Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008723

Physical Location & Seq

Genomic Coordinates Reverse (-)

838329 .. 840901

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGATTTTCAGAACAGTTATCAGCCCGAATCAGGGAAAGTGGAACAGATTGTTTCCCAATTTCTTCTGAAAAGCTTGCATATTATTTTGGACTCTAGAAATGTGATGGATCCGATGATAATCGACATCATACTTGTTCATGCGGGGTCTAATTCTTCATCAGTTGACAATCTGTTTGGGAATTCGGGGGCTGGTCCATCTGTTGAAACAATCATTGAGAGGTGGGTTGTTCAGTATGAAACTCCTAGGGTTGTGGCTAATCAAACTGGTGACAGTTTAGCATACAAGAAGACATATAAGAAGTCAATTGTGTCTTCACTAAGAGATCCCTTCTCAAGGGCAGAGGAGGAAATGATGCAGGAGTTCAGTTTTGCTCCTGTAGAGGCCAATCCTGGCCGCCTTTCTTTGTCTGTGACTTATCGTAAAATGCTGTCTGATTTCAATCTTGAGCCTTCAACACCTATGCCACCAAAGATAATTACAGATTATGTTGGTAGTCCTGCTACTGACCCCTTGAGCGTCCACACAGCTGGACAAGCGGCTTCCATAGACCACCTCATGTTGGGCAGTATAAACCCTGTAGTTGGATCTCCACCTGCATATCGTGCATCCCCTATGTCCCATGATGTTGGATCTCCTCCTATTGATACATATACTAACAGAGTTCAAAACTATAGAATTCCAAGTCATTCAAAGGCTCCTAGTTATGATGAGTATCAGCTTTCACCTCCATTTTCAGCATCTCCATCCCCATCTCCACCAACATACTTGTCTAGTGGCAGTTTTGGTCCTATGCAAACACGAATTCGTTCAGAAACTGCCCCTGTAAGCATCCCTAATCCAATGGGGGTGAAAGACAGCAGAGATGATTCGGGCCGGTTCTCAGGATTGTTGTCCTCCAGTGGCTCACCACGCGTTGGTTTTTCTAGAAGCTCCAGTAGATTATCTTTTCAAGATGATATGGATGATTGTGAGTTCTCATGCCCTTTCGATGTGGATGATGTTGACACAACCGACTTTCATGCCAGTCAAAACGATGGCAAAAAAGCTTCAGAGTTTACTTCCCAGTCATTGCCAATAGGTAGAAAGTCACCAGGTGCTGCTGTTGGCGTTCTTGTTCACATGCTAAGAACAGCTCCACCCCTGCGCCAAGATTCAAGCTGTTACTCTTCTGACTCCATGAAACCTGAACACGAGGAAGGAGTTACTACAGCTTCTGGTTTCTTTATGCCTCGAAAGACATCTGATGCCCTGGAGGAGCTCAGAAGTTACAGAGAATTGAAAGACCTTCTAATTTCAAAGAGTGGAATGAGGGTGCTCACCAAAGAAGAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04211 map04136 map04138 map04140 map04211

Pfam Domains

Protein Families

ATG13

Protein Analysis

445

Amino Acids

48.61

Weight (kDa)

