Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016337

Physical Location & Seq

Genomic Coordinates Reverse (-)

4127761 .. 4128656

Gene Structure 896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG062200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGCTCCCTCTGCTACATGTAACTCAGTCAGCTAGCACTGCAGATATGAGTGAAGTACCGGCTTCTGGTGATCATGAAACTATTAAACCAGTAGTTGTGCCAAGAATGGGCACCCTGAATATGAATCAACAGGAAACCTATGAAGTTTCAAATAGGAGATTTCTTGGGAGGAAGATGATGTTTAAAAGGATTTTGGGAACGGTAAAAGAGGAAGCAGGATACTTAAATGGAGGACAATCTTCCAAGAGTACTGCTACTTCATCAGGTTCTGCGCATCCTGTCAAAAACAGTATCAATATCGATGTACGACCACAAAGATTGAGAAACATTAGTAGAGGACGTCCTCATACTCATCGTCGTGTGAAGGTGAAAATAGCTGGTAACTTTATACCTTTGAATGCTGATTATCATGTTCCGAGACCTCACCCGCCCAAGAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.43

Weight (kDa)

10.77

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13290
prunus_persica	Prupe.5G210900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416771 RchiOBHm_Chr5g0036501
rosa_laevigata	RLG00000005015
rosa_roxburghii	Rroxscaffold_3G00270120 Rroxscaffold_3G00273890 Rroxscaffold_7G00189790
rosa_rugosa	Rorug06G0459000 Rorug06G0461200
rosa_samantha	Rh6DG319700 Rh7AG062000 Rh7BG062200 Rh7CG063600 Rh7DG061800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	346
Acc16I	TGCGCA	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	343
AfaI	GTAC	3 cut(s)	60, 253, 309
AfiI	CCNNNNNNNGG	2 cut(s)	68, 110
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	153, 400
AluBI	AGCT	2 cut(s)	35, 380
AluI	AGCT	2 cut(s)	35, 380
Alw26I	GTCTC	1 cut(s)	415
AlwNI	CAGNNNCTG	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	7, 277
AsuHPI	GGTGA	3 cut(s)	83, 382, 419
AsuNHI	GCTAGC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	113
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
BciVI	GTATCC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	1 cut(s)	286
BmtI	GCTAGC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 110
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	303
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	68, 110
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	68, 110
BsmAI	GTCTC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	406
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	46
BspOI	GCTAGC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	205, 293
BstACI	GRCGYC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 277
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 41
BstNSI	RCATGY	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	2 cut(s)	7, 277
Cfr10I	RCCGGY	1 cut(s)	61
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	59, 252, 308
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	3 cut(s)	20, 77, 413
CviJI	RGCY	3 cut(s)	35, 65, 380
CviKI_1	RGCY	3 cut(s)	35, 65, 380
CviQI	GTAC	3 cut(s)	59, 252, 308
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DraI	TTTAAA	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	415
FaeI	CATG	3 cut(s)	23, 80, 416
FaiI	YATR	8 cut(s)	21, 50, 78, 125, 144, 351, 392, 414
FatI	CATG	3 cut(s)	19, 76, 412
FauI	CCCGC	1 cut(s)	438
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	1 cut(s)	264
FspBI	CTAG	1 cut(s)	36
FspI	TGCGCA	1 cut(s)	276
GlaI	GCGC	2 cut(s)	6, 276
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	2 cut(s)	7, 277
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	23, 80, 416
Hin6I	GCGC	2 cut(s)	5, 275
HinP1I	GCGC	2 cut(s)	5, 275
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	3 cut(s)	83, 382, 419
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	2 cut(s)	205, 293
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 41
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	23, 80, 416
HspAI	GCGC	2 cut(s)	5, 275
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	9 cut(s)	54, 75, 105, 119, 131, 204, 252, 294, 366
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	22, 383
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	2 cut(s)	187, 234
MhlI	GDGCHC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	21, 165, 205, 227, 332, 357, 435
MseI	TTAA	3 cut(s)	87, 186, 227
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	13, 41
NdeII	GATC	1 cut(s)	73
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	23, 80, 416
NlaIV	GGNNCC	1 cut(s)	115
NsbI	TGCGCA	1 cut(s)	276
NspI	RCATGY	1 cut(s)	23
PagI	TCATGA	1 cut(s)	76
PciI	ACATGT	1 cut(s)	19
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	127
PscI	ACATGT	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	272
RsaI	GTAC	3 cut(s)	60, 253, 309
RsaNI	GTAC	3 cut(s)	59, 252, 308
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	87, 186, 227
Sau3AI	GATC	1 cut(s)	73
ScaI	AGTACT	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	37, 143, 271, 346, 372, 382, 397, 427
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	360
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	205, 293
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	303
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	87, 186, 227
Tru9I	TTAA	3 cut(s)	87, 186, 227
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	93, 140, 159, 252
TspRI	CASTG	1 cut(s)	46
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.