Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010367

Physical Location & Seq

Genomic Coordinates Forward (+)

9655213 .. 9660557

Gene Structure 5345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG113400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGGCGGATCCAATTCCATCAGCACCGCACAGATCCAACACCGACTTCTTCTCCGACCCCCTCGACTCCCACCCCCTCTGGTTCAAGCCCGCGCTCTTCCTCTCCCCGGACTTCGACTCCGAGGCCTACATCTCCGACCTCCGAACCTTCGTCCCCTTCGACACCCTCCGATCCGAGCTCCAGTCCTATCTCGCCTCCCTCAACCACGACCTCATCGACCTCATCAACCGCGACTACGCCGACTTCGTCAACCTCAGCACCAAGCTCGTCGACGTCGACTCCGCCGTCGTGCGCATGCGGGCCCCGCTCCTGGAGCTCAGGGAGAAGATCGACCAGTTCAGAGGCTCCGTGCAGGGCTCGCTTGTGGCGCTGACCAATGGATTGAAGCAGAGATCCGAGGCCGCCGAGGCTAGGGAGATCTTGGAGCTTCTGCTCGATACGTTTCACGTCGTCTCCAAGGTTGAAAAACTAATAAAGGAGTTGCCTAGTGTGCCTGCCGATTGGTCAAACGGAGATGTAAATTTAGCAGAGAAGAATTTTATCAGCAACGGGACTACCGAGAATGGGACAAATCTCAGAGATACTCAAAGCATGCTTTTGGAGAGAATTGCCAGTGAGATGAATCGCCTCAAGTTCTATATTGCTCATGCACAGAACCTGCCTTTCATTGAAAACATGGAGAAGAGGATCCAGGGTGCTAGCCTATTATTAGATGCCAGCCTGGGACATTGTTTTGTAGATGGACTGGAACATCGAGATGCAAATGCAATTTACAATTGCTTAAGGGCATATGCTGCCGTTGATAATACTAGGAGTGCAGAAGAACTTTTCCGAACAACCATTGTGGCCCCATTAATACAAAAAGTTATTCCGCATGGGGCATCATGGGCGGATGGAAAGCCATCTGGAGATGAACTTGAGAATGATTATCAGAAAATTAAGCAATGCATTCAGAAAGACTGCAAATTTTTGTTGGAGATTTCTTTTGAAGAAAATTCTGGTTTGCACGTGTTCGACTTCTTGGCAAACTCAATTCTCAAAGAGGTTCTTTCAGCAATCCAAAAGGGGAAACCTGGTGCTTTTTCACCTGGACGACCAACAGAATTTTTGAAAAATTATAAATCAAGCCTCGAGTTCTTGGCTCATCTAGAAGGCTACTTTCCGTCCAGAGCAGCTGTTAGTAAATTTCGAGCAGAAGCCGTTTATATTGAGTTCATGAAGCAATGGAACCTTGGGGTTTATTTCTCTTTGAGGTTTCAGGAGATTGCGGGTGCTCTAGATTCTGTACTTGCGGCGACTAGTCTTGTCCCTGTTCATAATATACCTTCTGGTCAAGGAGATTCTCCAGACTTGACATTAAAACAAAGTGCTACTCTGTTAGAGTGCTTGGAATCCTGTTGGAGAGAAGACGTTGTTGTTCTTTCTTATTCTGACAAGTTTCTTCGCTTATCCTTGCAGCTTCTTTCAAGATACTCAAGTTGGTTGTCATCTGGACTAGCTGCTCGGAAGAGGGGTAATACTGGCTCCAATCCTGGCTGTGAATGGGCTATTTCAACTGTACCAGATGAATTTATTTATATTATTCATGACATCAATTGTCTTCACACAAGGGTTTGTGGTGACTTTCTCGAACATGTACTTGAGCTTCTTTCATCATGTTCTGCCGATATACTTGATCATGTAAAACAGAGCATTTTACACGGAGGAAAAGCATTGGATGCATTAGTACCTGCCATTATCAACACTATTGTGGAGACTCTGGTTGAGAAGTCGGTTGAGGACTTGAGGCAGCTAAAGGGAATAACAGCAACGTACAGGATGACTAATAAACCTCTTCCTGTCAGACACTCACCGTATGTGTCGGGAGTATTACGTCCCCTGAAGGTCTTTTTGGATGGGGAGCGAGCTTCAAGGTACCTGAAAGAAGATGCTAAGAATGAACTTGTGCTTAGTGCTGCGACTGAGATTACTGGTCGTTATTATGAGTTAGCTGCTGATCTCGTCAGTGTGGCTAGGAGAACAGAGACTTCACTCCAGAGAATAAGGCAAGGTGCACAAAGAAGAGGTGGAGCAAACGCAGATGTCTTGGATCACAATGTGTCCGACACTGACAAGATTTGCATGCAATTATTCCTAGACATTCAGGTAAGACACAATCCACATTGGCCTTACGGGTATGTGTTGTGTGTGTGTATGGTATTGTTTTCTTTTGTGACGCAATATGACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005829 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016192 GO:0017119 GO:0031984 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0048193 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0071840 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG2 DUF3510

