Rroxscaffold_5G00338530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019526
Physical Location & Seq
Forward (+)
6724855 .. 6725525
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338530.1

Sequence Viewer

Length: 510 bp
ATGGGCGAACCCGTAACCCCAACCCAAGAAGACTTAATTTTGGGCCGCGGGTATCAGCACGCTATGCTAAATCCCCTAAAGGGATCTTGCCAAAAATACTTTTGGGCTCAAACATTGCCCCCTAGGCCTCGAGATCGGACCAGCGAAAAATGTAACGATCGAAGAGGACTAAACAATGCGACCGATGGTGGAAACGAGGCCATTAATGAAGAAACCCGAAATGGCTCCATCCAAGAAGGTCGTCATCGATCAAGAGGAGGAGATCAACGAGAATGCTGCTCATACCTAGGGAATCGCATCCGTGCCCGCCGCTTCACCACACCACCGTCTAGAGACCTCTACTCCTCGTACTCCCCAACCATCGGGTGGCCGGGTCCTACTAGACGAGATGTCATTCCGGAGGACGCTCTCACCCTTTATGGTCTACCCATCCGTCGACCCATTCCAGCCCTCCGAATGACCCTTGGAGATTTCAGCGGTTGGGGTGCGCATCCGCACGAGCCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.06

Weight (kDa)

