Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015951

Physical Location & Seq

Genomic Coordinates Forward (+)

64733949 .. 64737164

Gene Structure 3216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3216 bp

ATGACCGGAACGGTGTCGTTTCAGCAAACCCCCCCACACTCTCACTCCCAATCCCAACCCCAACCCCAGCAGCCACAGCCACAGCCACAACCAGAACCACCGCAACCGCAACAGCCACCTCAGCCGCAGAGGGTGAACAGGAAGCTCGTCGTGGAAGTGGTGGACGCACGTAACCTTTTACCTAAAGATGGCCAGGGGAGCTCCAGCGCCTACGTGGTGGCGGACTTCGACGGCCAGCGGAAGCGGACGGCCACCAAATATAAGGACCTCAACCCCGTCTGGAACGAGCCGCTCGAGTTCGTCATCTCCGACCCGGACAACATGGACTACGAGGAGCTGGAGATCGAGGTCCTCAACGACAAGCGCTACGGCAACAGCGGCACGGCGCGTAAGAACCACTTCCTCGGCCGGGTGAAGCTCTACGGCACTCAGTTCGCCAAGCGCGGCGACGAGGGTTTGGTGTATTTCCAGCTCGAGAAGAAGAGCGTGTTCAGTTGGATTAGAGGCGAAATCGGGCTCAGAATTTGTTACTACGACGAGTTAGTGGACGAGGCGCCGCCGCAGCAGCAGCAACAACCGCCGCTGGAGGATCCCCCGCCTGAGAGGCCGAGGTCTCCGGCGGTTGTGGTGGTCGAGGAAGGGAGGGTGTTTGAGGTCCCTGGAGGACACGTTGAGACTACTGCATTTCATGAAAGCTCGTACTCGCCTCCGGTTGTGGTCACCGAGCAATCGCATCCGCAGATGGTTCATATGCACGGTCATCCGCCGCCGGGTCAGGAAATGCACGGTCACGGTCATCCGCCGCCCGGTCAGGAAATGCACGGTCATCCGCCGCCGGAGGTTCATTTTCAGCAGGAGGTGAGGAAAATGGAGACTCACAGGGTTGCTCCGATGGGCGAGAGAGTGAGAATTCCGAGGAGGCCTAACGTCGACTTCTCTCCGAAAGTGATTCCTGGAAAGTTCGCGGCGGAGACGACGGCGGAGAGAATTCATCCCTGTGAGCTGGTCGAGCCTATGCAGTACTTGTTCATCAGAATCGTCAAGGCCCGTGGACTCGCGCAGAACGAGAGCCCTTACGTCAAGGTCCGTACAAATAGTAGCCACCTCGTGAAGTCGAAAATGGCGGTTCACCGGCCGGGCGAGCCGACGGACTCGCCGGAGTGGAACCAGGTCTTCGCACTCGCTCACAACCGCCCTGACTCGGTGAGTTCCACATTGGAGATCTCCGTTCGCGACTCGCCGTCGGAGCAATTCTTAGGGGGCGTATGCTTCGACCTCTCCGACGTGCCGGTCCGAGACCCGCCGGACAGTCCCCTGGCTCCGCAGTGGTACAGACTAGAAGGAGGAGCCGGAGATCCAAACTCCGGTAGAGTATCCGGCGATATCCAGCTCTCTGTTTGGATAGGAACACAAGCCGACGACGCGTTCCCTGAAGCATGGAGCTCCGATGCACCGTACGTTTCCCACACGCGCTCCAAGGTGTACCAGTCCCCGAAGCTCTGGTATCTGAGAATGACGGTTATGGAGGTTCAGGACCTCCACATTGCATCGAATCTACCTCCGTTAACGGCTCCGGAAATCCGAGTCAAAGCTCAGCTCGGGTCTCAGTCGGCTCGAACCCGGCGCGGGTCCATGAACAACCACTGTGCCTCGTTTCACTGGAATGAGGACCTCATCTTCGTCGCGAGTGAGCCTCTGGAAGACTCGCTGATCCTGCTCGTGGAGGACCGCACCAACAAGGATCCAGTGCTCCTCGGCCACGTCGTAATTCCGGTGAACTCCATCGAGCAGCGAATCGACGAGCGCTACGTGGCGTCGAAATGGTTGCCGCTGGAAGGCAGCGGAGGCGGGCCCTACTGCGGCAGAATGCACCTCCGCCTTTGCTTGGAGGGTGGGTATCACGTGCTGGACGAAGCGGCGCACGTGTGCAGCGACTTTCGGCCCACGGCTAAGCAGCTGTGGAAGCCGGCTGTAGGCATTTTGGAGCTGGGGATTCTTGGCGCGCGAGGCTTGCTTCCGATGAAAGCTAAATCCGGTGGGAAAGGCTCCACGGACGCTTACTGTGTGGCCAAGTATGGTAAAAAATGGGTCAGGACCCGGACCGTTACGGATAGCTTCGACCCGCGCTGGAACGAACAGTACACGTGGCAAGTATATGACCCCTGCACCGTCCTCACCGTTGCTGTGTTTGACAACTGGCACATGCTTGCTGATGTCACAGAGGAAAAGCAGGATTTCCGTATAGGGAAAATACGAATACGCATCTCCACGCTGGAGAGCAACAGGGTGTACAAGAACTCGTACCCGTTGTTGGTTTTGTCCCGGACCGGGTTAAAGAAAATGGGCGAGATAGAGCTGGCGGTCCGGTTCGCCTGCCCATCCTTGCTACCCGAGACGTGCGCGGTTTACGGGCAACCATTGCTGCCCAGAATGCACTACCTCCGCCCTCTCGGGGTGGCTCAGCAGGAGGCGCTGAGAGGGGCCGCTACGCGCATGGTGGCCGCGTGGCTTGCACGCTCTGAGCCGCCTCTGGGGCCAGAGGTGGTGCGATACATGTTGGACGCGGACTCGCACACGTGGAGCATGAGGAAGAGTAAAGCGAATTGGTTTCGGATCGTGGCAGTGCTGGCGTGGTTGGTCGGGTTGGCGAAGTGGTTGGATGATATACGGAGGTGGAGGAACCCGGTGACGACGGTTTTGGTGCACGTGTTGTATTTGGTTCTAGTTTGGTACCCGGATTTGATAGTCCCGACTGGGTTTTTATATGTGTTTCTAATTGGGGTTTGGTACTACCGGTTCAGGCCCAAGATACCAGCTGGAATGGACCTCCGGCTCTCCCAGGCGGATACAGTCGACCTGGATGAACTTGATGAGGAGTTCGATACTTTTCCGAGCTCGAAATCTCCTGATGTGATTCGAGCCCGGTATGACCGGTTAAGAATGCTGGCGGCCCGGGTCCAAACTGTTTTGGGCGACTTTGCGGCCCAAGGAGAGCGGGCCCAAGCCCTTGTGAGCTGGAGGGACCCACGGGCTACAAAGTTGTTCATAGGAGTGTGCTTGCTTATCACTGTGGTGCTATATGTTGTGCCACCCAAAATGGTTGCGGTGGCATTGGGGTTTTACTACCTGCGCCACCCGATGTTTAGAGACCCAATGCCGCCGGCGAGCCTCAACTTTTTCCGGAGGCTTCCAAGCCTGTCGGACCGGTTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1071

Amino Acids

121.13

Weight (kDa)

7.42

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	48 - 141	8.8e-18	C2 domain
C2	PF00168	341 - 446	4.1e-08	C2 domain
C2	PF00168	501 - 611	4.7e-07	C2 domain
C2	PF00168	659 - 770	7.9e-19	C2 domain
PRT_C	PF08372	916 - 1071	1e-71	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74720
fragaria_vesca	FvH4_5g15460
malus_domestica	MD06G1188400.v1.1
prunus_persica	Prupe.5G186600_v2.0.a1
pyrus_communis	pycom06g16700
rosa_chinensis	RchiOBHm_Chr7g0180621
rosa_laevigata	RLG00000005249
rosa_multiflora	Rmu_co8415707.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272730
rosa_rugosa	Rorug06G0434600
rosa_samantha	Rh7AG035700 Rh7BG035600 Rh7CG037300 Rh7DG035900
rosa_wichuraiana	Rw7G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1289
Acc36I	ACCTGC	1 cut(s)	3135
Acc65I	GGTACC	1 cut(s)	2730
AccB1I	GGYRCC	2 cut(s)	553, 2730
AccBSI	CCGCTC	2 cut(s)	292, 2995
AccI	GTMKAC	2 cut(s)	930, 2853
AccIII	TCCGGA	2 cut(s)	1573, 3180
AclWI	GGATC	7 cut(s)	584, 597, 1349, 1705, 1736, 1749, 2621
AcoI	YGGCCR	8 cut(s)	190, 232, 249, 406, 1133, 1756, 2067, 2499
AcsI	RAATTY	3 cut(s)	522, 909, 987
AcuI	CTGAAG	1 cut(s)	1452
AcvI	CACGTG	5 cut(s)	1903, 1924, 2145, 2577, 2707
AcyI	GRCGYC	2 cut(s)	554, 1814
AdeI	CACNNNGTG	1 cut(s)	1108
AfeI	AGCGCT	2 cut(s)	365, 1805
AflIII	ACRYGT	7 cut(s)	667, 1422, 1923, 2142, 2553, 2574, 2706
AgeI	ACCGGT	3 cut(s)	2793, 2931, 3204
AhdI	GACNNNNNGTC	1 cut(s)	1240
AjiI	CACGTC	3 cut(s)	1285, 1762, 2397
