Rroxscaffold_7G00159930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019526
Physical Location & Seq
Forward (+)
2963329 .. 2970849
7521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159930.1

Sequence Viewer

Length: 630 bp
ATGAAAGTTCCGATCGGCTACAATGAACTTCACGGCTCAAAATCGAGCTCCTTCGGCGAATCGCCGCAAAACACCACCACGTATGTGACAATGATGAAGAGGCGAGCTTGTCGGTGCCCGATTCCATCGTGGGTCCGCCGGAGAAGGAAAAAATTAGAGGAGAAAGAATCGGACCGAAAAGGAGAAAAGAATCGGGGAAGAAGAGACAGAAAACGGAACATTATAACACTTCATCCGTCATCTCGACTAGCACTTTGCAATGTAGTCTTCATAAATCTCCCAACTACTAGTGCCCTGCATGTTGTGATTCCTTATACAATTGCAAATTACCTTCATAGATCTACTTCAAAGATTGGCTCACTTGATGTTTGCAAGGCCGAGAACCACAACGCTAGCCGTATAACAAATGGCGCCGCTTCCACCATTCAAAACTCGGTCCCCTCCACCGTGTTCAACTACGCCGACGCCACCCTCGGTAGCCATCTAGCCGCCTCCTCGTCCAAATCGGCGTCACCGACGTCTTCACCATTTCCGACGCTAATCGACAACAAGACCTGCCGGAGAAGAGGAAGGAGATCGATCCCGAATTGTCGGCGTGAGAGAGAGAGAGAGGGGGGAAGAGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.48

Weight (kDa)

10.79

Isoelectric Point (pI)

