Rh7CG063600

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016337
Physical Location & Seq
Reverse (-)
4613328 .. 4618238
4911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG063600.1

Sequence Viewer

Length: 879 bp
ATGACGGTTATACACCACACTTTGAGGGAAGTTGATGGTACATTTTGTGATGCTAACTATAGCTGGAGTAGAGGTCATCTTCTGAACATATCTCATTTGCTTTTCAGTAAGAATAATGACGATGATGATTCTTTGAGACGAAGCATGGACTATTGTACCTGCATTCATTTATATGCATCATATCTCGAAGAACGCCTGGACTGTTTTCGTGTCCTGAAGTACGATGTTCAGAAAGATCACTTGTGTAACATGATGACATTTAGAATAAAAGATCTCACATGTTCAATACAATCTCTACAGAGAACCAAGGAACTTGAAACCCCAGACTTACTAAGGCATCTTCCTGCTTTGCAACAGCTTCTTTCTCGCCTTCTTGATTGCCAGCCACAACTGGGAACTGTATGTAATAGCTTGATTCAGTATGCTATTTCAATGGTTGCAGGTAAAATTGCTAACTTGTATGTTGCAATTATAGATGATATGAGTGAAGTACCAGCTTCTGGTGATCATGAAACTATTAAACCAGTAGTTGTGCCAAGAATGGGCCCCCTGAATCTGAATCAACAGGAAACCTATGAAGTTTCAAACAGGAGATTTCTTGGGAGGAAGATGATGTTTAAAAGGATTTTGGGAATGGTAAAAGAGGAAGCAGGATACTTAAATGGAGGACAATCTTCCAAGAGTACTGCTACTTCATCAGGTTCTGCGCATCCTGTCAAAAACAGTATCAATATCAATGTACGACCACAAAGATTGAGAAACATTAGTAGAGGACGTCCTCATACTCATCGTCGTGTGAAGGTGAAAATAGCTGGTAACTTTATACCTTTGAATGCTGATTATCATGTTCCGAGACCTCACCCGCCCAAGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

292

Amino Acids

33.31

Weight (kDa)