Protein Analysis

743

Amino Acids

83.25

Weight (kDa)

5.58

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG2_N	PF06148	26 - 100	1.3e-25	COG2 N-terminal
COG2_C	PF12022	407 - 714	1.6e-98	COG complex component, COG2, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24840
fragaria_vesca	FvH4_5g08050 FvH4_5g08050 FvH4_5g08050
malus_domestica	MD06G1143400.v1.1 MD14G1158600.v1.1
prunus_persica	Prupe.5G152600_v2.0.a1
pyrus_communis	pycom06g13310 pycom14g13230
rosa_chinensis	RchiOBHm_Chr7g0190411
rosa_laevigata	RLG00000004535
rosa_multiflora	Rmu_sc0014718.1_g000002 Rmu_sc0017751.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264650
rosa_rugosa	Rorug06G0504500 Rorug06G0504600
rosa_samantha	Rh7AG110300 Rh7BG112800 Rh7CG115100 Rh7DG113400
rosa_wichuraiana	Rw7G009570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1119
AasI	GACNNNNNNGTC	1 cut(s)	284
AatII	GACGTC	1 cut(s)	276
Acc16I	TGCGCA	1 cut(s)	293
Acc36I	ACCTGC	2 cut(s)	666, 1738
Acc65I	GGTACC	1 cut(s)	1914
AccB1I	GGYRCC	1 cut(s)	1914
AccBSI	CCGCTC	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	270, 276
AccII	CGCG	2 cut(s)	92, 231
AclWI	GGATC	8 cut(s)	2, 15, 27, 165, 387, 682, 695, 2097
AcsI	RAATTY	7 cut(s)	520, 535, 965, 994, 1103, 1184, 1568
AcuI	CTGAAG	1 cut(s)	1901
AcvI	CACGTG	1 cut(s)	1009
AcyI	GRCGYC	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	2098
AfaI	GTAC	6 cut(s)	1287, 1560, 1638, 1728, 1814, 1916
AfiI	CCNNNNNNNGG	4 cut(s)	106, 310, 411, 564
AflII	CTTAAG	1 cut(s)	781
AflIII	ACRYGT	3 cut(s)	1008, 1633, 2226
AgsI	TTSAA	9 cut(s)	85, 385, 464, 671, 989, 1111, 1467, 1554, 1911
AhlI	ACTAGT	1 cut(s)	1298
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	6 cut(s)	309, 690, 720, 1072, 1087, 1531
AjuI	GAANNNNNNNTTGG	4 cut(s)	29, 61, 1874, 1906
AleI	CACNNNNGTG	1 cut(s)	1748
Alw21I	GWGCWC	4 cut(s)	180, 318, 1276, 2056
Alw26I	GTCTC	3 cut(s)	457, 1748, 2018
Alw44I	GTGCAC	1 cut(s)	2052
AlwI	GGATC	8 cut(s)	2, 15, 27, 165, 387, 682, 695, 2097
AlwNI	CAGNNNCTG	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	1130
AoxI	GGCC	5 cut(s)	123, 300, 399, 846, 2165
ApaI	GGGCCC	1 cut(s)	304
ApaLI	GTGCAC	1 cut(s)	2052
ApeKI	GCWGC	7 cut(s)	794, 1172, 1456, 1499, 1789, 1955, 1991
ApoI	RAATTY	7 cut(s)	520, 535, 965, 994, 1103, 1184, 1568
AseI	ATTAAT	1 cut(s)	854