5.3

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49590 AT3G49590 AT3G49590
fragaria_vesca	FvH4_7g33350 FvH4_7g33350 FvH4_7g33680
malus_domestica	MD01G1231700.v1.1 MD07G1303800.v1.1
prunus_persica	Prupe.2G322400_v2.0.a1 Prupe.2G322400_v2.0.a1
pyrus_communis	pycom01g23960 pycom07g27650 pycom07g27660
rosa_chinensis	RchiOBHm_Chr1g0383331
rosa_laevigata	RLG00000026112
rosa_multiflora	Rmu_sc0007173.1_g000015
rosa_roxburghii	Rroxscaffold_4G00277390
rosa_rugosa	Rorug01G0440500
rosa_samantha	Rh1AG466400 Rh1BG423700 Rh1CG436900 Rh1DG456400
rosa_wichuraiana	Rw1G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc36I	ACCTGC	1 cut(s)	604
AccB7I	CCANNNNNTGG	1 cut(s)	917
AccII	CGCG	1 cut(s)	915
AciI	CCGC	3 cut(s)	143, 397, 539
AclWI	GGATC	5 cut(s)	104, 117, 320, 595, 640
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	3 cut(s)	181, 678, 804
AcuI	CTGAAG	1 cut(s)	1035
AdeI	CACNNNGTG	1 cut(s)	1097
AfiI	CCNNNNNNNGG	6 cut(s)	32, 33, 336, 562, 584, 917
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	9 cut(s)	206, 442, 456, 668, 693, 953, 1158, 1282, 1299
AjnI	CCWGG	3 cut(s)	391, 1093, 1251
AluBI	AGCT	9 cut(s)	75, 530, 721, 933, 1049, 1136, 1161, 1214, 1261
AluI	AGCT	9 cut(s)	75, 530, 721, 933, 1049, 1136, 1161, 1214, 1261
Alw21I	GWGCWC	2 cut(s)	1263, 1320
AlwI	GGATC	5 cut(s)	104, 117, 320, 595, 640
AlwNI	CAGNNNCTG	3 cut(s)	818, 1100, 1217
AoxI	GGCC	3 cut(s)	384, 394, 874
ApeKI	GCWGC	1 cut(s)	1100
ApoI	RAATTY	3 cut(s)	181, 678, 804
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	808
AspA2I	CCTAGG	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	1149
AspS9I	GGNCC	3 cut(s)	194, 788, 874
AsuHPI	GGTGA	6 cut(s)	281, 717, 862, 900, 1083, 1312
AvaII	GGWCC	2 cut(s)	194, 788
AvrII	CCTAGG	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	1263
BauI	CACGAG	1 cut(s)	1193
BbsI	GAAGAC	2 cut(s)	296, 306
Bbv12I	GWGCWC	2 cut(s)	1263, 1320
BbvI	GCAGC	1 cut(s)	1087
BccI	CCATC	5 cut(s)	100, 205, 754, 760, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	1004, 1038
BciT130I	CCWGG	3 cut(s)	393, 1095, 1253
BfaI	CTAG	5 cut(s)	96, 246, 702, 774, 927
BfmI	CTRYAG	4 cut(s)	378, 579, 673, 1209
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	3 cut(s)	397, 540, 1101
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	3 cut(s)	398, 541, 1102
Bme1390I	CCNGG	3 cut(s)	393, 1095, 1253
Bme18I	GGWCC	2 cut(s)	194, 788
BmgT120I	GGNCC	3 cut(s)	194, 788, 874
BmiI	GGNNCC	2 cut(s)	111, 699
BmrFI	CCNGG	3 cut(s)	393, 1095, 1253
BmrI	ACTGGG	1 cut(s)	1060
BmsI	GCATC	5 cut(s)	345, 617, 749, 840, 1237
BmuI	ACTGGG	1 cut(s)	1060
BpiI	GAAGAC	2 cut(s)	296, 306
BpmI	CTGGAG	3 cut(s)	883, 919, 1274
BpuEI	CTTGAG	3 cut(s)	319, 467, 535
