Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008723

Physical Location & Seq

Genomic Coordinates Forward (+)

69156354 .. 69158889

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG436900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGGATTTTCAGAACAGTTATCAGCCCGAATCAGGGAAATTGGAACAGATTGTTTCCCAATTTCTTCTGAAAAGCTTGCATATTATTTTGGACTCTAGGGTACCTTCTCTTCACCTGCATGATCGCAGTGGAGAGCTTTCATTGAATTCTCGGGTGAGGAAGAGTGACAAATGGTTCAACTTAGTACTAGGGGACCGTCCTGCAGCTCTTGAGAATTTGAACTTTTGGCACAGAAATGTGATGGATCCGATGATAATCGACATCATACTTGTTCATGCGGGGTCTAATTCTTCATCAGTTGACAATCTGTTTGGGAATTCGGGGGCTGGTCCATCTGTTGAAACAATCATTGAGAGGTGGGTTGTTCAGTATGAAACTCCTAGGGTTGTGGCTAATCAAACTGGTGACAGTTTAGCATACAAGAAGACATATAAGAAGTCAATTGTACTTTTACGTGCTCTTTATTCATATATGAGGCTTCTCCCAGCTTATAGGATCTTTAGACAGCTAAGTACAACTCGTCAGACTTATGATTTTGATATCATTTACAAGGTGTCTTCACTAAGAGATCCCTTCTCAAGGGCGGAGGAGGAAATGATGCAGGAGTTCAGTTTTGCTCCTGTAGAGGCCAATCCTGGTCGCCTTTCTTTGTCTGTGACTTATCGTAAAATGCTGTCTGATTTCAATCTTGAGCCTTCAACACCTATGCCACCAAAGATAATTACAGATTATGTTGGTAGTCCTGCTACTGACCCCTTGAGGTCTTTCCCCTCATCAGTGAGGGGTGATCGCTCAACTTCCTTTCCATTGGTAAAAGTACAACCTTCATCTGCCGGACCATTTCAGCGTCCACACAGCTGGACAAGCGGCTTCCATAGACCACCTCATGTTGGGCAGTATAAACCTGTAGTTGGATCTCCACCTGCATATCGTGCATCCCCTATGTCCCATGATGTTGGATCTCCTCCTATTGATACATATACTAACAGAGTTCAAAACCATAGAATTCCAAGTCATTCAAAGACTCCTAGTTATGATGAGTATCAGCTTTCACCTCCATTTTCAGCATCTCCATCCCCATCTCCACCAACATACTTGTCTAGTGGCAGTTTTGGTCCTATGCAAACACGAATTCGTTCAGAAACTGCCCCCGTAAGCATCCCTAATCCAATGGGGGGTAAGGGCTCCAGATACCTTTCTCCCAATTTTTCTGATCCAAGTAGAAATTCCCTTCCTCCTTTATCTCCGAGAAGCACAAGAAATGAACCTTCCTCACAAGAGTCTCCATCTGGAATAAGGGCATTTAGAAAACTAGACGGTTCAAGGGCTGGAGATATGCACCCTGGTTTTCAAAAGGTGAAAGACAGCAGAGATGATTCGGGCAGGTTCTCAGGATTGTTGTCCTCCAGTGGCTCACCACGTGTTGGTTTTTCTAGAAGCTCCAGTAGATTATCTTTTCAAGATGATATGGATGATTGTGAGTTCTCATGCCCTTTCGATGTGGATGATGTTGACACAACCGACTTTCACGCCAGTCAAAACGATGGCAAAAAAGCTTCAGAGTTTACTTCCCAGTCATTGCCAATAGGTAGAAAGTCACCAGGTGCTGCTGTTGGCGTTCTTGTTCACATGCTAAGAACAGCTCCGCCCCTGCGCCAAGATTCAAGCTGTTACTCTTCTGACTCCATGAAGCCTGAACACGAGGAAGGAGTTACTACAGCTTCTGGTTTCTTTATGCCTCGAAAGACATCTGATGCCCTGGAGGAGCTCAGAAGTTACAGAGAAATGAAAGACCTTCTAATTTCAAAGAGTGGAATGAGGGTGCTCACCAAAGAAGAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04211 map04136 map04138 map04140 map04211

Pfam Domains

Protein Families

ATG13

Protein Analysis

614

Amino Acids

68.26

Weight (kDa)

