)	2, 15, 27, 165, 387, 682, 695, 2163
AcoI	YGGCCR	2 cut(s)	1396, 2218
AcsI	RAATTY	8 cut(s)	520, 535, 965, 978, 1060, 1169, 1250, 1634
AcuI	CTGAAG	1 cut(s)	1967
AcvI	CACGTG	1 cut(s)	1075
AcyI	GRCGYC	2 cut(s)	273, 714
AdeI	CACNNNGTG	1 cut(s)	2164
AfaI	GTAC	8 cut(s)	1353, 1626, 1704, 1794, 1880, 1982, 2216, 2267
AfiI	CCNNNNNNNGG	5 cut(s)	106, 310, 411, 564, 2227
AflIII	ACRYGT	2 cut(s)	1074, 1699
AhlI	ACTAGT	1 cut(s)	1364
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	7 cut(s)	309, 690, 720, 1138, 1153, 1597, 2226
AjuI	GAANNNNNNNTTGG	4 cut(s)	29, 61, 1940, 1972
AleI	CACNNNNGTG	1 cut(s)	1814
Alw21I	GWGCWC	4 cut(s)	180, 318, 1342, 2122
Alw26I	GTCTC	3 cut(s)	457, 1814, 2084
Alw44I	GTGCAC	1 cut(s)	2118
AlwI	GGATC	8 cut(s)	2, 15, 27, 165, 387, 682, 695, 2163
AlwNI	CAGNNNCTG	1 cut(s)	658
AoxI	GGCC	5 cut(s)	123, 300, 399, 1396, 2218
ApaI	GGGCCC	1 cut(s)	304
ApaLI	GTGCAC	1 cut(s)	2118
ApeKI	GCWGC	8 cut(s)	794, 1238, 1522, 1565, 1855, 2021, 2057, 2249
ApoI	RAATTY	8 cut(s)	520, 535, 965, 978, 1060, 1169, 1250, 1634
AseI	ATTAAT	2 cut(s)	854, 2316
Asp718I	GGTACC	1 cut(s)	1980
AspLEI	GCGC	3 cut(s)	94, 294, 370
AspS9I	GGNCC	2 cut(s)	300, 301
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	1401, 1697, 1908
AsuNHI	GCTAGC	1 cut(s)	698
BaeGI	GKGCMC	2 cut(s)	304, 2122
BaeI	ACNNNNGTAYC	2 cut(s)	1528, 1561
BalI	TGGCCA	1 cut(s)	1398
BamHI	GGATCC	2 cut(s)	7, 687
BanI	GGYRCC	1 cut(s)	1980
BanII	GRGCYC	5 cut(s)	180, 304, 318, 347, 359
BarI	GAAGNNNNNNTAC	2 cut(s)	1695, 1727
BbrPI	CACGTG	1 cut(s)	1075
BbsI	GAAGAC	2 cut(s)	1479, 1658
Bbv12I	GWGCWC	4 cut(s)	180, 318, 1342, 2122
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	8 cut(s)	781, 1250, 1534, 1552, 1867, 2008, 2044, 2236
BccI	CCATC	5 cut(s)	25, 734, 887, 910, 1955
BceAI	ACGGC	4 cut(s)	269, 1250, 2205, 2233
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	7 cut(s)	311, 692, 722, 1140, 1155, 1599, 2228
BclI	TGATCA	1 cut(s)	1741
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	3 cut(s)	457, 1814, 2084
BcuI	ACTAGT	1 cut(s)	1364
BfmI	CTRYAG	1 cut(s)	2295
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	2 cut(s)	666, 1804
BglI	GCCNNNNNGGC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	417
Bme1390I	CCNGG	8 cut(s)	107, 311, 692, 722, 1140, 1155, 1599, 2228
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	300, 301
BmiI	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1295, 1591, 1982
BmrFI	CCNGG	8 cut(s)	107, 311, 692, 722, 1140, 1155, 1599, 2228
BmsI	GCATC	5 cut(s)	748, 890, 1774, 1984, 2236
BmtI	GCTAGC	1 cut(s)	702
BpiI	GAAGAC	2 cut(s)	1479, 1658
BpmI	CTGGAG	4 cut(s)	164, 332, 927, 2084
Bpu10I	CCTNAGC	2 cut(s)	254, 317
BpuEI	CTTGAG	6 cut(s)	614, 802, 938, 1525, 1727, 1870