BsaBI	GATNNNNATC	3 cut(s)	119, 441, 714
BsaJI	CCNNGG	2 cut(s)	245, 1251
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 33, 336, 562, 584, 917
Bse118I	RCCGGY	1 cut(s)	876
Bse1I	ACTGG	5 cut(s)	271, 900, 936, 1026, 1066
Bse3DI	GCAATG	1 cut(s)	1070
Bse8I	GATNNNNATC	3 cut(s)	119, 441, 714
BseBI	CCWGG	3 cut(s)	393, 1095, 1253
BseDI	CCNNGG	2 cut(s)	245, 1251
BseGI	GGATG	5 cut(s)	608, 746, 831, 970, 1003
BseJI	GATNNNNATC	3 cut(s)	119, 441, 714
BseLI	CCNNNNNNNGG	6 cut(s)	32, 33, 336, 562, 584, 917
BseMI	GCAATG	1 cut(s)	1070
BseMII	CTCAG	2 cut(s)	897, 1276
BseNI	ACTGG	5 cut(s)	271, 900, 936, 1026, 1066
BseRI	GAGGAG	3 cut(s)	359, 627, 1271
BseXI	GCAGC	1 cut(s)	1087
Bsh1236I	CGCG	1 cut(s)	915
BshFI	GGCC	3 cut(s)	386, 396, 876
BsiHKAI	GWGCWC	2 cut(s)	1263, 1320
BsiSI	CCGG	1 cut(s)	877
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	6 cut(s)	32, 33, 336, 562, 584, 917
BsmFI	GGGAC	1 cut(s)	604
BsnI	GGCC	3 cut(s)	386, 396, 876
Bsp1286I	GDGCHC	2 cut(s)	1263, 1320
Bsp143I	GATC	4 cut(s)	109, 325, 587, 632
BspACI	CCGC	3 cut(s)	143, 397, 539
BspANI	GGCC	3 cut(s)	386, 396, 876
BspCNI	CTCAG	2 cut(s)	896, 1275
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	2 cut(s)	111, 699
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	5 cut(s)	104, 117, 320, 595, 640
BsrDI	GCAATG	1 cut(s)	1070
BsrFI	RCCGGY	1 cut(s)	876
BsrI	ACTGG	5 cut(s)	271, 900, 936, 1026, 1066
BssAI	RCCGGY	1 cut(s)	876
BssECI	CCNNGG	2 cut(s)	245, 1251
BssMI	GATC	4 cut(s)	109, 325, 587, 632
BssSI	CACGAG	1 cut(s)	1193
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	1193
Bst2UI	CCWGG	3 cut(s)	393, 1095, 1253
Bst4CI	ACNGT	2 cut(s)	17, 275
Bst6I	CTCTTC	2 cut(s)	1174, 1323
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	320, 883, 1127, 1262
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	5 cut(s)	608, 746, 831, 970, 1003
BstFNI	CGCG	1 cut(s)	915
BstHHI	GCGC	1 cut(s)	1149
BstKTI	GATC	4 cut(s)	112, 328, 590, 635
BstMBI	GATC	4 cut(s)	109, 325, 587, 632
BstMWI	GCNNNNNNNGC	3 cut(s)	536, 605, 912
BstNI	CCWGG	3 cut(s)	393, 1095, 1253
BstNSI	RCATGY	1 cut(s)	1126
BstSCI	CCNGG	3 cut(s)	391, 1093, 1251
BstSFI	CTRYAG	4 cut(s)	378, 579, 673, 1209
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	1 cut(s)	1087
BstV2I	GAAGAC	2 cut(s)	296, 306
BstX2I	RGATCY	4 cut(s)	109, 325, 587, 632
BstXI	CCANNNNNNTGG	2 cut(s)	530, 629
BstYI	RGATCY	4 cut(s)	109, 325, 587, 632
BsuRI	GGCC	3 cut(s)	386, 396, 876
BtsCI	GGATG	5 cut(s)	608, 746, 831, 970, 1003
BtsIMutI	CAGTG	1 cut(s)	907
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	3 cut(s)	818, 1100, 1217
CfoI	GCGC	1 cut(s)	1149
Cfr10I	RCCGGY	1 cut(s)	876
Cfr13I	GGNCC	3 cut(s)	194, 788, 874
CseI	GACGC	1 cut(s)	508