8.93

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG13	PF10033	18 - 223	6.4e-36	Autophagy-related protein 13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49590 AT3G49590 AT3G49590
fragaria_vesca	FvH4_7g33350 FvH4_7g33350 FvH4_7g33680
malus_domestica	MD01G1231700.v1.1 MD07G1303800.v1.1
prunus_persica	Prupe.2G322400_v2.0.a1 Prupe.2G322400_v2.0.a1
pyrus_communis	pycom01g23960 pycom07g27650 pycom07g27660
rosa_chinensis	RchiOBHm_Chr1g0383331
rosa_laevigata	RLG00000026112
rosa_multiflora	Rmu_sc0007173.1_g000015
rosa_roxburghii	Rroxscaffold_4G00277390
rosa_rugosa	Rorug01G0440500
rosa_samantha	Rh1AG466400 Rh1BG423700 Rh1CG436900 Rh1DG456400
rosa_wichuraiana	Rw1G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	123, 931
Acc36I	ACCTGC	3 cut(s)	123, 931, 1374
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	1424
AciI	CCGC	4 cut(s)	278, 584, 867, 1646
AclWI	GGATC	7 cut(s)	239, 252, 503, 563, 922, 967, 1208
AcsI	RAATTY	6 cut(s)	145, 214, 316, 1005, 1131, 1225
AcuI	CTGAAG	1 cut(s)	1542
AcvI	CACGTG	1 cut(s)	1421
AdeI	CACNNNGTG	2 cut(s)	1421, 1604
AfaI	GTAC	5 cut(s)	102, 186, 447, 514, 819
AfiI	CCNNNNNNNGG	7 cut(s)	32, 33, 579, 890, 911, 1175, 1424
AflIII	ACRYGT	1 cut(s)	1420
AjnI	CCWGG	4 cut(s)	634, 1342, 1600, 1758
AjuI	GAANNNNNNNTTGG	2 cut(s)	1210, 1242
Alw21I	GWGCWC	3 cut(s)	460, 1770, 1827
Alw26I	GTCTC	1 cut(s)	1287
AlwI	GGATC	7 cut(s)	239, 252, 503, 563, 922, 967, 1208
AlwNI	CAGNNNCTG	3 cut(s)	1145, 1607, 1724
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	2 cut(s)	203, 1607
ApoI	RAATTY	6 cut(s)	145, 214, 316, 1005, 1131, 1225
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
Asp700I	GAANNNNTTC	1 cut(s)	1135
Asp718I	GGTACC	1 cut(s)	100
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	1656
AspS9I	GGNCC	4 cut(s)	193, 329, 836, 1115
AsuHPI	GGTGA	9 cut(s)	104, 166, 416, 797, 1044, 1369, 1407, 1590, 1819
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	4 cut(s)	193, 329, 836, 1115
AvrII	CCTAGG	1 cut(s)	380
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	2 cut(s)	1187, 1770
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
BauI	CACGAG	1 cut(s)	1700
BbrPI	CACGTG	1 cut(s)	1421
BbsI	GAAGAC	2 cut(s)	431, 549
Bbv12I	GWGCWC	3 cut(s)	460, 1770, 1827
BbvI	GCAGC	2 cut(s)	215, 1594
BccI	CCATC	6 cut(s)	235, 340, 1081, 1087, 1294, 1538
BciT130I	CCWGG	4 cut(s)	636, 1344, 1602, 1760
BcoDI	GTCTC	1 cut(s)	1287
BfaI	CTAG	7 cut(s)	96, 188, 381, 1029, 1101, 1313, 1434
BfmI	CTRYAG	4 cut(s)	201, 621, 906, 1716
BfuAI	ACCTGC	3 cut(s)	123, 931, 1374
BisI	GCNGC	3 cut(s)	204, 868, 1608
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	3 cut(s)	205, 869, 1609
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	4 cut(s)	636, 1344, 1602, 1760
Bme18I	GGWCC	4 cut(s)	193, 329, 836, 1115
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	4 cut(s)	193, 329, 836, 1115
BmiI	GGNNCC	4 cut(s)	102, 194, 246, 1186
BmrFI	CCNGG	4 cut(s)	636, 1344, 1602, 1760
BmrI	ACTGGG	1 cut(s)	1567
BmsI	GCATC	5 cut(s)	588, 944, 1076, 1167, 1744
BmuI	ACTGGG	1 cut(s)	1567
BpiI	GAAGAC	2 cut(s)	431, 549
BpmI	CTGGAG	5 cut(s)	1171, 1350, 1390, 1426, 1781
BpuEI	CTTGAG	4 cut(s)	230, 562, 710, 778
BsaAI	YACGTR	2 cut(s)	455, 1421
BsaBI	GATNNNNATC	3 cut(s)	254, 684, 1041