AjnI	CCWGG	7 cut(s)	192, 658, 952, 1167, 1314, 2838, 2856
AleI	CACNNNNGTG	1 cut(s)	3071
Alw21I	GWGCWC	5 cut(s)	203, 1445, 1752, 2706, 2897
Alw26I	GTCTC	8 cut(s)	618, 668, 866, 965, 1290, 1608, 2387, 3141
Alw44I	GTGCAC	1 cut(s)	2702
AlwI	GGATC	7 cut(s)	584, 597, 1349, 1705, 1736, 1749, 2621
Ama87I	CYCGRG	6 cut(s)	293, 473, 1598, 2390, 2450, 2952
Aor13HI	TCCGGA	2 cut(s)	1573, 3180
Aor51HI	AGCGCT	2 cut(s)	365, 1805
ApaI	GGGCCC	2 cut(s)	1854, 3001
ApaLI	GTGCAC	1 cut(s)	2702
ApeKI	GCWGC	9 cut(s)	70, 562, 565, 568, 1789, 1839, 1929, 1954, 2422
ApoI	RAATTY	3 cut(s)	522, 909, 987
ArsI	GACNNNNNNTTYG	4 cut(s)	1661, 1693, 2680, 2712
AsiGI	ACCGGT	3 cut(s)	2793, 2931, 3204
Asp700I	GAANNNNTTC	1 cut(s)	398
Asp718I	GGTACC	1 cut(s)	2730
AsuHPI	GGTGA	9 cut(s)	145, 424, 712, 871, 1121, 1216, 1786, 2167, 2698
AvaI	CYCGRG	6 cut(s)	293, 473, 1598, 2390, 2450, 2952
BaeGI	GKGCMC	3 cut(s)	1854, 2706, 3001
BalI	TGGCCA	2 cut(s)	192, 2069
BamHI	GGATCC	2 cut(s)	589, 1741
BanI	GGYRCC	2 cut(s)	553, 2730
BanII	GRGCYC	8 cut(s)	203, 519, 1073, 1445, 1854, 2897, 2923, 3001
BauI	CACGAG	2 cut(s)	1106, 1718
BbrPI	CACGTG	5 cut(s)	1903, 1924, 2145, 2577, 2707
BbsI	GAAGAC	2 cut(s)	1165, 1707
Bbv12I	GWGCWC	5 cut(s)	203, 1445, 1752, 2706, 2897
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	9 cut(s)	82, 574, 577, 580, 1801, 1851, 1941, 1966, 2409
BccI	CCATC	5 cut(s)	182, 736, 886, 1790, 2386
BceAI	ACGGC	9 cut(s)	247, 264, 385, 399, 439, 993, 1225, 1584, 1962
BcgI	CGANNNNNNTGC	4 cut(s)	415, 449, 1807, 1841
BciT130I	CCWGG	7 cut(s)	194, 660, 954, 1169, 1316, 2840, 2858
BciVI	GTATCC	2 cut(s)	1384, 2839
BcoDI	GTCTC	8 cut(s)	618, 668, 866, 965, 1290, 1608, 2387, 3141
BfaI	CTAG	2 cut(s)	1337, 2723
BfmI	CTRYAG	1 cut(s)	1971
BfoI	RGCGCY	5 cut(s)	210, 367, 557, 1807, 2474
BfuAI	ACCTGC	1 cut(s)	3135
BfuI	GTATCC	2 cut(s)	1384, 2839
BglI	GCCNNNNNGGC	2 cut(s)	604, 2533
BglII	AGATCT	1 cut(s)	1221
BlpI	GCTNAGC	3 cut(s)	1593, 1950, 2460
BmcAI	AGTACT	1 cut(s)	1022
BmeRI	GACNNNNNGTC	1 cut(s)	1240
BmeT110I	CYCGRG	6 cut(s)	293, 473, 1598, 2390, 2450, 2952
BmgBI	CACGTC	3 cut(s)	1285, 1762, 2397
BmrI	ACTGGG	1 cut(s)	2763
BmsI	GCATC	4 cut(s)	742, 1438, 1556, 2271
BmuI	ACTGGG	1 cut(s)	2763
BpiI	GAAGAC	2 cut(s)	1165, 1707
BplI	GAGNNNNNCTC	2 cut(s)	1678, 1710
BpmI	CTGGAG	6 cut(s)	187, 359, 605, 681, 2294, 3037
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu1102I	GCTNAGC	3 cut(s)	1593, 1950, 2460
BsaAI	YACGTR	8 cut(s)	170, 214, 1810, 1903, 1924, 2145, 2577, 2707
BsaHI	GRCGYC	2 cut(s)	554, 1814