Asp718I	GGTACC	1 cut(s)	1914
AspLEI	GCGC	3 cut(s)	94, 294, 370
AspS9I	GGNCC	3 cut(s)	300, 301, 847
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	1077, 1631, 1842
AsuNHI	GCTAGC	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	1130
BaeGI	GKGCMC	2 cut(s)	304, 2056
BaeI	ACNNNNGTAYC	2 cut(s)	1462, 1495
BamHI	GGATCC	2 cut(s)	7, 687
BanI	GGYRCC	1 cut(s)	1914
BanII	GRGCYC	4 cut(s)	180, 304, 318, 359
BarI	GAAGNNNNNNTAC	2 cut(s)	1629, 1661
BbrPI	CACGTG	1 cut(s)	1009
BbsI	GAAGAC	2 cut(s)	1413, 1592
Bbv12I	GWGCWC	4 cut(s)	180, 318, 1276, 2056
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	7 cut(s)	781, 1184, 1468, 1486, 1801, 1942, 1978
BccI	CCATC	5 cut(s)	25, 734, 887, 910, 1889
BceAI	ACGGC	3 cut(s)	269, 782, 1184
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	6 cut(s)	311, 692, 722, 1074, 1089, 1533
BclI	TGATCA	1 cut(s)	1675
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	3 cut(s)	457, 1748, 2018
BcuI	ACTAGT	1 cut(s)	1298
BfoI	RGCGCY	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	781
BfuAI	ACCTGC	2 cut(s)	666, 1738
BglI	GCCNNNNNGGC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	9 cut(s)	402, 795, 1173, 1293, 1457, 1500, 1790, 1956, 1992
BlsI	GCNGC	9 cut(s)	403, 796, 1174, 1294, 1458, 1501, 1791, 1957, 1993
Bme1390I	CCNGG	7 cut(s)	107, 311, 692, 722, 1074, 1089, 1533
BmeT110I	CYCGRG	1 cut(s)	1130
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	3 cut(s)	300, 301, 847
BmiI	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1229, 1525, 1916
BmrFI	CCNGG	7 cut(s)	107, 311, 692, 722, 1074, 1089, 1533
BmsI	GCATC	5 cut(s)	703, 748, 890, 1708, 1918
BmtI	GCTAGC	1 cut(s)	702
BpiI	GAAGAC	2 cut(s)	1413, 1592
BpmI	CTGGAG	5 cut(s)	164, 332, 927, 1329, 2018
Bpu10I	CCTNAGC	2 cut(s)	254, 317
BpuEI	CTTGAG	5 cut(s)	614, 938, 1459, 1661, 1804
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	2 cut(s)	1009, 2229
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	8 cut(s)	105, 120, 396, 405, 456, 691, 721, 1231
BsaXI	ACNNNNNCTCC	8 cut(s)	35, 65, 101, 131, 263, 293, 437, 467
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 310, 411, 564
Bse1I	ACTGG	6 cut(s)	181, 334, 612, 750, 1525, 1975
Bse3DI	GCAATG	2 cut(s)	950, 1229
BseBI	CCWGG	6 cut(s)	311, 692, 722, 1074, 1089, 1533
BseDI	CCNNGG	8 cut(s)	105, 120, 396, 405, 456, 691, 721, 1231
BseGI	GGATG	4 cut(s)	898, 1723, 1824, 1900
BseLI	CCNNNNNNNGG	4 cut(s)	106, 310, 411, 564
BseMI	GCAATG	2 cut(s)	950, 1229
BseMII	CTCAG	4 cut(s)	268, 331, 589, 1953
BseNI	ACTGG	6 cut(s)	181, 334, 612, 750, 1525, 1975
