Rroxscaffold_7G00178720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019526
Physical Location & Seq
Reverse (-)
18369862 .. 18397197
27336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178720.1

Sequence Viewer

Length: 693 bp
ATGAGGTCAAATGAGCAGATTTGGAGCTCTCTCCATTTTCCAGAGAATGATCTTCTTTATATGCTCTCTCTTCCTCCTCGCTGCATAACAACGAACATTATAACATTTCATCCGTTATCTCGACTAGCACTTTGCAATGTAGTCTTCAAAAATCTCCCAACTTCTAGTGCCCTGCATGTTGTGATTCCTTATACAATTGCAAATTACCTTCATAGATCTATTTCAAAGCTAGAGTGGCGAAGTAACGCGTCGTCTTGGGTGGAGAGCTCGACACACGTTGCGGTTGTGTCTCTCCTCTCGATTAAGGAAGTGATTGATGATCTTGTGCCATGGAACTTGAATTCTCCACTAATGGTTGTAAATTTCCGAGCAGATTTCCTGATCTTAACAAGAAAGCCGCCCACACTGGGGAACCGGCGTAGGTGCCCGCCGTTTCATCCATACCATCTTTCAAAGACATCTCGCTTCTCGGACTCCCAAACCAACATGTCAAGTTGGGCCCTTCACCGCGAGATTCCATCCAGGACGATTCACTCGCCCCTGCGGCCTGCCCATCCGACAACCCATTCCGGTCCTCGAGAAGAACAACGGGAGATTTCACTAATTGGGGTGCGCATCGGCACGAGAGCCAAAATAGGGCATTGGCCTTCCACCATCAACGCGGCGGAGCTCTCGTGGTATCGCGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.28

Weight (kDa)