BsaI	GGTCTC	4 cut(s)	618, 1290, 1608, 3141
BsaXI	ACNNNNNCTCC	8 cut(s)	29, 59, 654, 684, 1457, 1487, 1880, 1910
Bse118I	RCCGGY	7 cut(s)	1131, 1288, 1966, 2793, 2931, 3160, 3204
Bse1I	ACTGG	5 cut(s)	1486, 1664, 1745, 2201, 2758
Bse3DI	GCAATG	2 cut(s)	1542, 2417
BseAI	TCCGGA	2 cut(s)	1573, 3180
BseBI	CCWGG	7 cut(s)	194, 660, 954, 1169, 1316, 2840, 2858
BseGI	GGATG	8 cut(s)	733, 760, 796, 826, 991, 2378, 2665, 2866
BseMI	GCAATG	2 cut(s)	1542, 2417
BseNI	ACTGG	5 cut(s)	1486, 1664, 1745, 2201, 2758
BsePI	GCGCGC	1 cut(s)	2001
BseRI	GAGGAG	5 cut(s)	347, 931, 1359, 1742, 2888
BseSI	GKGCMC	3 cut(s)	1854, 2706, 3001
BseX3I	CGGCCG	2 cut(s)	406, 1133
BseXI	GCAGC	9 cut(s)	82, 574, 577, 580, 1801, 1851, 1941, 1966, 2409
BseYI	CCCAGC	2 cut(s)	66, 1987
BsgI	GTGCAG	2 cut(s)	1948, 2149
Bsh1285I	CGRYCG	2 cut(s)	409, 1136
BshNI	GGYRCC	2 cut(s)	553, 2730
BshTI	ACCGGT	3 cut(s)	2793, 2931, 3204
BsiEI	CGRYCG	2 cut(s)	409, 1136
BsiHKAI	GWGCWC	5 cut(s)	203, 1445, 1752, 2706, 2897
BsiHKCI	CYCGRG	6 cut(s)	293, 473, 1598, 2390, 2450, 2952
BsiWI	CGTACG	1 cut(s)	1455
BslFI	GGGAC	6 cut(s)	641, 1296, 1474, 2305, 2732, 3035
BsmAI	GTCTC	8 cut(s)	618, 668, 866, 965, 1290, 1608, 2387, 3141
BsmBI	CGTCTC	2 cut(s)	965, 2387
BsmFI	GGGAC	6 cut(s)	641, 1296, 1474, 2305, 2732, 3035
BsmI	GAATGC	3 cut(s)	1872, 2436, 2946
Bso31I	GGTCTC	4 cut(s)	618, 1290, 1608, 3141
BsoBI	CYCGRG	6 cut(s)	293, 473, 1598, 2390, 2450, 2952
Bsp120I	GGGCCC	2 cut(s)	1850, 2997
Bsp13I	TCCGGA	2 cut(s)	1573, 3180
Bsp1407I	TGTACA	1 cut(s)	2289
Bsp143I	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
Bsp1720I	GCTNAGC	3 cut(s)	1593, 1950, 2460
Bsp68I	TCGCGA	2 cut(s)	1233, 1685
BspEI	TCCGGA	2 cut(s)	1573, 3180
BspHI	TCATGA	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	3135
BspPI	GGATC	7 cut(s)	584, 597, 1349, 1705, 1736, 1749, 2621
BspQI	GCTCTTC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	553, 2730
BspTNI	GGTCTC	4 cut(s)	618, 1290, 1608, 3141
BsrBI	CCGCTC	2 cut(s)	292, 2995
BsrDI	GCAATG	2 cut(s)	1542, 2417
BsrFI	RCCGGY	7 cut(s)	1131, 1288, 1966, 2793, 2931, 3160, 3204
BsrGI	TGTACA	1 cut(s)	2289
BsrI	ACTGG	5 cut(s)	1486, 1664, 1745, 2201, 2758
BssAI	RCCGGY	7 cut(s)	1131, 1288, 1966, 2793, 2931, 3160, 3204
BssHII	GCGCGC	1 cut(s)	2001
BssMI	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
BssNI	GRCGYC	2 cut(s)	554, 1814
BssSI	CACGAG	2 cut(s)	1106, 1718
BssT1I	CCWWGG	2 cut(s)	1476, 2986
Bst2BI	CACGAG	2 cut(s)	1106, 1718
Bst2UI	CCWGG	7 cut(s)	194, 660, 954, 1169, 1316, 2840, 2858
Bst6I	CTCTTC	2 cut(s)	476, 2585