BseSI	GKGCMC	2 cut(s)	304, 2056
BseXI	GCAGC	7 cut(s)	781, 1184, 1468, 1486, 1801, 1942, 1978
BsgI	GTGCAG	2 cut(s)	371, 837
Bsh1236I	CGCG	2 cut(s)	92, 231
BshFI	GGCC	5 cut(s)	125, 302, 401, 848, 2167
BshNI	GGYRCC	1 cut(s)	1914
BsiHKAI	GWGCWC	4 cut(s)	180, 318, 1276, 2056
BsiHKCI	CYCGRG	1 cut(s)	1130
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	6 cut(s)	137, 565, 580, 738, 1292, 1860
BslI	CCNNNNNNNGG	4 cut(s)	106, 310, 411, 564
BsmAI	GTCTC	3 cut(s)	457, 1748, 2018
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	6 cut(s)	137, 565, 580, 738, 1292, 1860
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	5 cut(s)	125, 302, 401, 848, 2167
BsoBI	CYCGRG	1 cut(s)	1130
Bsp120I	GGGCCC	1 cut(s)	300
Bsp1286I	GDGCHC	6 cut(s)	180, 304, 318, 359, 1276, 2056
BspANI	GGCC	5 cut(s)	125, 302, 401, 848, 2167
BspCNI	CTCAG	4 cut(s)	267, 330, 588, 1954
BspFNI	CGCG	2 cut(s)	92, 231
BspHI	TCATGA	2 cut(s)	1215, 1585
BspLI	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1229, 1525, 1916
BspMI	ACCTGC	2 cut(s)	666, 1738
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	8 cut(s)	2, 15, 27, 165, 387, 682, 695, 2097
BspQI	GCTCTTC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	1914
BspTI	CTTAAG	1 cut(s)	781
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	950, 1229
BsrI	ACTGG	6 cut(s)	181, 334, 612, 750, 1525, 1975
BssECI	CCNNGG	8 cut(s)	105, 120, 396, 405, 456, 691, 721, 1231
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	456, 1231
Bst2UI	CCWGG	6 cut(s)	311, 692, 722, 1074, 1089, 1533
Bst4CI	ACNGT	2 cut(s)	1558, 1854
Bst6I	CTCTTC	5 cut(s)	101, 677, 1502, 1839, 2056
BstACI	GRCGYC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	781
BstAPI	GCANNNNNTGC	2 cut(s)	794, 1718
BstBAI	YACGTR	2 cut(s)	1009, 2229
BstDEI	CTNAG	6 cut(s)	254, 317, 575, 1932, 1949, 1962
BstF5I	GGATG	4 cut(s)	898, 1723, 1824, 1900
BstFNI	CGCG	2 cut(s)	92, 231
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	3 cut(s)	94, 294, 370
BstMAI	GTCTC	3 cut(s)	457, 1748, 2018
BstMWI	GCNNNNNNNGC	9 cut(s)	304, 313, 358, 367, 407, 490, 794, 887, 1718
BstNI	CCWGG	6 cut(s)	311, 692, 722, 1074, 1089, 1533
BstNSI	RCATGY	4 cut(s)	298, 595, 1637, 2125
BstSCI	CCNGG	7 cut(s)	105, 309, 690, 720, 1072, 1087, 1531
BstSLI	GKGCMC	2 cut(s)	304, 2056
BstUI	CGCG	2 cut(s)	92, 231
BstV1I	GCAGC	7 cut(s)	781, 1184, 1468, 1486, 1801, 1942, 1978
BstV2I	GAAGAC	2 cut(s)	1413, 1592
BstX2I	RGATCY	5 cut(s)	7, 32, 392, 417, 687
BstYI	RGATCY	5 cut(s)	7, 32, 392, 417, 687
BsuRI	GGCC	5 cut(s)	125, 302, 401, 848, 2167
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	4 cut(s)	898, 1723, 1824, 1900