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	1075
BsaHI	GRCGYC	2 cut(s)	273, 714
BsaI	GGTCTC	1 cut(s)	2084
BsaXI	ACNNNNNCTCC	8 cut(s)	35, 65, 101, 131, 263, 293, 437, 467
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 310, 411, 564, 2227
Bse118I	RCCGGY	1 cut(s)	1586
Bse1I	ACTGG	4 cut(s)	181, 612, 750, 2041
Bse3DI	GCAATG	3 cut(s)	553, 950, 1295
BseBI	CCWGG	7 cut(s)	311, 692, 722, 1140, 1155, 1599, 2228
BseGI	GGATG	4 cut(s)	898, 1789, 1890, 1966
BseLI	CCNNNNNNNGG	5 cut(s)	106, 310, 411, 564, 2227
BseMI	GCAATG	3 cut(s)	553, 950, 1295
BseMII	CTCAG	4 cut(s)	268, 331, 589, 2019
BseNI	ACTGG	4 cut(s)	181, 612, 750, 2041
BseSI	GKGCMC	2 cut(s)	304, 2122
BseX3I	CGGCCG	1 cut(s)	2218
BseXI	GCAGC	8 cut(s)	781, 1250, 1534, 1552, 1867, 2008, 2044, 2236
BsgI	GTGCAG	2 cut(s)	371, 837
Bsh1236I	CGCG	2 cut(s)	92, 231
Bsh1285I	CGRYCG	1 cut(s)	2221
BshFI	GGCC	5 cut(s)	125, 302, 401, 1398, 2220
BshNI	GGYRCC	1 cut(s)	1980
BsiEI	CGRYCG	1 cut(s)	2221
BsiHKAI	GWGCWC	4 cut(s)	180, 318, 1342, 2122
BsiSI	CCGG	2 cut(s)	107, 1587
BslFI	GGGAC	6 cut(s)	137, 565, 580, 738, 1358, 1926
BslI	CCNNNNNNNGG	5 cut(s)	106, 310, 411, 564, 2227
BsmAI	GTCTC	3 cut(s)	457, 1814, 2084
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	6 cut(s)	137, 565, 580, 738, 1358, 1926
BsmI	GAATGC	2 cut(s)	948, 1052
BsnI	GGCC	5 cut(s)	125, 302, 401, 1398, 2220
Bso31I	GGTCTC	1 cut(s)	2084
Bsp120I	GGGCCC	1 cut(s)	300
Bsp1286I	GDGCHC	7 cut(s)	180, 304, 318, 347, 359, 1342, 2122
BspANI	GGCC	5 cut(s)	125, 302, 401, 1398, 2220
BspCNI	CTCAG	4 cut(s)	267, 330, 588, 2020
BspFNI	CGCG	2 cut(s)	92, 231
BspHI	TCATGA	2 cut(s)	1281, 1651
BspLI	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1295, 1591, 1982
BspMAI	CTGCAG	1 cut(s)	2299
BspMI	ACCTGC	2 cut(s)	666, 1804
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	8 cut(s)	2, 15, 27, 165, 387, 682, 695, 2163
BspQI	GCTCTTC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	1980
BspTNI	GGTCTC	1 cut(s)	2084
BsrBI	CCGCTC	2 cut(s)	307, 2271
BsrDI	GCAATG	3 cut(s)	553, 950, 1295
BsrFI	RCCGGY	1 cut(s)	1586
BsrI	ACTGG	4 cut(s)	181, 612, 750, 2041
BssAI	RCCGGY	1 cut(s)	1586
BssNI	GRCGYC	2 cut(s)	273, 714
BssT1I	CCWWGG	4 cut(s)	456, 1297, 1399, 2236
Bst2UI	CCWGG	7 cut(s)	311, 692, 722, 1140, 1155, 1599, 2228
Bst4CI	ACNGT	2 cut(s)	1624, 1920
Bst6I	CTCTTC	6 cut(s)	101, 677, 1383, 1568, 1905, 2122
BstACI	GRCGYC	2 cut(s)	273, 714
BstAPI	GCANNNNNTGC	2 cut(s)	794, 1784
BstBAI	YACGTR	1 cut(s)	1075
BstDEI	CTNAG	6 cut(s)	254, 317, 575, 1998, 2015, 2028
BstF5I	GGATG	4 cut(s)	898, 1789, 1890, 1966
BstFNI	CGCG	2 cut(s)	92, 231
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	3 cut(s)	94, 294, 370
