No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g13290 |
| prunus_persica | Prupe.5G210900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0416771 RchiOBHm_Chr5g0036501 |
| rosa_laevigata | RLG00000005015 |
| rosa_roxburghii | Rroxscaffold_3G00270120 Rroxscaffold_3G00273890 Rroxscaffold_7G00189790 |
| rosa_rugosa | Rorug06G0459000 Rorug06G0461200 |
| rosa_samantha | Rh6DG319700 Rh7AG062000 Rh7BG062200 Rh7CG063600 Rh7DG061800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 228 |
| AccB1I | GGYRCC | 1 cut(s) | 65 |
| AciI | CCGC | 1 cut(s) | 383 |
| AfaI | GTAC | 3 cut(s) | 12, 205, 261 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 20, 62 |
| AgsI | TTSAA | 2 cut(s) | 105, 352 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 224 |
| AspLEI | GCGC | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 3 cut(s) | 35, 334, 371 |
| BaeGI | GKGCMC | 1 cut(s) | 68 |
| BanI | GGYRCC | 1 cut(s) | 65 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 196, 228 |
| BceAI | ACGGC | 1 cut(s) | 294 |
| BciVI | GTATCC | 1 cut(s) | 167 |
| BclI | TGATCA | 1 cut(s) | 25 |
| BfuI | GTATCC | 1 cut(s) | 167 |
| BmcAI | AGTACT | 1 cut(s) | 205 |
| BmiI | GGNNCC | 1 cut(s) | 67 |
| BmsI | GCATC | 1 cut(s) | 238 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 20, 62 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse1I | ACTGG | 1 cut(s) | 44 |
| BseGI | GGATG | 2 cut(s) | 229, 295 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 20, 62 |
| BseNI | ACTGG | 1 cut(s) | 44 |
| BseSI | GKGCMC | 1 cut(s) | 68 |
| BshNI | GGYRCC | 1 cut(s) | 65 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 20, 62 |
| BsmI | GAATGC | 1 cut(s) | 358 |
| Bsp1286I | GDGCHC | 1 cut(s) | 68 |
| Bsp143I | GATC | 1 cut(s) | 25 |
| BspACI | CCGC | 1 cut(s) | 383 |
| BspHI | TCATGA | 1 cut(s) | 28 |
| BspLI | GGNNCC | 1 cut(s) | 67 |
| BspT107I | GGYRCC | 1 cut(s) | 65 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrI | ACTGG | 1 cut(s) | 44 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssMI | GATC | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 2 cut(s) | 157, 245 |
| BstC8I | GCNNGC | 1 cut(s) | 334 |
| BstF5I | GGATG | 2 cut(s) | 229, 295 |
| BstHHI | GCGC | 1 cut(s) | 229 |
| BstKTI | GATC | 1 cut(s) | 28 |
| BstMBI | GATC | 1 cut(s) | 25 |
| BstSLI | GKGCMC | 1 cut(s) | 68 |
| BsuI | GTATCC | 1 cut(s) | 167 |
| BtsCI | GGATG | 2 cut(s) | 229, 295 |
| Cac8I | GCNNGC | 1 cut(s) | 334 |
| CaiI | CAGNNNCTG | 1 cut(s) | 224 |
| CciI | TCATGA | 1 cut(s) | 28 |
| CfoI | GCGC | 1 cut(s) | 229 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Csp6I | GTAC | 3 cut(s) | 11, 204, 260 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 255, 290 |