CsiI	ACCWGGT	1 cut(s)	1093
CviAII	CATG	7 cut(s)	140, 559, 623, 981, 1022, 1123, 1180
DdeI	CTNAG	4 cut(s)	320, 883, 1127, 1262
DpnI	GATC	4 cut(s)	111, 327, 589, 634
DpnII	GATC	4 cut(s)	109, 325, 587, 632
DraIII	CACNNNGTG	1 cut(s)	1097
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	1174, 1323
EarI	CTCTTC	2 cut(s)	1174, 1323
Ecl136II	GAGCTC	1 cut(s)	1261
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	1263
Eco47I	GGWCC	2 cut(s)	194, 788
Eco53kI	GAGCTC	1 cut(s)	1261
Eco57I	CTGAAG	1 cut(s)	1035
EcoICRI	GAGCTC	1 cut(s)	1261
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoRI	GAATTC	3 cut(s)	181, 678, 804
EcoRII	CCWGG	3 cut(s)	391, 1093, 1251
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	1263
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	7 cut(s)	143, 562, 626, 984, 1025, 1126, 1183
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	7 cut(s)	139, 558, 622, 980, 1021, 1122, 1179
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	397, 540, 1101
FokI	GGATG	5 cut(s)	595, 733, 818, 977, 1010
FriOI	GRGCYC	1 cut(s)	1263
Fsp4HI	GCNGC	3 cut(s)	397, 540, 1101
FspBI	CTAG	5 cut(s)	96, 246, 702, 774, 927
GlaI	GCGC	1 cut(s)	1148
GluI	GCNGC	3 cut(s)	397, 540, 1101
GsuI	CTGGAG	3 cut(s)	883, 919, 1274
HaeIII	GGCC	3 cut(s)	386, 396, 876
HapII	CCGG	1 cut(s)	877
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	1149
Hin1II	CATG	7 cut(s)	143, 562, 626, 984, 1025, 1126, 1183
Hin6I	GCGC	1 cut(s)	1147
HinP1I	GCGC	1 cut(s)	1147
HincII	GTYRAC	2 cut(s)	166, 1006
HindII	GTYRAC	2 cut(s)	166, 1006
HindIII	AAGCTT	2 cut(s)	73, 1047
HinfI	GANTC	5 cut(s)	29, 92, 869, 1154, 1175
HpaII	CCGG	1 cut(s)	877
HphI	GGTGA	6 cut(s)	281, 717, 862, 900, 1083, 1312
Hpy166II	GTNNAC	5 cut(s)	166, 523, 1006, 1059, 1120
Hpy188I	TCNGA	9 cut(s)	12, 69, 114, 436, 814, 1054, 1174, 1246, 1265
Hpy188III	TCNNGA	5 cut(s)	96, 446, 885, 927, 953
Hpy8I	GTNNAC	5 cut(s)	166, 523, 1006, 1059, 1120
HpyAV	CCTTC	4 cut(s)	340, 462, 1193, 1298
HpyCH4III	ACNGT	2 cut(s)	17, 275
HpyCH4V	TGCA	5 cut(s)	79, 358, 599, 608, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	536, 605, 912
HpyF3I	CTNAG	4 cut(s)	320, 883, 1127, 1262
Hsp92II	CATG	7 cut(s)	143, 562, 626, 984, 1025, 1126, 1183
HspAI	GCGC	1 cut(s)	1147
Kzo9I	GATC	4 cut(s)	109, 325, 587, 632
LmnI	GCTCC	5 cut(s)	379, 703, 938, 1141, 1258
Lsp1109I	GCAGC	1 cut(s)	1087
LweI	GCATC	5 cut(s)	345, 617, 749, 840, 1237
MabI	ACCWGGT	1 cut(s)	1093
MaeI	CTAG	5 cut(s)	96, 246, 702, 774, 927
MaeIII	GTNAC	6 cut(s)	269, 412, 1089, 1163, 1204, 1268
MalI	GATC	4 cut(s)	111, 327, 589, 634
MboI	GATC	4 cut(s)	109, 325, 587, 632
MboII	GAAGA	5 cut(s)	56, 147, 301, 306, 1161