9.41

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 366
AccI GTMKAC 2 cut(s) 424, 436
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 397
AciI CCGC 6 cut(s) 46, 48, 307, 310, 477, 494
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 368
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 80, 362, 366
AhdI GACNNNNNGTC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 129
Aor13HI TCCGGA 1 cut(s) 397
AoxI GGCC 4 cut(s) 43, 125, 198, 368
ApeKI GCWGC 1 cut(s) 276
AseI ATTAAT 1 cut(s) 204
AspA2I CCTAGG 2 cut(s) 122, 286
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 43, 138, 374
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 307, 403
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 2 cut(s) 138, 374
AvrII CCTAGG 2 cut(s) 122, 286
BaeGI GKGCMC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 109
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 263
BccI CCATC 4 cut(s) 179, 236, 368, 437
BcgI CGANNNNNNTGC 2 cut(s) 258, 292
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 4 cut(s) 123, 287, 330, 381
BglI GCCNNNNNGGC 1 cut(s) 124
BisI GCNGC 3 cut(s) 46, 277, 310
BlnI CCTAGG 2 cut(s) 122, 286
BlsI GCNGC 3 cut(s) 47, 278, 311
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 2 cut(s) 138, 374
BmeRI GACNNNNNGTC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 3 cut(s) 43, 138, 374
BmiI GGNNCC 2 cut(s) 226, 375
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 306, 499
BpiI GAAGAC 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 372
Bsa29I ATCGAT 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 4 cut(s) 46, 122, 286, 463
BsaWI WCCGGW 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 362, 366
Bse3DI GCAATG 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 397
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 4 cut(s) 46, 122, 286, 463
BseGI GGATG 4 cut(s) 228, 297, 429, 490
BseLI CCNNNNNNNGG 3 cut(s) 80, 362, 366
BseMI GCAATG 1 cut(s) 113
BseRI GAGGAG 3 cut(s) 270, 273, 334
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 2 cut(s) 160, 183
BshFI GGCC 4 cut(s) 45, 127, 200, 370
BshVI ATCGAT 1 cut(s) 247
BsiEI CGRYCG 2 cut(s) 160, 183
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 2 cut(s) 371, 398
BslI CCNNNNNNNGG 3 cut(s) 80, 362, 366
BsmAI GTCTC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 4 cut(s) 45, 127, 200, 370
Bso31I GGTCTC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 109, 307
Bsp13I TCCGGA 1 cut(s) 397
Bsp143I GATC 5 cut(s) 83, 133, 157, 248, 262
BspACI CCGC 6 cut(s) 46, 48, 307, 310, 477, 494
BspANI GGCC 4 cut(s) 45, 127, 200, 370
BspDI ATCGAT 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 397
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 226, 375
BspPI GGATC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 46, 122, 286, 463
BssMI GATC 5 cut(s) 83, 133, 157, 248, 262
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 3 cut(s) 122, 286, 463
Bst2BI CACGAG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 60, 307
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 4 cut(s) 228, 297, 429, 490
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 5 cut(s) 86, 136, 160, 251, 265
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 5 cut(s) 83, 133, 157, 248, 262
BstMCI CGRYCG 2 cut(s) 160, 183
BstMWI GCNNNNNNNGC 2 cut(s) 64, 124
BstSCI CCNGG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 307
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 247
BsuRI GGCC 4 cut(s) 45, 127, 200, 370
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 4 cut(s) 228, 297, 429, 490
Cac8I GCNNGC 2 cut(s) 60, 307
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 3 cut(s) 43, 138, 374
Cfr42I CCGCGG 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 247
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 349
CviJI RGCY 8 cut(s) 45, 107, 127, 200, 225, 370, 449, 502
CviKI_1 RGCY 8 cut(s) 45, 107, 127, 200, 225, 370, 449, 502
CviQI GTAC 1 cut(s) 349
DpnI GATC 5 cut(s) 85, 135, 159, 250, 264
DpnII GATC 5 cut(s) 83, 133, 157, 248, 262
DriI GACNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 3 cut(s) 122, 286, 463
Eco147I AGGCCT 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 138, 374
Eco88I CYCGRG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 374
EcoT14I CCWWGG 3 cut(s) 122, 286, 463
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 3 cut(s) 122, 286, 463
FaiI YATR 3 cut(s) 65, 283, 420
FauI CCCGC 2 cut(s) 41, 314
FblI GTMKAC 2 cut(s) 424, 436
Fnu4HI GCNGC 3 cut(s) 46, 277, 310
FokI GGATG 4 cut(s) 215, 284, 416, 477
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 46, 277, 310
FspAI RTGCGCAY 1 cut(s) 489
FspBI CTAG 4 cut(s) 123, 287, 330, 381
FspI TGCGCA 1 cut(s) 489
GlaI GCGC 1 cut(s) 489
GluI GCNGC 3 cut(s) 46, 277, 310
HaeIII GGCC 4 cut(s) 45, 127, 200, 370
HapII CCGG 2 cut(s) 371, 398
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 490
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HinfI GANTC 1 cut(s) 292
HpaII CCGG 2 cut(s) 371, 398
HphI GGTGA 2 cut(s) 307, 403
Hpy166II GTNNAC 2 cut(s) 425, 437
Hpy188I TCNGA 2 cut(s) 138, 455
Hpy188III TCNNGA 4 cut(s) 131, 252, 330, 398
Hpy8I GTNNAC 2 cut(s) 425, 437
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 124
HspAI GCGC 1 cut(s) 488
Kpn2I TCCGGA 1 cut(s) 397
KspI CCGCGG 1 cut(s) 49
Kzo9I GATC 5 cut(s) 83, 133, 157, 248, 262
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 4 cut(s) 154, 384, 411, 459
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 2 cut(s) 306, 499
MaeI CTAG 4 cut(s) 123, 287, 330, 381
MaeIII GTNAC 2 cut(s) 13, 152
MalI GATC 5 cut(s) 85, 135, 159, 250, 264
MboI GATC 5 cut(s) 83, 133, 157, 248, 262
MboII GAAGA 3 cut(s) 41, 174, 221
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 2 cut(s) 109, 307
MluCI AATT 1 cut(s) 36
MnlI CCTC 9 cut(s) 138, 158, 190, 248, 251, 347, 355, 394, 461
MroI TCCGGA 1 cut(s) 397
MseI TTAA 2 cut(s) 35, 204
MspA1I CMGCKG 2 cut(s) 48, 477
MspI CCGG 2 cut(s) 371, 398
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 278
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 64, 124
NciI CCSGG 1 cut(s) 372
NdeII GATC 5 cut(s) 83, 133, 157, 248, 262
NlaIV GGNNCC 2 cut(s) 226, 375
NsbI TGCGCA 1 cut(s) 489
PaeR7I CTCGAG 1 cut(s) 129
PceI AGGCCT 1 cut(s) 127
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 3 cut(s) 47, 278, 311
Ple19I CGATCG 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 226, 375
PspPI GGNCC 3 cut(s) 43, 138, 374
PspPPI RGGWCCY 1 cut(s) 374
PsuI RGATCY 1 cut(s) 83
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SacII CCGCGG 1 cut(s) 49
SalI GTCGAC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 35, 204
SatI GCNGC 3 cut(s) 46, 277, 310
Sau3AI GATC 5 cut(s) 83, 133, 157, 248, 262
Sau96I GGNCC 3 cut(s) 43, 138, 374
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 109, 307
SetI ASST 3 cut(s) 241, 288, 339
SfaNI GCATC 2 cut(s) 306, 499
Sfr274I CTCGAG 1 cut(s) 129
Sfr303I CCGCGG 1 cut(s) 49
SgrBI CCGCGG 1 cut(s) 49
SinI GGWCC 2 cut(s) 138, 374
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 1 cut(s) 36
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 6 cut(s) 46, 48, 307, 310, 477, 494
SspMI CTAG 4 cut(s) 123, 287, 330, 381
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 3 cut(s) 122, 286, 463
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 4 cut(s) 130, 160, 247, 436
TaqII GACCGA 1 cut(s) 197
TasI AATT 1 cut(s) 36
TauI GCSGC 2 cut(s) 48, 312
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 35, 204
Tru9I TTAA 2 cut(s) 35, 204
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 2 cut(s) 290, 422
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 2 cut(s) 138, 374
VspI ATTAAT 1 cut(s) 204
XbaI TCTAGA 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 129
XmaJI CCTAGG 2 cut(s) 122, 286
XmiI GTMKAC 2 cut(s) 424, 436
XspI CTAG 4 cut(s) 123, 287, 330, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.