BstACI	GRCGYC	2 cut(s)	554, 1814
BstAPI	GCANNNNNTGC	1 cut(s)	2419
BstAUI	TGTACA	1 cut(s)	2289
BstBAI	YACGTR	8 cut(s)	170, 214, 1810, 1903, 1924, 2145, 2577, 2707
BstDSI	CCRYGG	4 cut(s)	1048, 1944, 2049, 3026
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	8 cut(s)	733, 760, 796, 826, 991, 2378, 2665, 2866
BstH2I	RGCGCY	5 cut(s)	210, 367, 557, 1807, 2474
BstKTI	GATC	7 cut(s)	345, 592, 1224, 1357, 1713, 1744, 2616
BstMAI	GTCTC	8 cut(s)	618, 668, 866, 965, 1290, 1608, 2387, 3141
BstMBI	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
BstMCI	CGRYCG	2 cut(s)	409, 1136
BstNI	CCWGG	7 cut(s)	194, 660, 954, 1169, 1316, 2840, 2858
BstNSI	RCATGY	2 cut(s)	2206, 2557
BstPI	GGTNACC	1 cut(s)	718
BstSFI	CTRYAG	1 cut(s)	1971
BstSLI	GKGCMC	3 cut(s)	1854, 2706, 3001
BstV1I	GCAGC	9 cut(s)	82, 574, 577, 580, 1801, 1851, 1941, 1966, 2409
BstV2I	GAAGAC	2 cut(s)	1165, 1707
BstX2I	RGATCY	4 cut(s)	589, 1221, 1354, 1741
BstYI	RGATCY	4 cut(s)	589, 1221, 1354, 1741
BstZI	CGGCCG	2 cut(s)	406, 1133
BsuI	GTATCC	2 cut(s)	1384, 2839
BtgI	CCRYGG	4 cut(s)	1048, 1944, 2049, 3026
BtrI	CACGTC	3 cut(s)	1285, 1762, 2397
BtsCI	GGATG	8 cut(s)	733, 760, 796, 826, 991, 2378, 2665, 2866
BtsI	GCAGTG	2 cut(s)	1331, 2628
BtsIMutI	CAGTG	6 cut(s)	1331, 1642, 1657, 1752, 2628, 3066
BtuMI	TCGCGA	2 cut(s)	1233, 1685
BveI	ACCTGC	1 cut(s)	3135
CciI	TCATGA	1 cut(s)	688
Cfr10I	RCCGGY	7 cut(s)	1131, 1288, 1966, 2793, 2931, 3160, 3204
Cfr9I	CCCGGG	1 cut(s)	2952
CpoI	CGGWCCG	5 cut(s)	1291, 2100, 2325, 2362, 3202
CseI	GACGC	5 cut(s)	173, 1430, 1803, 2063, 2570
CsiI	ACCWGGT	1 cut(s)	1167
CspAI	ACCGGT	3 cut(s)	2793, 2931, 3204
CspCI	CAANNNNNGTGG	2 cut(s)	1030, 1065
CspI	CGGWCCG	5 cut(s)	1291, 2100, 2325, 2362, 3202
CviAII	CATG	8 cut(s)	322, 689, 1437, 1633, 2203, 2494, 2554, 2584
DinI	GGCGCC	1 cut(s)	555
DpnI	GATC	7 cut(s)	344, 591, 1223, 1356, 1712, 1743, 2615
DpnII	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
DraIII	CACNNNGTG	1 cut(s)	1108
DrdI	GACNNNNNNGTC	1 cut(s)	1289
DriI	GACNNNNNGTC	1 cut(s)	1240
DseDI	GACNNNNNNGTC	1 cut(s)	1289
EaeI	YGGCCR	8 cut(s)	190, 232, 249, 406, 1133, 1756, 2067, 2499
EagI	CGGCCG	2 cut(s)	406, 1133
Eam1104I	CTCTTC	2 cut(s)	476, 2585
Eam1105I	GACNNNNNGTC	1 cut(s)	1240
EarI	CTCTTC	2 cut(s)	476, 2585
EciI	GGCGGA	9 cut(s)	236, 753, 789, 819, 983, 995, 1865, 2432, 2858
Ecl136II	GAGCTC	3 cut(s)	201, 1443, 2895
EclXI	CGGCCG	2 cut(s)	406, 1133
Eco130I	CCWWGG	2 cut(s)	1476, 2986
Eco147I	AGGCCT	1 cut(s)	922
Eco24I	GRGCYC	8 cut(s)	203, 519, 1073, 1445, 1854, 2897, 2923, 3001