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	4 cut(s)	109, 325, 587, 632
MhlI	GDGCHC	2 cut(s)	1263, 1320
MluCI	AATT	9 cut(s)	59, 151, 181, 306, 477, 678, 804, 1277, 1293
MluI	ACGCGT	1 cut(s)	913
MlyI	GAGTC	2 cut(s)	86, 1169
MmeI	TCCRAC	2 cut(s)	565, 610
MroXI	GAANNNNTTC	1 cut(s)	808
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	1 cut(s)	877
MspR9I	CCNGG	3 cut(s)	393, 1095, 1253
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	3 cut(s)	393, 1095, 1253
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	3 cut(s)	536, 605, 912
NdeII	GATC	4 cut(s)	109, 325, 587, 632
NlaIII	CATG	7 cut(s)	143, 562, 626, 984, 1025, 1126, 1183
NlaIV	GGNNCC	2 cut(s)	111, 699
NmuCI	GTSAC	3 cut(s)	269, 412, 1089
NspI	RCATGY	1 cut(s)	1126
PaqCI	CACCTGC	1 cut(s)	604
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	3 cut(s)	29, 869, 1154
PflMI	CCANNNNNTGG	1 cut(s)	917
PkrI	GCNGC	3 cut(s)	398, 541, 1102
PleI	GAGTC	2 cut(s)	86, 1169
PpsI	GAGTC	2 cut(s)	86, 1169
Psp124BI	GAGCTC	1 cut(s)	1263
Psp6I	CCWGG	3 cut(s)	391, 1093, 1251
PspGI	CCWGG	3 cut(s)	391, 1093, 1251
PspN4I	GGNNCC	2 cut(s)	111, 699
PspPI	GGNCC	3 cut(s)	194, 788, 874
PstNI	CAGNNNCTG	3 cut(s)	818, 1100, 1217
PsuI	RGATCY	4 cut(s)	109, 325, 587, 632
PvuII	CAGCTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	1263
SatI	GCNGC	3 cut(s)	397, 540, 1101
Sau3AI	GATC	4 cut(s)	109, 325, 587, 632
Sau96I	GGNCC	3 cut(s)	194, 788, 874
SchI	GAGTC	2 cut(s)	86, 1169
ScrFI	CCNGG	3 cut(s)	393, 1095, 1253
SduI	GDGCHC	2 cut(s)	1263, 1320
SexAI	ACCWGGT	1 cut(s)	1093
SfaNI	GCATC	5 cut(s)	345, 617, 749, 840, 1237
SfcI	CTRYAG	4 cut(s)	378, 579, 673, 1209
SinI	GGWCC	2 cut(s)	194, 788
SmlI	CTYRAG	3 cut(s)	334, 446, 514
SmoI	CTYRAG	3 cut(s)	334, 446, 514
Sse9I	AATT	9 cut(s)	59, 151, 181, 306, 477, 678, 804, 1277, 1293
SsiI	CCGC	3 cut(s)	143, 397, 539
SspMI	CTAG	5 cut(s)	96, 246, 702, 774, 927
SstI	GAGCTC	1 cut(s)	1263
StyD4I	CCNGG	3 cut(s)	391, 1093, 1251
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	17, 275
TaqI	TCGA	3 cut(s)	123, 990, 1234
TasI	AATT	9 cut(s)	59, 151, 181, 306, 477, 678, 804, 1277, 1293
TauI	GCSGC	2 cut(s)	399, 542
TfiI	GAWTC	3 cut(s)	29, 869, 1154
TscAI	CASTG	1 cut(s)	907
TseFI	GTSAC	3 cut(s)	269, 412, 1089
TseI	GCWGC	1 cut(s)	1100
Tsp45I	GTSAC	3 cut(s)	269, 412, 1089
TspDTI	ATGAA	5 cut(s)	128, 147, 252, 1010, 1196
TspRI	CASTG	1 cut(s)	907
Van91I	CCANNNNNTGG	1 cut(s)	917
VpaK11BI	GGWCC	2 cut(s)	194, 788
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	3 cut(s)	181, 678, 804
XbaI	TCTAGA	2 cut(s)	95, 926
XceI	RCATGY	1 cut(s)	1126
XmaJI	CCTAGG	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	5 cut(s)	96, 246, 702, 774, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.