9.26

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 3 - 163 1.7e-18 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 778
Acc16I TGCGCA 1 cut(s) 708
Acc36I ACCTGC 2 cut(s) 167, 431
AccB7I CCANNNNNTGG 1 cut(s) 500
AciI CCGC 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 775
AfaI GTAC 6 cut(s) 40, 157, 221, 492, 685, 741
AfiI CCNNNNNNNGG 3 cut(s) 392, 500, 542
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 5 cut(s) 285, 317, 432, 585, 832
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 5 cut(s) 63, 358, 411, 497, 812
AluI AGCT 5 cut(s) 63, 358, 411, 497, 812
Alw26I GTCTC 2 cut(s) 130, 847
AlwNI CAGNNNCTG 2 cut(s) 500, 704
AoxI GGCC 1 cut(s) 544
ApaI GGGCCC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 2 cut(s) 544, 545
AsuHPI GGTGA 3 cut(s) 515, 814, 851
BaeGI GKGCMC 1 cut(s) 548
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BanII GRGCYC 1 cut(s) 548
BarI GAAGNNNNNNTAC 2 cut(s) 676, 708
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 647
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 130, 847
BfmI CTRYAG 2 cut(s) 58, 296
BfuAI ACCTGC 2 cut(s) 167, 431
BfuI GTATCC 1 cut(s) 647
BglII AGATCT 1 cut(s) 271
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 544, 545
BmiI GGNNCC 2 cut(s) 546, 547
BmrFI CCNGG 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 4 cut(s) 40, 185, 346, 718
BmuI ACTGGG 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 775
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 500, 542
Bse1I ACTGG 2 cut(s) 396, 524
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 3 cut(s) 392, 500, 542
BseNI ACTGG 2 cut(s) 396, 524
BseSI GKGCMC 1 cut(s) 548
BshFI GGCC 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 392, 500, 542
BsmAI GTCTC 2 cut(s) 130, 847
BsmBI CGTCTC 1 cut(s) 130
BsmI GAATGC 2 cut(s) 162, 838
BsnI GGCC 1 cut(s) 546
Bso31I GGTCTC 1 cut(s) 847
Bsp120I GGGCCC 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 3 cut(s) 235, 271, 505
BspACI CCGC 1 cut(s) 863
BspANI GGCC 1 cut(s) 546
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 546, 547
BspMI ACCTGC 2 cut(s) 167, 431
BspTNI GGTCTC 1 cut(s) 847
BsrI ACTGG 2 cut(s) 396, 524
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 3 cut(s) 235, 271, 505
BssNI GRCGYC 1 cut(s) 775
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 4 cut(s) 7, 203, 400, 725
BstACI GRCGYC 1 cut(s) 775
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 709
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 3 cut(s) 238, 274, 508
BstMAI GTCTC 2 cut(s) 130, 847
BstMBI GATC 3 cut(s) 235, 271, 505
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 2 cut(s) 58, 296
BstSLI GKGCMC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 1 cut(s) 546
BtsCI GGATG 1 cut(s) 709
BveI ACCTGC 2 cut(s) 167, 431
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 2 cut(s) 500, 704
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 2 cut(s) 544, 545
Csp6I GTAC 6 cut(s) 39, 156, 220, 491, 684, 740
CspCI CAANNNNNGTGG 2 cut(s) 735, 770
CviAII CATG 5 cut(s) 145, 250, 279, 509, 845
CviJI RGCY 7 cut(s) 63, 358, 385, 411, 497, 546, 812
CviKI_1 RGCY 7 cut(s) 63, 358, 385, 411, 497, 546, 812
CviQI GTAC 6 cut(s) 39, 156, 220, 491, 684, 740
DdeI CTNAG 1 cut(s) 332
DpnI GATC 3 cut(s) 237, 273, 507
DpnII GATC 3 cut(s) 235, 271, 505
DraI TTTAAA 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 548
Eco31I GGTCTC 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 5 cut(s) 148, 253, 282, 512, 848
FatI CATG 5 cut(s) 144, 249, 278, 508, 844
FauI CCCGC 1 cut(s) 870
FbaI TGATCA 1 cut(s) 505
FokI GGATG 1 cut(s) 696
FriOI GRGCYC 1 cut(s) 548
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 1 cut(s) 546
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 1 cut(s) 775
Hin1II CATG 5 cut(s) 148, 253, 282, 512, 848
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 4 cut(s) 128, 415, 553, 559
HphI GGTGA 3 cut(s) 515, 814, 851
Hpy188I TCNGA 4 cut(s) 84, 231, 558, 852
Hpy188III TCNNGA 4 cut(s) 185, 214, 374, 509
Hpy99I CGWCG 1 cut(s) 795
HpyAV CCTTC 2 cut(s) 380, 793
HpyCH4III ACNGT 4 cut(s) 7, 203, 400, 725
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 5 cut(s) 162, 176, 352, 440, 467
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 775
Hsp92I GRCGYC 1 cut(s) 775
Hsp92II CATG 5 cut(s) 148, 253, 282, 512, 848
HspAI GCGC 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 3 cut(s) 235, 271, 505
LweI GCATC 4 cut(s) 40, 185, 346, 718
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 2 cut(s) 245, 815
MalI GATC 3 cut(s) 237, 273, 507
MboI GATC 3 cut(s) 235, 271, 505
MboII GAAGA 5 cut(s) 71, 200, 332, 619, 666
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 548
MluCI AATT 2 cut(s) 447, 468
MnlI CCTC 8 cut(s) 18, 65, 597, 637, 659, 764, 789, 867
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 3 cut(s) 519, 618, 659
MslI CAYNNNNRTG 2 cut(s) 171, 792
MspR9I CCNGG 1 cut(s) 197
Mva1269I GAATGC 2 cut(s) 162, 838
MvaI CCWGG 1 cut(s) 197
NdeII GATC 3 cut(s) 235, 271, 505
NlaIII CATG 5 cut(s) 148, 253, 282, 512, 848
NlaIV GGNNCC 2 cut(s) 546, 547
NsbI TGCGCA 1 cut(s) 708
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 282
PagI TCATGA 1 cut(s) 508
PciI ACATGT 1 cut(s) 278
PctI GAATGC 2 cut(s) 162, 838
PfeI GAWTC 4 cut(s) 128, 415, 553, 559
PflMI CCANNNNNTGG 1 cut(s) 500
PscI ACATGT 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 546, 547
PspOMI GGGCCC 1 cut(s) 544
PspPI GGNCC 2 cut(s) 544, 545
PstNI CAGNNNCTG 2 cut(s) 500, 704
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 6 cut(s) 40, 157, 221, 492, 685, 741
RsaNI GTAC 6 cut(s) 39, 156, 220, 491, 684, 740
RseI CAYNNNNRTG 2 cut(s) 171, 792
SaqAI TTAA 3 cut(s) 519, 618, 659
Sau3AI GATC 3 cut(s) 235, 271, 505
Sau96I GGNCC 2 cut(s) 544, 545
ScaI AGTACT 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 548
SfaNI GCATC 4 cut(s) 40, 185, 346, 718
SfcI CTRYAG 2 cut(s) 58, 296
SmiMI CAYNNNNRTG 2 cut(s) 171, 792
Sse9I AATT 2 cut(s) 447, 468
SsiI CCGC 1 cut(s) 863
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 7, 203, 400, 725
TaiI ACGT 1 cut(s) 778
TaqI TCGA 1 cut(s) 186
TasI AATT 2 cut(s) 447, 468
TatI WGTACW 1 cut(s) 683
TfiI GAWTC 4 cut(s) 128, 415, 553, 559
Tru1I TTAA 3 cut(s) 519, 618, 659
Tru9I TTAA 3 cut(s) 519, 618, 659
TspDTI ATGAA 4 cut(s) 155, 525, 591, 684
Van91I CCANNNNNTGG 1 cut(s) 500
XceI RCATGY 1 cut(s) 282
ZraI GACGTC 1 cut(s) 776
ZrmI AGTACT 1 cut(s) 685
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.