67.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
AatII GACGTC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 563
AccB1I GGYRCC 2 cut(s) 114, 410
AciI CCGC 4 cut(s) 65, 136, 414, 489
AclWI GGATC 1 cut(s) 574
AcyI GRCGYC 4 cut(s) 411, 465, 509, 518
AgsI TTSAA 3 cut(s) 348, 428, 454
AhlI ACTAGT 1 cut(s) 287
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 2 cut(s) 48, 107
AluI AGCT 2 cut(s) 48, 107
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 574
AoxI GGCC 1 cut(s) 375
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 3 cut(s) 133, 172, 436
AsuHPI GGTGA 2 cut(s) 504, 516
AsuNHI GCTAGC 1 cut(s) 392
AvaII GGWCC 3 cut(s) 133, 172, 436
BaeGI GKGCMC 2 cut(s) 119, 295
BanI GGYRCC 2 cut(s) 114, 410
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 259, 513
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 2 cut(s) 133, 489
BceAI ACGGC 2 cut(s) 49, 381
BcoDI GTCTC 1 cut(s) 198
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 4 cut(s) 248, 288, 393, 485
BfoI RGCGCY 1 cut(s) 414
BfuAI ACCTGC 1 cut(s) 563
BglII AGATCT 1 cut(s) 338
BisI GCNGC 3 cut(s) 65, 414, 489
BlsI GCNGC 3 cut(s) 66, 415, 490
Bme18I GGWCC 3 cut(s) 133, 172, 436
BmgT120I GGNCC 3 cut(s) 133, 172, 436
BmiI GGNNCC 4 cut(s) 116, 134, 412, 438
BmtI GCTAGC 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 259, 513
Bsa29I ATCGAT 1 cut(s) 578
BsaAI YACGTR 1 cut(s) 81
BsaHI GRCGYC 4 cut(s) 411, 465, 509, 518
BsaJI CCNNGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 265
BseCI ATCGAT 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 173, 484
BseSI GKGCMC 2 cut(s) 119, 295
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 2 cut(s) 114, 410
BshVI ATCGAT 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 2 cut(s) 139, 559
BslFI GGGAC 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 3 cut(s) 50, 119, 295
Bsp143I GATC 4 cut(s) 12, 338, 575, 579
BspACI CCGC 4 cut(s) 65, 136, 414, 489
BspANI GGCC 1 cut(s) 377
BspDI ATCGAT 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 116, 134, 412, 438
BspMI ACCTGC 1 cut(s) 563
BspOI GCTAGC 1 cut(s) 396
BspPI GGATC 1 cut(s) 574
BspT107I GGYRCC 2 cut(s) 114, 410
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 4 cut(s) 12, 338, 575, 579
BssNI GRCGYC 4 cut(s) 411, 465, 509, 518
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 4 cut(s) 92, 196, 559, 613
BstACI GRCGYC 4 cut(s) 411, 465, 509, 518
BstBAI YACGTR 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 105, 394
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 4 cut(s) 15, 341, 578, 582
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 4 cut(s) 12, 338, 575, 579
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 302
BstSLI GKGCMC 2 cut(s) 119, 295
BstV2I GAAGAC 2 cut(s) 259, 513
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
Bsu15I ATCGAT 1 cut(s) 578
BsuRI GGCC 1 cut(s) 377
BsuTUI ATCGAT 1 cut(s) 578
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 105, 394
CfoI GCGC 1 cut(s) 413
Cfr13I GGNCC 3 cut(s) 133, 172, 436
ClaI ATCGAT 1 cut(s) 578
CpoI CGGWCCG 1 cut(s) 172
CseI GACGC 3 cut(s) 473, 498, 544
CspI CGGWCCG 1 cut(s) 172
CviAII CATG 1 cut(s) 299
CviJI RGCY 9 cut(s) 18, 36, 48, 107, 357, 377, 396, 480, 488
CviKI_1 RGCY 9 cut(s) 18, 36, 48, 107, 357, 377, 396, 480, 488
DinI GGCGCC 1 cut(s) 412
DpnI GATC 4 cut(s) 14, 340, 577, 581
DpnII GATC 4 cut(s) 12, 338, 575, 579
Eam1104I CTCTTC 4 cut(s) 92, 196, 559, 613
EarI CTCTTC 4 cut(s) 92, 196, 559, 613
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 3 cut(s) 133, 172, 436
Eco53kI GAGCTC 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 50
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
FaeI CATG 1 cut(s) 302
FaiI YATR 7 cut(s) 84, 224, 272, 300, 315, 336, 401
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 65, 414, 489
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 3 cut(s) 65, 414, 489
FspBI CTAG 4 cut(s) 248, 288, 393, 485
GlaI GCGC 1 cut(s) 412
GluI GCNGC 3 cut(s) 65, 414, 489
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 1 cut(s) 377
HapII CCGG 2 cut(s) 139, 559
HgaI GACGC 3 cut(s) 473, 498, 544
HhaI GCGC 1 cut(s) 413
Hin1I GRCGYC 4 cut(s) 411, 465, 509, 518
Hin1II CATG 1 cut(s) 302
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HinfI GANTC 5 cut(s) 59, 121, 167, 190, 307
HpaII CCGG 2 cut(s) 139, 559
HphI GGTGA 2 cut(s) 504, 516
Hpy188I TCNGA 3 cut(s) 12, 172, 534
Hpy188III TCNNGA 2 cut(s) 243, 583
Hpy99I CGWCG 3 cut(s) 467, 520, 538
HpyAV CCTTC 4 cut(s) 61, 138, 341, 564
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 80, 518
HpyCH4V TGCA 4 cut(s) 258, 298, 323, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpySE526I ACGT 2 cut(s) 80, 518
Hsp92I GRCGYC 4 cut(s) 411, 465, 509, 518
Hsp92II CATG 1 cut(s) 302
HspAI GCGC 1 cut(s) 411
KasI GGCGCC 1 cut(s) 410
Kzo9I GATC 4 cut(s) 12, 338, 575, 579
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 152, 308, 568, 572
MaeI CTAG 4 cut(s) 248, 288, 393, 485
MaeII ACGT 2 cut(s) 80, 518
MaeIII GTNAC 2 cut(s) 85, 510
MalI GATC 4 cut(s) 14, 340, 577, 581
MboI GATC 4 cut(s) 12, 338, 575, 579
MboII GAAGA 7 cut(s) 109, 210, 213, 259, 513, 576, 630
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 3 cut(s) 50, 119, 295
MluCI AATT 4 cut(s) 152, 318, 325, 586
Mly113I GGCGCC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 9 cut(s) 93, 151, 451, 482, 502, 505, 560, 604, 618
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 139, 559
MunI CAATTG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 411
NdeII GATC 4 cut(s) 12, 338, 575, 579
NheI GCTAGC 1 cut(s) 392
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 4 cut(s) 116, 134, 412, 438
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 85, 510
NspI RCATGY 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PfeI GAWTC 5 cut(s) 59, 121, 167, 190, 307
PkrI GCNGC 3 cut(s) 66, 415, 490
Ple19I CGATCG 1 cut(s) 15
PluTI GGCGCC 1 cut(s) 414
Ppu21I YACGTR 1 cut(s) 81
PsiI TTATAA 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 50
PspN4I GGNNCC 4 cut(s) 116, 134, 412, 438
PspPI GGNCC 3 cut(s) 133, 172, 436
PsuI RGATCY 1 cut(s) 338
PvuI CGATCG 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 83
Rsr2I CGGWCCG 1 cut(s) 172
RsrII CGGWCCG 1 cut(s) 172
SacI GAGCTC 1 cut(s) 50
SatI GCNGC 3 cut(s) 65, 414, 489
Sau3AI GATC 4 cut(s) 12, 338, 575, 579
Sau96I GGNCC 3 cut(s) 133, 172, 436
SduI GDGCHC 3 cut(s) 50, 119, 295
SetI ASST 7 cut(s) 50, 83, 109, 333, 521, 557, 629
SfoI GGCGCC 1 cut(s) 412
SinI GGWCC 3 cut(s) 133, 172, 436
SmiMI CAYNNNNRTG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 4 cut(s) 152, 318, 325, 586
SsiI CCGC 4 cut(s) 65, 136, 414, 489
SspDI GGCGCC 1 cut(s) 410
SspMI CTAG 4 cut(s) 248, 288, 393, 485
SstI GAGCTC 1 cut(s) 50
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 2 cut(s) 83, 521
TaqI TCGA 4 cut(s) 44, 244, 543, 578
TaqII GACCGA 2 cut(s) 189, 424
TasI AATT 4 cut(s) 152, 318, 325, 586
TauI GCSGC 3 cut(s) 67, 416, 491
TfiI GAWTC 5 cut(s) 59, 121, 167, 190, 307
TseFI GTSAC 2 cut(s) 85, 510
Tsp45I GTSAC 2 cut(s) 85, 510
TspDTI ATGAA 6 cut(s) 17, 39, 110, 221, 259, 323
TspGWI ACGGA 2 cut(s) 225, 229
VpaK11BI GGWCC 3 cut(s) 133, 172, 436
XceI RCATGY 1 cut(s) 302
XspI CTAG 4 cut(s) 248, 288, 393, 485
ZraI GACGTC 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.