Rroxscaffold_3G00268190

Cell division control protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019526
Physical Location & Seq
Reverse (-)
61323549 .. 61327814
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268190.1

Sequence Viewer

Length: 360 bp
ATGGACGAAGAAGGCGTGCCTCCGACCGCCCTCGGCGAGGTCTCGCTCCTCCGGATGTTGTCCCGGTCGCTCTACGTGGTCCACCTCCTCTGCGTCGAACACGTGGACAACAAGAAGGACGGGAAATCGGTCCTCTACCTCGTCTTCAAGTACCTCGACACCGAGCCACTCCCCAAGGCATGCCGAGTCAAGATTAGCTCACTTGATGTTTGCAAGGCCGAGAACCACGACGTCGGCCGTATACCAAACGGCGCCGCTTCCACGGGGAGACCAAAAGCCGAACTGTGGGGGTTCGTGCTCACTCCAAGCTTGGAGCTTGTAGAGTCCTCCAAACTTAAGAGTTTGTTGAGAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

8.81

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 241
AccIII TCCGGA 1 cut(s) 51
AciI CCGC 2 cut(s) 27, 255
AcoI YGGCCR 1 cut(s) 235
AcvI CACGTG 1 cut(s) 103
AcyI GRCGYC 2 cut(s) 231, 252
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 37, 285
AflII CTTAAG 1 cut(s) 335
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 3 cut(s) 198, 309, 316
AluI AGCT 3 cut(s) 198, 309, 316
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 46, 262
Aor13HI TCCGGA 1 cut(s) 51
AoxI GGCC 2 cut(s) 216, 235
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 79, 130
AsuC2I CCSGG 1 cut(s) 64
AvaII GGWCC 2 cut(s) 79, 130
BanI GGYRCC 1 cut(s) 251
BbrPI CACGTG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 300
BceAI ACGGC 2 cut(s) 222, 265
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 46, 262
BfoI RGCGCY 1 cut(s) 255
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 2 cut(s) 79, 130
BmgT120I GGNCC 2 cut(s) 79, 130
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 2 cut(s) 76, 103
BsaHI GRCGYC 2 cut(s) 231, 252
BsaI GGTCTC 2 cut(s) 46, 262
BsaJI CCNNGG 3 cut(s) 31, 174, 261
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 285
BseAI TCCGGA 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 31, 174, 261
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 37, 285
BseRI GAGGAG 2 cut(s) 38, 77
BseX3I CGGCCG 1 cut(s) 235
Bsh1285I CGRYCG 3 cut(s) 27, 68, 238
BshFI GGCC 2 cut(s) 218, 237
BshNI GGYRCC 1 cut(s) 251
BsiEI CGRYCG 3 cut(s) 27, 68, 238
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 2 cut(s) 52, 64
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 37, 285
BsmAI GTCTC 2 cut(s) 46, 262
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 218, 237
Bso31I GGTCTC 2 cut(s) 46, 262
Bsp1286I GDGCHC 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 51
BspACI CCGC 2 cut(s) 27, 255
BspANI GGCC 2 cut(s) 218, 237
BspEI TCCGGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 2 cut(s) 46, 262
BssECI CCNNGG 3 cut(s) 31, 174, 261
BssNAI GTATAC 1 cut(s) 242
BssNI GRCGYC 2 cut(s) 231, 252
BssT1I CCWWGG 1 cut(s) 174
Bst1107I GTATAC 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 285
BstACI GRCGYC 2 cut(s) 231, 252
BstAFI CTTAAG 1 cut(s) 335
BstBAI YACGTR 2 cut(s) 76, 103
BstC8I GCNNGC 2 cut(s) 17, 181
BstDSI CCRYGG 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstMAI GTCTC 2 cut(s) 46, 262
BstMCI CGRYCG 3 cut(s) 27, 68, 238
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 242
BstZI CGGCCG 1 cut(s) 235
BsuRI GGCC 2 cut(s) 218, 237
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 17, 181
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 79, 130
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 180
CviJI RGCY 7 cut(s) 166, 198, 218, 237, 278, 309, 316
CviKI_1 RGCY 7 cut(s) 166, 198, 218, 237, 278, 309, 316
CviQI GTAC 1 cut(s) 151
DinI GGCGCC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 235
EagI CGGCCG 1 cut(s) 235
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 174
Eco31I GGTCTC 2 cut(s) 46, 262
Eco47I GGWCC 2 cut(s) 79, 130
Eco52I CGGCCG 1 cut(s) 235
Eco72I CACGTG 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 174
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 183
FaiI YATR 2 cut(s) 181, 242
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 179
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 255
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 2 cut(s) 218, 237
HapII CCGG 2 cut(s) 52, 64
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 2 cut(s) 231, 252
Hin1II CATG 1 cut(s) 183
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 2 cut(s) 186, 323
HpaII CCGG 2 cut(s) 52, 64
Hpy166II GTNNAC 3 cut(s) 82, 106, 242
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 52, 190
Hpy8I GTNNAC 3 cut(s) 82, 106, 242
Hpy99I CGWCG 3 cut(s) 98, 233, 236
HpyAV CCTTC 2 cut(s) 5, 109
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 3 cut(s) 75, 102, 231
HpyCH4V TGCA 1 cut(s) 213
HpySE526I ACGT 3 cut(s) 75, 102, 231
Hsp92I GRCGYC 2 cut(s) 231, 252
Hsp92II CATG 1 cut(s) 183
HspAI GCGC 1 cut(s) 252
KasI GGCGCC 1 cut(s) 251
Kpn2I TCCGGA 1 cut(s) 51
LmnI GCTCC 2 cut(s) 51, 313
LpnPI CCDG 2 cut(s) 65, 77
MaeII ACGT 3 cut(s) 75, 102, 231
MboII GAAGA 2 cut(s) 20, 136
MhlI GDGCHC 1 cut(s) 300
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 2 cut(s) 195, 332
MmeI TCCRAC 1 cut(s) 47
MroI TCCGGA 1 cut(s) 51
MseI TTAA 1 cut(s) 336
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 2 cut(s) 52, 64
MspR9I CCNGG 1 cut(s) 64
NarI GGCGCC 1 cut(s) 252
NciI CCSGG 1 cut(s) 64
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 3 cut(s) 12, 209, 244
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 2 cut(s) 194, 331
PluTI GGCGCC 1 cut(s) 255
PmaCI CACGTG 1 cut(s) 103
PmlI CACGTG 1 cut(s) 103
PpsI GAGTC 2 cut(s) 194, 331
Ppu21I YACGTR 2 cut(s) 76, 103
PspCI CACGTG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 79, 130
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 255
Sau96I GGNCC 2 cut(s) 79, 130
SchI GAGTC 2 cut(s) 195, 332
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 253
SinI GGWCC 2 cut(s) 79, 130
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SphI GCATGC 1 cut(s) 183
SsiI CCGC 2 cut(s) 27, 255
SspDI GGCGCC 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 3 cut(s) 78, 105, 234
TaqI TCGA 2 cut(s) 96, 156
TaqII GACCGA 1 cut(s) 118
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 79, 130
XagI CCTNNNNNAGG 1 cut(s) 35
XceI RCATGY 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 241
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.