Eco31I	GGTCTC	4 cut(s)	618, 1290, 1608, 3141
Eco32I	GATATC	1 cut(s)	1384
Eco47III	AGCGCT	2 cut(s)	365, 1805
Eco52I	CGGCCG	2 cut(s)	406, 1133
Eco53kI	GAGCTC	3 cut(s)	201, 1443, 2895
Eco57I	CTGAAG	1 cut(s)	1452
Eco72I	CACGTG	5 cut(s)	1903, 1924, 2145, 2577, 2707
Eco88I	CYCGRG	6 cut(s)	293, 473, 1598, 2390, 2450, 2952
Eco91I	GGTNACC	1 cut(s)	718
EcoICRI	GAGCTC	3 cut(s)	201, 1443, 2895
EcoO109I	RGGNCCY	8 cut(s)	265, 349, 655, 1534, 1669, 1851, 2094, 3022
EcoO65I	GGTNACC	1 cut(s)	718
EcoRI	GAATTC	2 cut(s)	909, 987
EcoRII	CCWGG	7 cut(s)	192, 658, 952, 1167, 1314, 2838, 2856
EcoRV	GATATC	1 cut(s)	1384
EcoT14I	CCWWGG	2 cut(s)	1476, 2986
EcoT38I	GRGCYC	8 cut(s)	203, 519, 1073, 1445, 1854, 2897, 2923, 3001
EgeI	GGCGCC	1 cut(s)	555
EheI	GGCGCC	1 cut(s)	555
ErhI	CCWWGG	2 cut(s)	1476, 2986
Esp3I	CGTCTC	2 cut(s)	965, 2387
FaeI	CATG	8 cut(s)	325, 692, 1440, 1636, 2206, 2497, 2557, 2587
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	6 cut(s)	641, 1296, 1474, 2305, 2732, 3035
FatI	CATG	8 cut(s)	321, 688, 1436, 1632, 2202, 2493, 2553, 2583
FauI	CCCGC	6 cut(s)	603, 1308, 1619, 1841, 2130, 2988
FauNDI	CATATG	1 cut(s)	750
FblI	GTMKAC	2 cut(s)	930, 2853
FokI	GGATG	8 cut(s)	720, 747, 783, 813, 978, 2365, 2672, 2873
FriOI	GRGCYC	8 cut(s)	203, 519, 1073, 1445, 1854, 2897, 2923, 3001
FspBI	CTAG	2 cut(s)	1337, 2723
GsaI	CCCAGC	2 cut(s)	70, 1991
GsuI	CTGGAG	6 cut(s)	187, 359, 605, 681, 2294, 3037
HaeII	RGCGCY	5 cut(s)	210, 367, 557, 1807, 2474
HgaI	GACGC	5 cut(s)	173, 1430, 1803, 2063, 2570
Hin1I	GRCGYC	2 cut(s)	554, 1814
Hin1II	CATG	8 cut(s)	325, 692, 1440, 1636, 2206, 2497, 2557, 2587
HincII	GTYRAC	3 cut(s)	931, 1566, 2854
HindII	GTYRAC	3 cut(s)	931, 1566, 2854
HpaI	GTTAAC	1 cut(s)	1566
HphI	GGTGA	9 cut(s)	145, 424, 712, 871, 1121, 1216, 1786, 2167, 2698
HpyAV	CCTTC	3 cut(s)	632, 1334, 1829
Hsp92I	GRCGYC	2 cut(s)	554, 1814
Hsp92II	CATG	8 cut(s)	325, 692, 1440, 1636, 2206, 2497, 2557, 2587
KasI	GGCGCC	1 cut(s)	553
KflI	GGGWCCC	1 cut(s)	3022
Kpn2I	TCCGGA	2 cut(s)	1573, 3180
KpnI	GGTACC	1 cut(s)	2734
KroI	GCCGGC	2 cut(s)	1966, 3160
KroNI	GCCGGC	2 cut(s)	1968, 3162
KspAI	GTTAAC	1 cut(s)	1566
Kzo9I	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
LguI	GCTCTTC	1 cut(s)	476
Lsp1109I	GCAGC	9 cut(s)	82, 574, 577, 580, 1801, 1851, 1941, 1966, 2409
LweI	GCATC	4 cut(s)	742, 1438, 1556, 2271
MabI	ACCWGGT	1 cut(s)	1167
MaeI	CTAG	2 cut(s)	1337, 2723
MaeIII	GTNAC	7 cut(s)	170, 527, 718, 788, 2104, 2215, 2686
MalI	GATC	7 cut(s)	344, 591, 1223, 1356, 1712, 1743, 2615