BsaJI	CCNNGG	3 cut(s)	380, 1342, 1758
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 33, 579, 890, 911, 1175, 1424
Bse1I	ACTGG	5 cut(s)	406, 1407, 1443, 1533, 1573
Bse3DI	GCAATG	1 cut(s)	1577
Bse8I	GATNNNNATC	3 cut(s)	254, 684, 1041
BseBI	CCWGG	4 cut(s)	636, 1344, 1602, 1760
BseDI	CCNNGG	3 cut(s)	380, 1342, 1758
BseGI	GGATG	5 cut(s)	935, 1073, 1158, 1477, 1510
BseJI	GATNNNNATC	3 cut(s)	254, 684, 1041
BseLI	CCNNNNNNNGG	7 cut(s)	32, 33, 579, 890, 911, 1175, 1424
BseMI	GCAATG	1 cut(s)	1577
BseMII	CTCAG	2 cut(s)	1404, 1783
BseNI	ACTGG	5 cut(s)	406, 1407, 1443, 1533, 1573
BseRI	GAGGAG	3 cut(s)	602, 954, 1778
BseXI	GCAGC	2 cut(s)	215, 1594
BseYI	CCCAGC	1 cut(s)	484
BshFI	GGCC	1 cut(s)	629
BshNI	GGYRCC	1 cut(s)	100
BsiHKAI	GWGCWC	3 cut(s)	460, 1770, 1827
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	834
BslFI	GGGAC	2 cut(s)	206, 931
BslI	CCNNNNNNNGG	7 cut(s)	32, 33, 579, 890, 911, 1175, 1424
BsmAI	GTCTC	1 cut(s)	1287
BsmFI	GGGAC	2 cut(s)	206, 931
BsnI	GGCC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	460, 1187, 1770, 1827
Bsp143I	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
BspACI	CCGC	4 cut(s)	278, 584, 867, 1646
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	2 cut(s)	1403, 1782
BspLI	GGNNCC	4 cut(s)	102, 194, 246, 1186
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	3 cut(s)	123, 931, 1374
BspPI	GGATC	7 cut(s)	239, 252, 503, 563, 922, 967, 1208
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	1577
BsrI	ACTGG	5 cut(s)	406, 1407, 1443, 1533, 1573
BssECI	CCNNGG	3 cut(s)	380, 1342, 1758
BssMI	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
BssSI	CACGAG	1 cut(s)	1700
BssT1I	CCWWGG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	1700
Bst2UI	CCWGG	4 cut(s)	636, 1344, 1602, 1760
Bst4CI	ACNGT	4 cut(s)	17, 197, 410, 1319
Bst6I	CTCTTC	4 cut(s)	114, 155, 1681, 1830
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstBAI	YACGTR	2 cut(s)	455, 1421
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	6 cut(s)	181, 509, 563, 1390, 1634, 1769
BstENI	CCTNNNNNAGG	1 cut(s)	577
BstF5I	GGATG	5 cut(s)	935, 1073, 1158, 1477, 1510
BstHHI	GCGC	1 cut(s)	1656
BstKTI	GATC	8 cut(s)	124, 247, 498, 571, 790, 917, 962, 1216
BstMAI	GTCTC	1 cut(s)	1287
BstMBI	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
BstMWI	GCNNNNNNNGC	2 cut(s)	864, 932
BstNI	CCWGG	4 cut(s)	636, 1344, 1602, 1760
BstNSI	RCATGY	1 cut(s)	1633
BstSCI	CCNGG	4 cut(s)	634, 1342, 1600, 1758
BstSFI	CTRYAG	4 cut(s)	201, 621, 906, 1716
BstV1I	GCAGC	2 cut(s)	215, 1594
BstV2I	GAAGAC	2 cut(s)	431, 549
BstX2I	RGATCY	5 cut(s)	244, 495, 568, 914, 959
BstXI	CCANNNNNNTGG	2 cut(s)	858, 956
BstYI	RGATCY	5 cut(s)	244, 495, 568, 914, 959
BsuRI	GGCC	1 cut(s)	629
BtsCI	GGATG	5 cut(s)	935, 1073, 1158, 1477, 1510
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	3 cut(s)	133, 783, 1414
BveI	ACCTGC	3 cut(s)	123, 931, 1374
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	3 cut(s)	1145, 1607, 1724
CfoI	GCGC	1 cut(s)	1656
Cfr13I	GGNCC	4 cut(s)	193, 329, 836, 1115
CseI	GACGC	1 cut(s)	836
CsiI	ACCWGGT	1 cut(s)	1600
Csp6I	GTAC	5 cut(s)	101, 185, 446, 513, 818
CviAII	CATG	7 cut(s)	119, 275, 887, 950, 1488, 1630, 1687
CviQI	GTAC	5 cut(s)	101, 185, 446, 513, 818