BtsIMutI	CAGTG	3 cut(s)	619, 2011, 2106
BveI	ACCTGC	2 cut(s)	666, 1738
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	2 cut(s)	1215, 1585
CfoI	GCGC	3 cut(s)	94, 294, 370
Cfr13I	GGNCC	3 cut(s)	300, 301, 847
CseI	GACGC	1 cut(s)	2224
CsiI	ACCWGGT	1 cut(s)	1072
Csp6I	GTAC	6 cut(s)	1286, 1559, 1637, 1727, 1813, 1915
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviQI	GTAC	6 cut(s)	1286, 1559, 1637, 1727, 1813, 1915
DdeI	CTNAG	6 cut(s)	254, 317, 575, 1932, 1949, 1962
DraIII	CACNNNGTG	1 cut(s)	2098
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	5 cut(s)	101, 677, 1502, 1839, 2056
EarI	CTCTTC	5 cut(s)	101, 677, 1502, 1839, 2056
EciI	GGCGGA	3 cut(s)	20, 271, 905
Ecl136II	GAGCTC	2 cut(s)	178, 316
Eco130I	CCWWGG	2 cut(s)	456, 1231
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	4 cut(s)	180, 304, 318, 359
Eco53kI	GAGCTC	2 cut(s)	178, 316
Eco57I	CTGAAG	1 cut(s)	1901
Eco72I	CACGTG	1 cut(s)	1009
Eco88I	CYCGRG	1 cut(s)	1130
EcoICRI	GAGCTC	2 cut(s)	178, 316
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	6 cut(s)	309, 690, 720, 1072, 1087, 1531
EcoT14I	CCWWGG	2 cut(s)	456, 1231
EcoT22I	ATGCAT	2 cut(s)	950, 1723
EcoT38I	GRGCYC	4 cut(s)	180, 304, 318, 359
ErhI	CCWWGG	2 cut(s)	456, 1231
Esp3I	CGTCTC	1 cut(s)	457
FalI	AAGNNNNNCTT	2 cut(s)	1032, 1064
FaqI	GGGAC	6 cut(s)	137, 565, 580, 738, 1292, 1860
FauI	CCCGC	4 cut(s)	97, 291, 312, 1261
FauNDI	CATATG	1 cut(s)	790
FbaI	TGATCA	1 cut(s)	1675
FblI	GTMKAC	2 cut(s)	270, 276
Fnu4HI	GCNGC	9 cut(s)	402, 795, 1173, 1293, 1457, 1500, 1790, 1956, 1992
FokI	GGATG	4 cut(s)	905, 1730, 1831, 1907
FriOI	GRGCYC	4 cut(s)	180, 304, 318, 359
Fsp4HI	GCNGC	9 cut(s)	402, 795, 1173, 1293, 1457, 1500, 1790, 1956, 1992
FspAI	RTGCGCAY	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	3 cut(s)	93, 293, 369
GluI	GCNGC	9 cut(s)	402, 795, 1173, 1293, 1457, 1500, 1790, 1956, 1992
GsuI	CTGGAG	5 cut(s)	164, 332, 927, 1329, 2018
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	5 cut(s)	125, 302, 401, 848, 2167
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	2224
HhaI	GCGC	3 cut(s)	94, 294, 370
Hin1I	GRCGYC	1 cut(s)	273
Hin6I	GCGC	3 cut(s)	92, 292, 368
HinP1I	GCGC	3 cut(s)	92, 292, 368
HincII	GTYRAC	3 cut(s)	250, 271, 277
HindII	GTYRAC	3 cut(s)	250, 271, 277
HinfI	GANTC	8 cut(s)	65, 116, 278, 622, 1280, 1340, 1391, 1756
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	3 cut(s)	1077, 1631, 1842
Hpy166II	GTNNAC	4 cut(s)	250, 271, 277, 2054
Hpy8I	GTNNAC	4 cut(s)	250, 271, 277, 2054
Hpy99I	CGWCG	5 cut(s)	272, 275, 278, 290, 452
