Rroxscaffold_3G00270120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016337
Physical Location & Seq
Forward (+)
62760558 .. 62761389
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270120.1

Sequence Viewer

Length: 489 bp
ATGGTGTCTTTAAGCTTCAATATTATCACCTTTCTAGTACTAATGGTGCTCCCTCTGCTACATGTAACTCAGTCAGCTAGCACTGCAGATATGAGTGAAGTACCGGCTTCTGGTGATCATGAAACTATTAACCCAGTAGTTGTGCCAAGAATGGGCACCCTGAATCTGAATCAACAGGAAACCTATGAAGTTTCAAACAGGAGATTTCTTGGGAGGAAGATGATGTTTAAAAGGATTTTGGGAATGGTAAAAGAGGAAGTAGGATACTTAAATGGAGGACAATCTTCCAAGAGTACTGCTACTTCATCAGGTTCTGCGCATCCTGTCAAAAACAGTATCAATATCAATGTACGACCACAAAGATTGAGAAACATTAGTAAAGGACGTCCTCATACTCATCGTCGTGTGAAGGTGAAAATAGCTGATAACTTTATACCTTTGAATGCTGATTATCATGTTCCGAGACCTCACCCGCCCAAGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.09

Weight (kDa)

10.59

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 388
Acc16I TGCGCA 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 385
AfaI GTAC 4 cut(s) 39, 102, 295, 351
AfiI CCNNNNNNNGG 2 cut(s) 110, 152
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 3 cut(s) 19, 195, 442
AluBI AGCT 3 cut(s) 15, 77, 422
AluI AGCT 3 cut(s) 15, 77, 422
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 457
AlwNI CAGNNNCTG 1 cut(s) 314
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 19, 125, 424, 461
AsuNHI GCTAGC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
Bbv12I GWGCWC 1 cut(s) 51
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 2 cut(s) 35, 78
BfmI CTRYAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 257
BmcAI AGTACT 2 cut(s) 39, 295
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 328
BmtI GCTAGC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 152
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 110, 152
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 110, 152
BsmAI GTCTC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 448
Bso31I GGTCTC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 51, 158
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 88
BspOI GCTAGC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 319
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 55, 83
BstNSI RCATGY 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 158
BsuI GTATCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 314
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 103
Csp6I GTAC 4 cut(s) 38, 101, 294, 350
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 3 cut(s) 62, 119, 455
CviJI RGCY 4 cut(s) 15, 77, 107, 422
CviKI_1 RGCY 4 cut(s) 15, 77, 107, 422
CviQI GTAC 4 cut(s) 38, 101, 294, 350
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
DraI TTTAAA 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 457
FaeI CATG 3 cut(s) 65, 122, 458
FaiI YATR 7 cut(s) 63, 92, 120, 186, 393, 434, 456
FatI CATG 3 cut(s) 61, 118, 454
FauI CCCGC 1 cut(s) 480
FbaI TGATCA 1 cut(s) 115
FokI GGATG 1 cut(s) 306
FspBI CTAG 2 cut(s) 35, 78
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 385
Hin1II CATG 3 cut(s) 65, 122, 458
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 163, 169
HpaII CCGG 1 cut(s) 104
HphI GGTGA 4 cut(s) 19, 125, 424, 461
Hpy188I TCNGA 2 cut(s) 168, 462
Hpy188III TCNNGA 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 83
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 385
Hsp92I GRCGYC 1 cut(s) 385
Hsp92II CATG 3 cut(s) 65, 122, 458
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 8 cut(s) 96, 117, 147, 161, 173, 184, 294, 336
LweI GCATC 1 cut(s) 328
MaeI CTAG 2 cut(s) 35, 78
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 2 cut(s) 229, 276
MhlI GDGCHC 2 cut(s) 51, 158
MnlI CCTC 6 cut(s) 63, 207, 247, 269, 399, 477
MseI TTAA 4 cut(s) 11, 129, 228, 269
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 55, 83
NdeII GATC 1 cut(s) 115
NheI GCTAGC 1 cut(s) 77
NlaIII CATG 3 cut(s) 65, 122, 458
NlaIV GGNNCC 1 cut(s) 157
NsbI TGCGCA 1 cut(s) 318
NspI RCATGY 1 cut(s) 65
PagI TCATGA 1 cut(s) 118
PciI ACATGT 1 cut(s) 61
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 2 cut(s) 163, 169
PscI ACATGT 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 314
RsaI GTAC 4 cut(s) 39, 102, 295, 351
RsaNI GTAC 4 cut(s) 38, 101, 294, 350
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 4 cut(s) 11, 129, 228, 269
Sau3AI GATC 1 cut(s) 115
ScaI AGTACT 2 cut(s) 39, 295
SduI GDGCHC 2 cut(s) 51, 158
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 402
SsiI CCGC 1 cut(s) 473
SspI AATATT 1 cut(s) 22
SspMI CTAG 2 cut(s) 35, 78
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 388
TatI WGTACW 2 cut(s) 37, 293
TfiI GAWTC 2 cut(s) 163, 169
Tru1I TTAA 4 cut(s) 11, 129, 228, 269
Tru9I TTAA 4 cut(s) 11, 129, 228, 269
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 135, 201, 294
TspRI CASTG 1 cut(s) 88
XceI RCATGY 1 cut(s) 65
XspI CTAG 2 cut(s) 35, 78
ZraI GACGTC 1 cut(s) 386
ZrmI AGTACT 2 cut(s) 39, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.