BstMAI	GTCTC	3 cut(s)	457, 1814, 2084
BstMCI	CGRYCG	1 cut(s)	2221
BstNI	CCWGG	7 cut(s)	311, 692, 722, 1140, 1155, 1599, 2228
BstNSI	RCATGY	4 cut(s)	298, 595, 1703, 2191
BstSCI	CCNGG	8 cut(s)	105, 309, 690, 720, 1138, 1153, 1597, 2226
BstSFI	CTRYAG	1 cut(s)	2295
BstSLI	GKGCMC	2 cut(s)	304, 2122
BstUI	CGCG	2 cut(s)	92, 231
BstV1I	GCAGC	8 cut(s)	781, 1250, 1534, 1552, 1867, 2008, 2044, 2236
BstV2I	GAAGAC	2 cut(s)	1479, 1658
BstX2I	RGATCY	5 cut(s)	7, 32, 392, 417, 687
BstYI	RGATCY	5 cut(s)	7, 32, 392, 417, 687
BstZI	CGGCCG	1 cut(s)	2218
BsuRI	GGCC	5 cut(s)	125, 302, 401, 1398, 2220
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	4 cut(s)	898, 1789, 1890, 1966
BtsIMutI	CAGTG	3 cut(s)	619, 2077, 2172
BveI	ACCTGC	2 cut(s)	666, 1804
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	2 cut(s)	1281, 1651
CfoI	GCGC	3 cut(s)	94, 294, 370
Cfr10I	RCCGGY	1 cut(s)	1586
Cfr13I	GGNCC	2 cut(s)	300, 301
CseI	GACGC	1 cut(s)	722
CsiI	ACCWGGT	1 cut(s)	1138
Csp6I	GTAC	8 cut(s)	1352, 1625, 1703, 1793, 1879, 1981, 2215, 2266
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviQI	GTAC	8 cut(s)	1352, 1625, 1703, 1793, 1879, 1981, 2215, 2266
DdeI	CTNAG	6 cut(s)	254, 317, 575, 1998, 2015, 2028
DraIII	CACNNNGTG	1 cut(s)	2164
EaeI	YGGCCR	2 cut(s)	1396, 2218
EagI	CGGCCG	1 cut(s)	2218
Eam1104I	CTCTTC	6 cut(s)	101, 677, 1383, 1568, 1905, 2122
EarI	CTCTTC	6 cut(s)	101, 677, 1383, 1568, 1905, 2122
EciI	GGCGGA	3 cut(s)	20, 271, 905
Ecl136II	GAGCTC	2 cut(s)	178, 316
EclXI	CGGCCG	1 cut(s)	2218
Eco130I	CCWWGG	4 cut(s)	456, 1297, 1399, 2236
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	5 cut(s)	180, 304, 318, 347, 359
Eco31I	GGTCTC	1 cut(s)	2084
Eco32I	GATATC	1 cut(s)	1033
Eco52I	CGGCCG	1 cut(s)	2218
Eco53kI	GAGCTC	2 cut(s)	178, 316
Eco57I	CTGAAG	1 cut(s)	1967
Eco72I	CACGTG	1 cut(s)	1075
EcoICRI	GAGCTC	2 cut(s)	178, 316
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	7 cut(s)	309, 690, 720, 1138, 1153, 1597, 2226
EcoRV	GATATC	1 cut(s)	1033
EcoT14I	CCWWGG	4 cut(s)	456, 1297, 1399, 2236
EcoT22I	ATGCAT	2 cut(s)	950, 1789
EcoT38I	GRGCYC	5 cut(s)	180, 304, 318, 347, 359
ErhI	CCWWGG	4 cut(s)	456, 1297, 1399, 2236
Esp3I	CGTCTC	1 cut(s)	457
FalI	AAGNNNNNCTT	4 cut(s)	1098, 1130, 1423, 1455
FaqI	GGGAC	6 cut(s)	137, 565, 580, 738, 1358, 1926
FauI	CCCGC	4 cut(s)	97, 291, 312, 1327
FauNDI	CATATG	1 cut(s)	790
FbaI	TGATCA	1 cut(s)	1741
FblI	GTMKAC	2 cut(s)	270, 276
FokI	GGATG	4 cut(s)	905, 1796, 1897, 1973
FriOI	GRGCYC	5 cut(s)	180, 304, 318, 347, 359
FspAI	RTGCGCAY	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	3 cut(s)	93, 293, 369
GsuI	CTGGAG	4 cut(s)	164, 332, 927, 2084
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	5 cut(s)	125, 302, 401, 1398, 2220