HpyAV	CCTTC	5 cut(s)	157, 166, 1145, 1335, 1876
HpyCH4III	ACNGT	2 cut(s)	1558, 1854
HpyCH4IV	ACGT	8 cut(s)	273, 440, 447, 1008, 1410, 1811, 1873, 2228
HpyF10VI	GCNNNNNNNGC	9 cut(s)	304, 313, 358, 367, 407, 490, 794, 887, 1718
HpyF3I	CTNAG	6 cut(s)	254, 317, 575, 1932, 1949, 1962
HpySE526I	ACGT	8 cut(s)	273, 440, 447, 1008, 1410, 1811, 1873, 2228
Hsp92I	GRCGYC	1 cut(s)	273
HspAI	GCGC	3 cut(s)	92, 292, 368
KpnI	GGTACC	1 cut(s)	1918
Ksp22I	TGATCA	1 cut(s)	1675
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	8 cut(s)	183, 312, 313, 350, 424, 1529, 1900, 2069
Lsp1109I	GCAGC	7 cut(s)	781, 1184, 1468, 1486, 1801, 1942, 1978
LweI	GCATC	5 cut(s)	703, 748, 890, 1708, 1918
MabI	ACCWGGT	1 cut(s)	1072
MaeII	ACGT	8 cut(s)	273, 440, 447, 1008, 1410, 1811, 1873, 2228
MaeIII	GTNAC	2 cut(s)	1619, 2212
MbiI	CCGCTC	1 cut(s)	307
MfeI	CAATTG	2 cut(s)	775, 1594
MflI	RGATCY	5 cut(s)	7, 32, 392, 417, 687
MhlI	GDGCHC	6 cut(s)	180, 304, 318, 359, 1276, 2056
MlyI	GAGTC	4 cut(s)	59, 110, 272, 1750
MmeI	TCCRAC	6 cut(s)	60, 78, 159, 954, 1379, 2127
Mph1103I	ATGCAT	2 cut(s)	950, 1723
MseI	TTAA	4 cut(s)	782, 854, 939, 1358
MslI	CAYNNNNRTG	2 cut(s)	756, 1748
MspA1I	CMGCKG	1 cut(s)	1175
MspCI	CTTAAG	1 cut(s)	781
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	7 cut(s)	107, 311, 692, 722, 1074, 1089, 1533
MunI	CAATTG	2 cut(s)	775, 1594
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	6 cut(s)	311, 692, 722, 1074, 1089, 1533
MvnI	CGCG	2 cut(s)	92, 231
MwoI	GCNNNNNNNGC	9 cut(s)	304, 313, 358, 367, 407, 490, 794, 887, 1718
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	790
NheI	GCTAGC	1 cut(s)	698
NlaIV	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1229, 1525, 1916
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	2 cut(s)	1619, 2212
NsbI	TGCGCA	1 cut(s)	293
NsiI	ATGCAT	2 cut(s)	950, 1723
NspI	RCATGY	4 cut(s)	298, 595, 1637, 2125
OliI	CACNNNNGTG	1 cut(s)	1748
PaeI	GCATGC	3 cut(s)	298, 595, 2125
PaeR7I	CTCGAG	1 cut(s)	1130
PagI	TCATGA	2 cut(s)	1215, 1585
PceI	AGGCCT	1 cut(s)	125
PciI	ACATGT	1 cut(s)	1633
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	6 cut(s)	156, 213, 243, 273, 282, 555
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	4 cut(s)	622, 1280, 1340, 1391
PflFI	GACNNNGTC	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	9 cut(s)	403, 796, 1174, 1294, 1458, 1501, 1791, 1957, 1993
PleI	GAGTC	4 cut(s)	59, 110, 272, 1750
PmaCI	CACGTG	1 cut(s)	1009
PmlI	CACGTG	1 cut(s)	1009
PpsI	GAGTC	4 cut(s)	59, 110, 272, 1750
Ppu21I	YACGTR	2 cut(s)	1009, 2229
PscI	ACATGT	1 cut(s)	1633
