The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_roxburghii | Rroxscaffold_3G00268190 Rroxscaffold_5G00338530 Rroxscaffold_5G00349380 Rroxscaffold_6G00419790 Rroxscaffold_7G00159930 Rroxscaffold_7G00171370 Rroxscaffold_7G00178720 |
| rosa_samantha | Rh6DG487200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 41 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 269 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 235, 266, 269 |
| AgsI | TTSAA | 2 cut(s) | 168, 224 |
| AhlI | ACTAGT | 1 cut(s) | 104 |
| AleI | CACNNNNGTG | 1 cut(s) | 358 |
| AluBI | AGCT | 1 cut(s) | 279 |
| AluI | AGCT | 1 cut(s) | 279 |
| Alw26I | GTCTC | 1 cut(s) | 184 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 54, 86 |
| BaeGI | GKGCMC | 1 cut(s) | 112 |
| BbsI | GAAGAC | 1 cut(s) | 76 |
| BccI | CCATC | 2 cut(s) | 229, 310 |
| BcoDI | GTCTC | 1 cut(s) | 184 |
| BcuI | ACTAGT | 1 cut(s) | 104 |
| BfaI | CTAG | 2 cut(s) | 65, 105 |
| BglII | AGATCT | 1 cut(s) | 158 |
| BmiI | GGNNCC | 1 cut(s) | 351 |
| BmsI | GCATC | 1 cut(s) | 294 |
| BpiI | GAAGAC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 1 cut(s) | 249 |
| BsaWI | WCCGGW | 1 cut(s) | 346 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 235, 266, 269 |
| Bse3DI | GCAATG | 1 cut(s) | 82 |
| BseDI | CCNNGG | 1 cut(s) | 249 |
| BseGI | GGATG | 3 cut(s) | 49, 259, 321 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 235, 266, 269 |
| BseMI | GCAATG | 1 cut(s) | 82 |
| BseRI | GAGGAG | 1 cut(s) | 187 |
| BseSI | GKGCMC | 1 cut(s) | 112 |
| BsiSI | CCGG | 1 cut(s) | 347 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 235, 266, 269 |
| BsmAI | GTCTC | 1 cut(s) | 184 |
| BsmBI | CGTCTC | 1 cut(s) | 184 |
| BsmI | GAATGC | 1 cut(s) | 304 |
| Bsp1286I | GDGCHC | 1 cut(s) | 112 |
| Bsp143I | GATC | 3 cut(s) | 158, 184, 283 |
| Bsp19I | CCATGG | 1 cut(s) | 249 |
| BspLI | GGNNCC | 1 cut(s) | 351 |
| BsrDI | GCAATG | 1 cut(s) | 82 |
| BssECI | CCNNGG | 1 cut(s) | 249 |
| BssMI | GATC | 3 cut(s) | 158, 184, 283 |
| BssT1I | CCWWGG | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 1 cut(s) | 30 |
| BstDEI | CTNAG | 1 cut(s) | 240 |
| BstDSI | CCRYGG | 1 cut(s) | 249 |
| BstF5I | GGATG | 3 cut(s) | 49, 259, 321 |
| BstKTI | GATC | 3 cut(s) | 161, 187, 286 |
| BstMAI | GTCTC | 1 cut(s) | 184 |
| BstMBI | GATC | 3 cut(s) | 158, 184, 283 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 245 |
| BstNSI | RCATGY | 2 cut(s) | 32, 119 |
| BstSLI | GKGCMC | 1 cut(s) | 112 |
| BstV2I | GAAGAC | 1 cut(s) | 76 |
| BstX2I | RGATCY | 1 cut(s) | 158 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 360 |
| BstYI | RGATCY | 1 cut(s) | 158 |
| BtgI | CCRYGG | 1 cut(s) | 249 |
| BtgZI | GCGATG | 1 cut(s) | 317 |
| BtsCI | GGATG | 3 cut(s) | 49, 259, 321 |
| Cac8I | GCNNGC | 1 cut(s) | 30 |
| CviAII | CATG | 3 cut(s) | 29, 116, 250 |
| CviJI | RGCY | 4 cut(s) | 239, 248, 279, 327 |
| CviKI_1 | RGCY | 4 cut(s) | 239, 248, 279, 327 |
| DdeI | CTNAG | 1 cut(s) | 240 |
| DpnI | GATC | 3 cut(s) | 160, 186, 285 |
| DpnII | GATC | 3 cut(s) | 158, 184, 283 |
| DraI | TTTAAA | 1 cut(s) | 16 |