HapII	CCGG	2 cut(s)	107, 1587
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	3 cut(s)	94, 294, 370
Hin1I	GRCGYC	2 cut(s)	273, 714
Hin6I	GCGC	3 cut(s)	92, 292, 368
HinP1I	GCGC	3 cut(s)	92, 292, 368
HincII	GTYRAC	3 cut(s)	250, 271, 277
HindII	GTYRAC	3 cut(s)	250, 271, 277
HinfI	GANTC	8 cut(s)	65, 116, 278, 622, 1346, 1406, 1457, 1822
HpaII	CCGG	2 cut(s)	107, 1587
HphI	GGTGA	3 cut(s)	1401, 1697, 1908
Hpy166II	GTNNAC	4 cut(s)	250, 271, 277, 2120
Hpy8I	GTNNAC	4 cut(s)	250, 271, 277, 2120
Hpy99I	CGWCG	4 cut(s)	272, 275, 278, 452
HpyAV	CCTTC	7 cut(s)	157, 166, 1049, 1211, 1239, 1401, 1942
HpyCH4III	ACNGT	2 cut(s)	1624, 1920
HpyCH4IV	ACGT	7 cut(s)	273, 440, 447, 1074, 1476, 1877, 1939
HpyF3I	CTNAG	6 cut(s)	254, 317, 575, 1998, 2015, 2028
HpySE526I	ACGT	7 cut(s)	273, 440, 447, 1074, 1476, 1877, 1939
Hsp92I	GRCGYC	2 cut(s)	273, 714
HspAI	GCGC	3 cut(s)	92, 292, 368
KpnI	GGTACC	1 cut(s)	1984
Ksp22I	TGATCA	1 cut(s)	1741
LguI	GCTCTTC	1 cut(s)	101
Lsp1109I	GCAGC	8 cut(s)	781, 1250, 1534, 1552, 1867, 2008, 2044, 2236
LweI	GCATC	5 cut(s)	748, 890, 1774, 1984, 2236
MabI	ACCWGGT	1 cut(s)	1138
MaeII	ACGT	7 cut(s)	273, 440, 447, 1074, 1476, 1877, 1939
MaeIII	GTNAC	2 cut(s)	1685, 2222
MbiI	CCGCTC	2 cut(s)	307, 2271
MfeI	CAATTG	2 cut(s)	775, 1660
MflI	RGATCY	5 cut(s)	7, 32, 392, 417, 687
MhlI	GDGCHC	7 cut(s)	180, 304, 318, 347, 359, 1342, 2122
MlsI	TGGCCA	1 cut(s)	1398
MluNI	TGGCCA	1 cut(s)	1398
MlyI	GAGTC	4 cut(s)	59, 110, 272, 1816
MmeI	TCCRAC	6 cut(s)	60, 78, 159, 954, 1445, 2193
Mox20I	TGGCCA	1 cut(s)	1398
Mph1103I	ATGCAT	2 cut(s)	950, 1789
MscI	TGGCCA	1 cut(s)	1398
MseI	TTAA	4 cut(s)	854, 939, 1424, 2316
MslI	CAYNNNNRTG	2 cut(s)	756, 1814
Msp20I	TGGCCA	1 cut(s)	1398
MspA1I	CMGCKG	1 cut(s)	1241
MspI	CCGG	2 cut(s)	107, 1587
MspR9I	CCNGG	8 cut(s)	107, 311, 692, 722, 1140, 1155, 1599, 2228
MunI	CAATTG	2 cut(s)	775, 1660
Mva1269I	GAATGC	2 cut(s)	948, 1052
MvaI	CCWGG	7 cut(s)	311, 692, 722, 1140, 1155, 1599, 2228
MvnI	CGCG	2 cut(s)	92, 231
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	790
NheI	GCTAGC	1 cut(s)	698
NlaIV	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1295, 1591, 1982
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	1685
NsbI	TGCGCA	1 cut(s)	293
NsiI	ATGCAT	2 cut(s)	950, 1789
NspI	RCATGY	4 cut(s)	298, 595, 1703, 2191
OliI	CACNNNNGTG	1 cut(s)	1814
PaeI	GCATGC	3 cut(s)	298, 595, 2191
PagI	TCATGA	2 cut(s)	1281, 1651
PceI	AGGCCT	1 cut(s)	125
PciI	ACATGT	1 cut(s)	1699
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	5 cut(s)	156, 213, 243, 273, 282
PctI	GAATGC	2 cut(s)	948, 1052
PfeI	GAWTC	4 cut(s)	622, 1346, 1406, 1457
PflFI	GACNNNGTC	1 cut(s)	245
PfoI	TCCNGGA	2 cut(s)	309, 1153