MbiI	CCGCTC	2 cut(s)	292, 2995
MboI	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
MboII	GAAGA	6 cut(s)	490, 493, 1165, 1669, 1712, 2602
MflI	RGATCY	4 cut(s)	589, 1221, 1354, 1741
MlsI	TGGCCA	2 cut(s)	192, 2069
MluCI	AATT	7 cut(s)	522, 909, 987, 1250, 1767, 2602, 2775
MluI	ACGCGT	1 cut(s)	1422
MluNI	TGGCCA	2 cut(s)	192, 2069
Mly113I	GGCGCC	1 cut(s)	554
MlyI	GAGTC	8 cut(s)	868, 1047, 1145, 1193, 1229, 1593, 1697, 2561
MmeI	TCCRAC	7 cut(s)	333, 476, 1224, 1305, 2538, 2637, 3180
Mox20I	TGGCCA	2 cut(s)	192, 2069
MreI	CGCCGGCG	1 cut(s)	3160
MroI	TCCGGA	2 cut(s)	1573, 3180
MroNI	GCCGGC	2 cut(s)	1966, 3160
MroXI	GAANNNNTTC	1 cut(s)	398
MscI	TGGCCA	2 cut(s)	192, 2069
MseI	TTAA	4 cut(s)	1565, 2333, 2936, 3209
MslI	CAYNNNNRTG	4 cut(s)	996, 1662, 3050, 3071
Msp20I	TGGCCA	2 cut(s)	192, 2069
MspA1I	CMGCKG	7 cut(s)	238, 378, 583, 1831, 1842, 1957, 2816
Mva1269I	GAATGC	3 cut(s)	1872, 2436, 2946
MvaI	CCWGG	7 cut(s)	194, 660, 954, 1169, 1316, 2840, 2858
NaeI	GCCGGC	2 cut(s)	1968, 3162
NarI	GGCGCC	1 cut(s)	554
NdeI	CATATG	1 cut(s)	750
NdeII	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
NgoMIV	GCCGGC	2 cut(s)	1966, 3160
NlaIII	CATG	8 cut(s)	325, 692, 1440, 1636, 2206, 2497, 2557, 2587
NmeAIII	GCCGAG	3 cut(s)	384, 633, 1734
NmuCI	GTSAC	4 cut(s)	718, 788, 2215, 2686
NruI	TCGCGA	2 cut(s)	1233, 1685
NspI	RCATGY	2 cut(s)	2206, 2557
OliI	CACNNNNGTG	1 cut(s)	3071
PaeR7I	CTCGAG	2 cut(s)	293, 473
PagI	TCATGA	1 cut(s)	688
PauI	GCGCGC	1 cut(s)	2001
PceI	AGGCCT	1 cut(s)	922
PciI	ACATGT	1 cut(s)	2553
PciSI	GCTCTTC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	8 cut(s)	291, 306, 1062, 1278, 1761, 1806, 1908, 1929
PctI	GAATGC	3 cut(s)	1872, 2436, 2946
PdiI	GCCGGC	2 cut(s)	1968, 3162
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	6 cut(s)	949, 1035, 1552, 1794, 1993, 2914
Pfl23II	CGTACG	1 cut(s)	1455
PfoI	TCCNGGA	2 cut(s)	952, 2321
PinAI	ACCGGT	3 cut(s)	2793, 2931, 3204
PleI	GAGTC	8 cut(s)	868, 1047, 1145, 1193, 1229, 1592, 1697, 2561
PluTI	GGCGCC	1 cut(s)	557
PmaCI	CACGTG	5 cut(s)	1903, 1924, 2145, 2577, 2707
PmlI	CACGTG	5 cut(s)	1903, 1924, 2145, 2577, 2707
PpsI	GAGTC	8 cut(s)	868, 1047, 1145, 1193, 1229, 1592, 1697, 2561
Ppu21I	YACGTR	8 cut(s)	170, 214, 1810, 1903, 1924, 2145, 2577, 2707
PpuMI	RGGWCCY	7 cut(s)	265, 349, 655, 1534, 1669, 2094, 3022
PscI	ACATGT	1 cut(s)	2553
Psp124BI	GAGCTC	3 cut(s)	203, 1445, 2897
Psp5II	RGGWCCY	7 cut(s)	265, 349, 655, 1534, 1669, 2094, 3022
Psp6I	CCWGG	7 cut(s)	192, 658, 952, 1167, 1314, 2838, 2856