| CviAII | CATG | 2 cut(s) | 29, 365 |
| CviJI | RGCY | 1 cut(s) | 17 |
| CviKI_1 | RGCY | 1 cut(s) | 17 |
| CviQI | GTAC | 3 cut(s) | 11, 204, 260 |
| DpnI | GATC | 1 cut(s) | 27 |
| DpnII | GATC | 1 cut(s) | 25 |
| DraI | TTTAAA | 1 cut(s) | 139 |
| FaeI | CATG | 2 cut(s) | 32, 368 |
| FaiI | YATR | 4 cut(s) | 30, 303, 344, 366 |
| FatI | CATG | 2 cut(s) | 28, 364 |
| FauI | CCCGC | 1 cut(s) | 390 |
| FbaI | TGATCA | 1 cut(s) | 25 |
| FokI | GGATG | 2 cut(s) | 216, 282 |
| FspI | TGCGCA | 1 cut(s) | 228 |
| GlaI | GCGC | 1 cut(s) | 228 |
| HapII | CCGG | 1 cut(s) | 14 |
| HhaI | GCGC | 1 cut(s) | 229 |
| Hin1II | CATG | 2 cut(s) | 32, 368 |
| Hin6I | GCGC | 1 cut(s) | 227 |
| HinP1I | GCGC | 1 cut(s) | 227 |
| HinfI | GANTC | 2 cut(s) | 73, 79 |
| HpaII | CCGG | 1 cut(s) | 14 |
| HphI | GGTGA | 3 cut(s) | 35, 334, 371 |
| Hpy188I | TCNGA | 1 cut(s) | 78 |
| Hpy188III | TCNNGA | 1 cut(s) | 29 |
| Hpy99I | CGWCG | 1 cut(s) | 315 |
| HpyAV | CCTTC | 1 cut(s) | 313 |
| HpyCH4III | ACNGT | 2 cut(s) | 157, 245 |
| Hsp92II | CATG | 2 cut(s) | 32, 368 |
| HspAI | GCGC | 1 cut(s) | 227 |
| Ksp22I | TGATCA | 1 cut(s) | 25 |
| Kzo9I | GATC | 1 cut(s) | 25 |
| LweI | GCATC | 1 cut(s) | 238 |
| MalI | GATC | 1 cut(s) | 27 |
| MboI | GATC | 1 cut(s) | 25 |
| MboII | GAAGA | 2 cut(s) | 139, 186 |
| MhlI | GDGCHC | 1 cut(s) | 68 |
| MluCI | AATT | 1 cut(s) | 327 |
| MnlI | CCTC | 6 cut(s) | 117, 157, 179, 284, 309, 387 |
| MseI | TTAA | 3 cut(s) | 39, 138, 179 |
| MspI | CCGG | 1 cut(s) | 14 |
| Mva1269I | GAATGC | 1 cut(s) | 358 |
| NdeII | GATC | 1 cut(s) | 25 |
| NlaIII | CATG | 2 cut(s) | 32, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 67 |
| NsbI | TGCGCA | 1 cut(s) | 228 |
| PagI | TCATGA | 1 cut(s) | 28 |
| PctI | GAATGC | 1 cut(s) | 358 |
| PfeI | GAWTC | 2 cut(s) | 73, 79 |
| PspN4I | GGNNCC | 1 cut(s) | 67 |
| PstNI | CAGNNNCTG | 1 cut(s) | 224 |
| RsaI | GTAC | 3 cut(s) | 12, 205, 261 |
| RsaNI | GTAC | 3 cut(s) | 11, 204, 260 |
| SaqAI | TTAA | 3 cut(s) | 39, 138, 179 |
| Sau3AI | GATC | 1 cut(s) | 25 |
| ScaI | AGTACT | 1 cut(s) | 205 |
| SduI | GDGCHC | 1 cut(s) | 68 |
| SetI | ASST | 5 cut(s) | 95, 223, 324, 349, 379 |
| SfaNI | GCATC | 1 cut(s) | 238 |
| Sse9I | AATT | 1 cut(s) | 327 |
| SsiI | CCGC | 1 cut(s) | 383 |
| TaaI | ACNGT | 2 cut(s) | 157, 245 |
| TasI | AATT | 1 cut(s) | 327 |
| TatI | WGTACW | 1 cut(s) | 203 |
| TfiI | GAWTC | 2 cut(s) | 73, 79 |
| Tru1I | TTAA | 3 cut(s) | 39, 138, 179 |
| Tru9I | TTAA | 3 cut(s) | 39, 138, 179 |
| TspDTI | ATGAA | 2 cut(s) | 45, 204 |
| ZrmI | AGTACT | 1 cut(s) | 205 |