10.08

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
Acc16I TGCGCA 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 423
AccII CGCG 4 cut(s) 248, 510, 662, 684
AciI CCGC 7 cut(s) 281, 398, 428, 508, 544, 662, 665
AcsI RAATTY 2 cut(s) 340, 361
AfiI CCNNNNNNNGG 3 cut(s) 407, 408, 636
AflIII ACRYGT 3 cut(s) 246, 274, 486
AgsI TTSAA 4 cut(s) 148, 225, 340, 453
AjnI CCWGG 1 cut(s) 521
AluBI AGCT 4 cut(s) 27, 229, 267, 670
AluI AGCT 4 cut(s) 27, 229, 267, 670
Alw21I GWGCWC 3 cut(s) 29, 269, 672
Alw26I GTCTC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 576
AoxI GGCC 3 cut(s) 498, 545, 644
ApaI GGGCCC 1 cut(s) 502
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 340, 361
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspLEI GCGC 1 cut(s) 615
AspS9I GGNCC 3 cut(s) 498, 499, 572
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 1 cut(s) 572
BaeGI GKGCMC 3 cut(s) 172, 428, 502
BanI GGYRCC 1 cut(s) 423
BanII GRGCYC 4 cut(s) 29, 269, 502, 672
BauI CACGAG 2 cut(s) 622, 673
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 3 cut(s) 29, 269, 672
BbvI GCAGC 1 cut(s) 68
BccI CCATC 4 cut(s) 453, 526, 561, 662
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 3 cut(s) 125, 165, 230
BglI GCCNNNNNGGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 215
BisI GCNGC 4 cut(s) 82, 398, 545, 663
BlsI GCNGC 4 cut(s) 83, 399, 546, 664
Bme1390I CCNGG 1 cut(s) 523
Bme18I GGWCC 1 cut(s) 572
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 3 cut(s) 498, 499, 572
BmiI GGNNCC 3 cut(s) 413, 425, 500
BmrFI CCNGG 1 cut(s) 523
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 624
BmuI ACTGGG 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 329
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 407, 408, 636
Bse118I RCCGGY 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 523
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 4 cut(s) 109, 436, 518, 553
BseLI CCNNNNNNNGG 3 cut(s) 407, 408, 636
BseMI GCAATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 2 cut(s) 66, 284
BseSI GKGCMC 3 cut(s) 172, 428, 502
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 4 cut(s) 248, 510, 662, 684
BshFI GGCC 3 cut(s) 500, 547, 646
BshNI GGYRCC 1 cut(s) 423
BsiHKAI GWGCWC 3 cut(s) 29, 269, 672
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 2 cut(s) 415, 570
BslI CCNNNNNNNGG 3 cut(s) 407, 408, 636
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 3 cut(s) 500, 547, 646
BsoBI CYCGRG 1 cut(s) 576
Bsp120I GGGCCC 1 cut(s) 498
Bsp1286I GDGCHC 6 cut(s) 29, 172, 269, 428, 502, 672
Bsp143I GATC 4 cut(s) 49, 215, 319, 381
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 7 cut(s) 281, 398, 428, 508, 544, 662, 665
BspANI GGCC 3 cut(s) 500, 547, 646
BspFNI CGCG 4 cut(s) 248, 510, 662, 684
BspLI GGNNCC 3 cut(s) 413, 425, 500
BspT107I GGYRCC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 414
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 4 cut(s) 49, 215, 319, 381
BssSI CACGAG 2 cut(s) 622, 673
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 2 cut(s) 622, 673
Bst2UI CCWGG 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 428, 549
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 4 cut(s) 109, 436, 518, 553
BstFNI CGCG 4 cut(s) 248, 510, 662, 684
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 4 cut(s) 52, 218, 322, 384
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 4 cut(s) 49, 215, 319, 381
BstMWI GCNNNNNNNGC 2 cut(s) 235, 544
BstNI CCWGG 1 cut(s) 523
BstNSI RCATGY 2 cut(s) 179, 490
BstSCI CCNGG 1 cut(s) 521
BstSLI GKGCMC 3 cut(s) 172, 428, 502
BstUI CGCG 4 cut(s) 248, 510, 662, 684
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 3 cut(s) 500, 547, 646
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 4 cut(s) 109, 436, 518, 553
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 2 cut(s) 428, 549
CfoI GCGC 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 414
Cfr13I GGNCC 3 cut(s) 498, 499, 572
CseI GACGC 1 cut(s) 237
CviAII CATG 4 cut(s) 176, 330, 487, 690
CviJI RGCY 9 cut(s) 27, 229, 267, 397, 500, 547, 629, 646, 670
CviKI_1 RGCY 9 cut(s) 27, 229, 267, 397, 500, 547, 629, 646, 670
DpnI GATC 4 cut(s) 51, 217, 321, 383
DpnII GATC 4 cut(s) 49, 215, 319, 381