PspCI	CACGTG	5 cut(s)	1903, 1924, 2145, 2577, 2707
PspEI	GGTNACC	1 cut(s)	718
PspFI	CCCAGC	2 cut(s)	66, 1987
PspGI	CCWGG	7 cut(s)	192, 658, 952, 1167, 1314, 2838, 2856
PspLI	CGTACG	1 cut(s)	1455
PspOMI	GGGCCC	2 cut(s)	1850, 2997
PspPPI	RGGWCCY	7 cut(s)	265, 349, 655, 1534, 1669, 2094, 3022
PspXI	VCTCGAGB	1 cut(s)	293
PsrI	GAACNNNNNNTAC	4 cut(s)	2123, 2155, 2780, 2812
PsuI	RGATCY	4 cut(s)	589, 1221, 1354, 1741
PteI	GCGCGC	1 cut(s)	2001
PvuII	CAGCTG	2 cut(s)	1957, 2816
RruI	TCGCGA	2 cut(s)	1233, 1685
RseI	CAYNNNNRTG	4 cut(s)	996, 1662, 3050, 3071
Rsr2I	CGGWCCG	5 cut(s)	1291, 2100, 2325, 2362, 3202
RsrII	CGGWCCG	5 cut(s)	1291, 2100, 2325, 2362, 3202
SacI	GAGCTC	3 cut(s)	203, 1445, 2897
SalI	GTCGAC	2 cut(s)	929, 2852
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	1565, 2333, 2936, 3209
Sau3AI	GATC	7 cut(s)	342, 589, 1221, 1354, 1710, 1741, 2613
ScaI	AGTACT	1 cut(s)	1022
SchI	GAGTC	8 cut(s)	868, 1047, 1145, 1193, 1229, 1593, 1697, 2561
SexAI	ACCWGGT	1 cut(s)	1167
SfaNI	GCATC	4 cut(s)	742, 1438, 1556, 2271
SfcI	CTRYAG	1 cut(s)	1971
SfoI	GGCGCC	1 cut(s)	555
Sfr274I	CTCGAG	2 cut(s)	293, 473
SgrAI	CRCCGGYG	1 cut(s)	3160
SlaI	CTCGAG	2 cut(s)	293, 473
SmaI	CCCGGG	1 cut(s)	2954
SmiMI	CAYNNNNRTG	4 cut(s)	996, 1662, 3050, 3071
SmlI	CTYRAG	2 cut(s)	293, 473
SmoI	CTYRAG	2 cut(s)	293, 473
Sse9I	AATT	7 cut(s)	522, 909, 987, 1250, 1767, 2602, 2775
SseBI	AGGCCT	1 cut(s)	922
SspDI	GGCGCC	1 cut(s)	553
SspMI	CTAG	2 cut(s)	1337, 2723
SstI	GAGCTC	3 cut(s)	203, 1445, 2897
StuI	AGGCCT	1 cut(s)	922
StyI	CCWWGG	2 cut(s)	1476, 2986
TasI	AATT	7 cut(s)	522, 909, 987, 1250, 1767, 2602, 2775
TatI	WGTACW	3 cut(s)	1020, 2139, 2289
TfiI	GAWTC	6 cut(s)	949, 1035, 1552, 1794, 1993, 2914
Tru1I	TTAA	4 cut(s)	1565, 2333, 2936, 3209
Tru9I	TTAA	4 cut(s)	1565, 2333, 2936, 3209
TscAI	CASTG	6 cut(s)	1331, 1649, 1664, 1752, 2628, 3073
TseFI	GTSAC	4 cut(s)	718, 788, 2215, 2686
TseI	GCWGC	9 cut(s)	70, 562, 565, 568, 1789, 1839, 1929, 1954, 2422
Tsp45I	GTSAC	4 cut(s)	718, 788, 2215, 2686
TspGWI	ACGGA	8 cut(s)	1076, 1163, 1216, 1551, 2066, 2123, 2228, 2683
TspMI	CCCGGG	1 cut(s)	2952
TspRI	CASTG	6 cut(s)	1331, 1649, 1664, 1752, 2628, 3073
VneI	GTGCAC	1 cut(s)	2702
XapI	RAATTY	3 cut(s)	522, 909, 987
XceI	RCATGY	2 cut(s)	2206, 2557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XhoI	CTCGAG	2 cut(s)	293, 473
XmaI	CCCGGG	1 cut(s)	2952
XmiI	GTMKAC	2 cut(s)	930, 2853
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	2 cut(s)	1337, 2723
ZrmI	AGTACT	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.