PleI	GAGTC	4 cut(s)	59, 110, 272, 1816
PmaCI	CACGTG	1 cut(s)	1075
PmlI	CACGTG	1 cut(s)	1075
PpsI	GAGTC	4 cut(s)	59, 110, 272, 1816
Ppu21I	YACGTR	1 cut(s)	1075
PscI	ACATGT	1 cut(s)	1699
PshBI	ATTAAT	2 cut(s)	854, 2316
PsiI	TTATAA	2 cut(s)	1185, 1272
Psp124BI	GAGCTC	2 cut(s)	180, 318
Psp6I	CCWGG	7 cut(s)	309, 690, 720, 1138, 1153, 1597, 2226
PspCI	CACGTG	1 cut(s)	1075
PspGI	CCWGG	7 cut(s)	309, 690, 720, 1138, 1153, 1597, 2226
PspN4I	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1295, 1591, 1982
PspOMI	GGGCCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	300, 301
PstI	CTGCAG	1 cut(s)	2299
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	5 cut(s)	7, 32, 392, 417, 687
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	1241
RsaI	GTAC	8 cut(s)	1353, 1626, 1704, 1794, 1880, 1982, 2216, 2267
RsaNI	GTAC	8 cut(s)	1352, 1625, 1703, 1793, 1879, 1981, 2215, 2266
RseI	CAYNNNNRTG	2 cut(s)	756, 1814
SacI	GAGCTC	2 cut(s)	180, 318
SalI	GTCGAC	2 cut(s)	269, 275
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	854, 939, 1424, 2316
Sau96I	GGNCC	2 cut(s)	300, 301
SchI	GAGTC	4 cut(s)	59, 110, 272, 1816
ScrFI	CCNGG	8 cut(s)	107, 311, 692, 722, 1140, 1155, 1599, 2228
SduI	GDGCHC	7 cut(s)	180, 304, 318, 347, 359, 1342, 2122
SexAI	ACCWGGT	1 cut(s)	1138
SfaNI	GCATC	5 cut(s)	748, 890, 1774, 1984, 2236
SfcI	CTRYAG	1 cut(s)	2295
SgrDI	CGTCGACG	1 cut(s)	269
SmiMI	CAYNNNNRTG	2 cut(s)	756, 1814
SmlI	CTYRAG	6 cut(s)	629, 781, 917, 1540, 1706, 1849
SmoI	CTYRAG	6 cut(s)	629, 781, 917, 1540, 1706, 1849
SpeI	ACTAGT	1 cut(s)	1364
SphI	GCATGC	3 cut(s)	298, 595, 2191
SseBI	AGGCCT	1 cut(s)	125
SstI	GAGCTC	2 cut(s)	180, 318
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	8 cut(s)	105, 309, 690, 720, 1138, 1153, 1597, 2226
StyI	CCWWGG	4 cut(s)	456, 1297, 1399, 2236
TaaI	ACNGT	2 cut(s)	1624, 1920
TaiI	ACGT	7 cut(s)	276, 443, 450, 1077, 1479, 1880, 1942
TatI	WGTACW	2 cut(s)	1351, 1702
TauI	GCSGC	2 cut(s)	404, 1361
TfiI	GAWTC	4 cut(s)	622, 1346, 1406, 1457
Tru1I	TTAA	4 cut(s)	854, 939, 1424, 2316
Tru9I	TTAA	4 cut(s)	854, 939, 1424, 2316
TscAI	CASTG	3 cut(s)	619, 2077, 2179
TseFI	GTSAC	1 cut(s)	1685
TseI	GCWGC	8 cut(s)	794, 1238, 1522, 1565, 1855, 2021, 2057, 2249
Tsp45I	GTSAC	1 cut(s)	1685
TspGWI	ACGGA	2 cut(s)	337, 525
TspRI	CASTG	3 cut(s)	619, 2077, 2179
Tth111I	GACNNNGTC	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	2118
VspI	ATTAAT	2 cut(s)	854, 2316
XapI	RAATTY	8 cut(s)	520, 535, 965, 978, 1060, 1169, 1250, 1634
XbaI	TCTAGA	3 cut(s)	1054, 1213, 1342
XceI	RCATGY	4 cut(s)	298, 595, 1703, 2191
XmiI	GTMKAC	2 cut(s)	270, 276
ZraI	GACGTC	1 cut(s)	274
Zsp2I	ATGCAT	2 cut(s)	950, 1789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.