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 680
Ecl136II GAGCTC 3 cut(s) 27, 267, 670
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 4 cut(s) 29, 269, 502, 672
Eco47I GGWCC 1 cut(s) 572
Eco53kI GAGCTC 3 cut(s) 27, 267, 670
Eco88I CYCGRG 1 cut(s) 576
EcoICRI GAGCTC 3 cut(s) 27, 267, 670
EcoO109I RGGNCCY 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 4 cut(s) 29, 269, 502, 672
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 4 cut(s) 179, 333, 490, 693
FatI CATG 4 cut(s) 175, 329, 486, 689
FauI CCCGC 1 cut(s) 435
Fnu4HI GCNGC 4 cut(s) 82, 398, 545, 663
FokI GGATG 4 cut(s) 96, 423, 505, 540
FriOI GRGCYC 4 cut(s) 29, 269, 502, 672
Fsp4HI GCNGC 4 cut(s) 82, 398, 545, 663
FspAI RTGCGCAY 1 cut(s) 614
FspBI CTAG 3 cut(s) 125, 165, 230
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 1 cut(s) 614
GluI GCNGC 4 cut(s) 82, 398, 545, 663
HaeIII GGCC 3 cut(s) 500, 547, 646
HapII CCGG 2 cut(s) 415, 570
HgaI GACGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 615
Hin1II CATG 4 cut(s) 179, 333, 490, 693
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HinfI GANTC 4 cut(s) 184, 473, 514, 529
HpaII CCGG 2 cut(s) 415, 570
HphI GGTGA 1 cut(s) 497
Hpy188I TCNGA 3 cut(s) 368, 472, 558
Hpy188III TCNNGA 5 cut(s) 41, 120, 298, 379, 578
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 3 cut(s) 218, 512, 657
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 84, 135, 175, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 544
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 4 cut(s) 179, 333, 490, 693
HspAI GCGC 1 cut(s) 613
Kzo9I GATC 4 cut(s) 49, 215, 319, 381
LmnI GCTCC 2 cut(s) 24, 667
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 624
MaeI CTAG 3 cut(s) 125, 165, 230
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 242
MalI GATC 4 cut(s) 51, 217, 321, 383
MboI GATC 4 cut(s) 49, 215, 319, 381
MboII GAAGA 4 cut(s) 44, 62, 136, 593
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 6 cut(s) 29, 172, 269, 428, 502, 672
MluCI AATT 5 cut(s) 195, 202, 340, 361, 603
MluI ACGCGT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 4 cut(s) 84, 87, 305, 585
MseI TTAA 2 cut(s) 303, 386
MspI CCGG 2 cut(s) 415, 570
MspR9I CCNGG 1 cut(s) 523
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 523
MvnI CGCG 4 cut(s) 248, 510, 662, 684
MwoI GCNNNNNNNGC 2 cut(s) 235, 544
NcoI CCATGG 1 cut(s) 329
NdeII GATC 4 cut(s) 49, 215, 319, 381
NlaIII CATG 4 cut(s) 179, 333, 490, 693
NlaIV GGNNCC 3 cut(s) 413, 425, 500
NsbI TGCGCA 1 cut(s) 614
NspI RCATGY 2 cut(s) 179, 490
PaeR7I CTCGAG 1 cut(s) 576
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 3 cut(s) 184, 514, 529
PfoI TCCNGGA 1 cut(s) 521
PkrI GCNGC 4 cut(s) 83, 399, 546, 664
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
PscI ACATGT 1 cut(s) 486
PsiI TTATAA 1 cut(s) 101
Psp124BI GAGCTC 3 cut(s) 29, 269, 672
Psp6I CCWGG 1 cut(s) 521
PspGI CCWGG 1 cut(s) 521
PspN4I GGNNCC 3 cut(s) 413, 425, 500
PspOMI GGGCCC 1 cut(s) 498
PspPI GGNCC 3 cut(s) 498, 499, 572
PsuI RGATCY 1 cut(s) 215
SacI GAGCTC 3 cut(s) 29, 269, 672
SaqAI TTAA 2 cut(s) 303, 386
SatI GCNGC 4 cut(s) 82, 398, 545, 663
Sau3AI GATC 4 cut(s) 49, 215, 319, 381
Sau96I GGNCC 3 cut(s) 498, 499, 572
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 523
SduI GDGCHC 6 cut(s) 29, 172, 269, 428, 502, 672
SetI ASST 8 cut(s) 8, 29, 210, 231, 269, 279, 425, 672
SfaNI GCATC 1 cut(s) 624
Sfr274I CTCGAG 1 cut(s) 576
SinI GGWCC 1 cut(s) 572
SlaI CTCGAG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 5 cut(s) 195, 202, 340, 361, 603
SsiI CCGC 7 cut(s) 281, 398, 428, 508, 544, 662, 665
SspMI CTAG 3 cut(s) 125, 165, 230
SstI GAGCTC 3 cut(s) 29, 269, 672
StyD4I CCNGG 1 cut(s) 521
StyI CCWWGG 1 cut(s) 329
TaiI ACGT 1 cut(s) 279
TaqI TCGA 4 cut(s) 121, 269, 299, 577
TasI AATT 5 cut(s) 195, 202, 340, 361, 603
TauI GCSGC 3 cut(s) 400, 547, 665
TfiI GAWTC 3 cut(s) 184, 514, 529
Tru1I TTAA 2 cut(s) 303, 386
Tru9I TTAA 2 cut(s) 303, 386
TscAI CASTG 1 cut(s) 411
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 3 cut(s) 98, 200, 425
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 572
XapI RAATTY 2 cut(s) 340, 361
XceI RCATGY 2 cut(s) 179, 490
XhoI CTCGAG 1 cut(s) 576
XspI CTAG 3 cut(s) 125, 165, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.