| Eco130I | CCWWGG | 1 cut(s) | 249 |
| EcoT14I | CCWWGG | 1 cut(s) | 249 |
| ErhI | CCWWGG | 1 cut(s) | 249 |
| Esp3I | CGTCTC | 1 cut(s) | 184 |
| FaeI | CATG | 3 cut(s) | 32, 119, 253 |
| FaiI | YATR | 7 cut(s) | 30, 41, 89, 117, 132, 156, 251 |
| FatI | CATG | 3 cut(s) | 28, 115, 249 |
| FokI | GGATG | 3 cut(s) | 36, 266, 328 |
| FspBI | CTAG | 2 cut(s) | 65, 105 |
| HapII | CCGG | 1 cut(s) | 347 |
| Hin1II | CATG | 3 cut(s) | 32, 119, 253 |
| HinfI | GANTC | 2 cut(s) | 124, 172 |
| HpaII | CCGG | 1 cut(s) | 347 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 189 |
| Hpy188III | TCNNGA | 1 cut(s) | 60 |
| Hpy99I | CGWCG | 3 cut(s) | 205, 211, 312 |
| HpyAV | CCTTC | 2 cut(s) | 161, 306 |
| HpyCH4V | TGCA | 5 cut(s) | 28, 32, 75, 115, 140 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 245 |
| HpyF3I | CTNAG | 1 cut(s) | 240 |
| Hsp92II | CATG | 3 cut(s) | 32, 119, 253 |
| Kzo9I | GATC | 3 cut(s) | 158, 184, 283 |
| LpnPI | CCDG | 2 cut(s) | 125, 360 |
| LweI | GCATC | 1 cut(s) | 294 |
| MaeI | CTAG | 2 cut(s) | 65, 105 |
| MalI | GATC | 3 cut(s) | 160, 186, 285 |
| MboI | GATC | 3 cut(s) | 158, 184, 283 |
| MboII | GAAGA | 1 cut(s) | 76 |
| MfeI | CAATTG | 1 cut(s) | 135 |
| MflI | RGATCY | 1 cut(s) | 158 |
| MhlI | GDGCHC | 1 cut(s) | 112 |
| MluCI | AATT | 3 cut(s) | 17, 135, 142 |
| MnlI | CCTC | 3 cut(s) | 208, 270, 341 |
| MseI | TTAA | 2 cut(s) | 15, 20 |
| MslI | CAYNNNNRTG | 1 cut(s) | 358 |
| MspI | CCGG | 1 cut(s) | 347 |
| MunI | CAATTG | 1 cut(s) | 135 |
| Mva1269I | GAATGC | 1 cut(s) | 304 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 245 |
| NcoI | CCATGG | 1 cut(s) | 249 |
| NdeII | GATC | 3 cut(s) | 158, 184, 283 |
| NlaIII | CATG | 3 cut(s) | 32, 119, 253 |
| NlaIV | GGNNCC | 1 cut(s) | 351 |
| NspI | RCATGY | 2 cut(s) | 32, 119 |
| OliI | CACNNNNGTG | 1 cut(s) | 358 |
| PaeI | GCATGC | 1 cut(s) | 32 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 206 |
| PctI | GAATGC | 1 cut(s) | 304 |
| PfeI | GAWTC | 2 cut(s) | 124, 172 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 269 |
| PsiI | TTATAA | 1 cut(s) | 41 |
| PspN4I | GGNNCC | 1 cut(s) | 351 |
| PsuI | RGATCY | 1 cut(s) | 158 |
| RseI | CAYNNNNRTG | 1 cut(s) | 358 |
| SaqAI | TTAA | 2 cut(s) | 15, 20 |
| Sau3AI | GATC | 3 cut(s) | 158, 184, 283 |
| SduI | GDGCHC | 1 cut(s) | 112 |
| SetI | ASST | 4 cut(s) | 153, 217, 281, 333 |
| SfaNI | GCATC | 1 cut(s) | 294 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 358 |
| SpeI | ACTAGT | 1 cut(s) | 104 |
| SphI | GCATGC | 1 cut(s) | 32 |
| Sse9I | AATT | 3 cut(s) | 17, 135, 142 |
| SspI | AATATT | 1 cut(s) | 37 |
| SspMI | CTAG | 2 cut(s) | 65, 105 |
| StyI | CCWWGG | 1 cut(s) | 249 |
| TaqI | TCGA | 1 cut(s) | 61 |
| TasI | AATT | 3 cut(s) | 17, 135, 142 |
| TfiI | GAWTC | 2 cut(s) | 124, 172 |
| Tru1I | TTAA | 2 cut(s) | 15, 20 |
| Tru9I | TTAA | 2 cut(s) | 15, 20 |
| TspDTI | ATGAA | 3 cut(s) | 38, 76, 143 |
| TspGWI | ACGGA | 1 cut(s) | 42 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 269 |
| XceI | RCATGY | 2 cut(s) | 32, 119 |
| XspI | CTAG | 2 cut(s) | 65, 105 |