PshBI	ATTAAT	1 cut(s)	854
PsiI	TTATAA	1 cut(s)	1119
Psp124BI	GAGCTC	2 cut(s)	180, 318
Psp6I	CCWGG	6 cut(s)	309, 690, 720, 1072, 1087, 1531
PspCI	CACGTG	1 cut(s)	1009
PspGI	CCWGG	6 cut(s)	309, 690, 720, 1072, 1087, 1531
PspN4I	GGNNCC	9 cut(s)	9, 302, 303, 346, 689, 849, 1229, 1525, 1916
PspOMI	GGGCCC	1 cut(s)	300
PspPI	GGNCC	3 cut(s)	300, 301, 847
PspXI	VCTCGAGB	1 cut(s)	1130
PstNI	CAGNNNCTG	1 cut(s)	658
PsuI	RGATCY	5 cut(s)	7, 32, 392, 417, 687
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	6 cut(s)	1287, 1560, 1638, 1728, 1814, 1916
RsaNI	GTAC	6 cut(s)	1286, 1559, 1637, 1727, 1813, 1915
RseI	CAYNNNNRTG	2 cut(s)	756, 1748
SacI	GAGCTC	2 cut(s)	180, 318
SalI	GTCGAC	2 cut(s)	269, 275
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	782, 854, 939, 1358
SatI	GCNGC	9 cut(s)	402, 795, 1173, 1293, 1457, 1500, 1790, 1956, 1992
Sau96I	GGNCC	3 cut(s)	300, 301, 847
SchI	GAGTC	4 cut(s)	59, 110, 272, 1750
ScrFI	CCNGG	7 cut(s)	107, 311, 692, 722, 1074, 1089, 1533
SduI	GDGCHC	6 cut(s)	180, 304, 318, 359, 1276, 2056
SexAI	ACCWGGT	1 cut(s)	1072
SfaNI	GCATC	5 cut(s)	703, 748, 890, 1708, 1918
Sfr274I	CTCGAG	1 cut(s)	1130
SgrDI	CGTCGACG	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	1130
SmiMI	CAYNNNNRTG	2 cut(s)	756, 1748
SmlI	CTYRAG	7 cut(s)	629, 781, 917, 1130, 1474, 1640, 1783
SmoI	CTYRAG	7 cut(s)	629, 781, 917, 1130, 1474, 1640, 1783
SpeI	ACTAGT	1 cut(s)	1298
SphI	GCATGC	3 cut(s)	298, 595, 2125
SseBI	AGGCCT	1 cut(s)	125
SstI	GAGCTC	2 cut(s)	180, 318
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	7 cut(s)	105, 309, 690, 720, 1072, 1087, 1531
StyI	CCWWGG	2 cut(s)	456, 1231
TaaI	ACNGT	2 cut(s)	1558, 1854
TaiI	ACGT	8 cut(s)	276, 443, 450, 1011, 1413, 1814, 1876, 2231
TatI	WGTACW	2 cut(s)	1285, 1636
TauI	GCSGC	2 cut(s)	404, 1295
TfiI	GAWTC	4 cut(s)	622, 1280, 1340, 1391
Tru1I	TTAA	4 cut(s)	782, 854, 939, 1358
Tru9I	TTAA	4 cut(s)	782, 854, 939, 1358
TscAI	CASTG	3 cut(s)	619, 2011, 2113
TseFI	GTSAC	2 cut(s)	1619, 2212
TseI	GCWGC	7 cut(s)	794, 1172, 1456, 1499, 1789, 1955, 1991
Tsp45I	GTSAC	2 cut(s)	1619, 2212
TspGWI	ACGGA	4 cut(s)	337, 525, 1152, 1716
TspRI	CASTG	3 cut(s)	619, 2011, 2113
Tth111I	GACNNNGTC	1 cut(s)	245
Vha464I	CTTAAG	1 cut(s)	781
VneI	GTGCAC	1 cut(s)	2052
VspI	ATTAAT	1 cut(s)	854
XapI	RAATTY	7 cut(s)	520, 535, 965, 994, 1103, 1184, 1568
XbaI	TCTAGA	2 cut(s)	1147, 1276
XceI	RCATGY	4 cut(s)	298, 595, 1637, 2125
XhoI	CTCGAG	1 cut(s)	1130
XmiI	GTMKAC	2 cut(s)	270, 276
ZraI	GACGTC	1 cut(s)	274
Zsp2I	ATGCAT	2 cut(s)	950, 1723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.