DdeI	CTNAG	6 cut(s)	181, 509, 563, 1390, 1634, 1769
DpnI	GATC	8 cut(s)	123, 246, 497, 570, 789, 916, 961, 1215
DpnII	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
DraIII	CACNNNGTG	2 cut(s)	1421, 1604
Eam1104I	CTCTTC	4 cut(s)	114, 155, 1681, 1830
EarI	CTCTTC	4 cut(s)	114, 155, 1681, 1830
EciI	GGCGGA	2 cut(s)	599, 1635
Ecl136II	GAGCTC	1 cut(s)	1768
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	2 cut(s)	1187, 1770
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	4 cut(s)	193, 329, 836, 1115
Eco53kI	GAGCTC	1 cut(s)	1768
Eco57I	CTGAAG	1 cut(s)	1542
Eco72I	CACGTG	1 cut(s)	1421
Eco88I	CYCGRG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	1768
EcoNI	CCTNNNNNAGG	1 cut(s)	577
EcoRI	GAATTC	4 cut(s)	145, 316, 1005, 1131
EcoRII	CCWGG	4 cut(s)	634, 1342, 1600, 1758
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	1187, 1770
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	7 cut(s)	122, 278, 890, 953, 1491, 1633, 1690
FaqI	GGGAC	2 cut(s)	206, 931
FatI	CATG	7 cut(s)	118, 274, 886, 949, 1487, 1629, 1686
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	204, 868, 1608
FokI	GGATG	5 cut(s)	922, 1060, 1145, 1484, 1517
FriOI	GRGCYC	2 cut(s)	1187, 1770
Fsp4HI	GCNGC	3 cut(s)	204, 868, 1608
FspBI	CTAG	7 cut(s)	96, 188, 381, 1029, 1101, 1313, 1434
GlaI	GCGC	1 cut(s)	1655
GluI	GCNGC	3 cut(s)	204, 868, 1608
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	5 cut(s)	1171, 1350, 1390, 1426, 1781
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	1 cut(s)	834
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	1656
Hin1II	CATG	7 cut(s)	122, 278, 890, 953, 1491, 1633, 1690
Hin6I	GCGC	1 cut(s)	1654
HinP1I	GCGC	1 cut(s)	1654
HincII	GTYRAC	2 cut(s)	301, 1513
HindII	GTYRAC	2 cut(s)	301, 1513
HindIII	AAGCTT	2 cut(s)	73, 1554
HinfI	GANTC	7 cut(s)	29, 92, 1024, 1280, 1376, 1661, 1682
HpaII	CCGG	1 cut(s)	834
HphI	GGTGA	9 cut(s)	104, 166, 416, 797, 1044, 1369, 1407, 1590, 1819
Hpy166II	GTNNAC	5 cut(s)	301, 851, 1513, 1566, 1627
Hpy188III	TCNNGA	7 cut(s)	209, 689, 1188, 1290, 1392, 1434, 1460
Hpy8I	GTNNAC	5 cut(s)	301, 851, 1513, 1566, 1627
HpyAV	CCTTC	8 cut(s)	114, 583, 705, 834, 1241, 1278, 1700, 1805
HpyCH4III	ACNGT	4 cut(s)	17, 197, 410, 1319
HpyCH4IV	ACGT	2 cut(s)	454, 1420
HpyCH4V	TGCA	8 cut(s)	79, 118, 203, 601, 926, 935, 1123, 1339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	864, 932
HpyF3I	CTNAG	6 cut(s)	181, 509, 563, 1390, 1634, 1769
HpySE526I	ACGT	2 cut(s)	454, 1420
Hsp92II	CATG	7 cut(s)	122, 278, 890, 953, 1491, 1633, 1690
HspAI	GCGC	1 cut(s)	1654
KpnI	GGTACC	1 cut(s)	104
Kzo9I	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
LmnI	GCTCC	5 cut(s)	622, 1190, 1445, 1648, 1765
Lsp1109I	GCAGC	2 cut(s)	215, 1594
LweI	GCATC	5 cut(s)	588, 944, 1076, 1167, 1744
MabI	ACCWGGT	1 cut(s)	1600
MaeI	CTAG	7 cut(s)	96, 188, 381, 1029, 1101, 1313, 1434
MaeII	ACGT	2 cut(s)	454, 1420
MaeIII	GTNAC	7 cut(s)	164, 404, 655, 1596, 1670, 1711, 1775
MalI	GATC	8 cut(s)	123, 246, 497, 570, 789, 916, 961, 1215
MboI	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
MboII	GAAGA	7 cut(s)	56, 101, 172, 282, 436, 549, 1668
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	5 cut(s)	244, 495, 568, 914, 959
MhlI	GDGCHC	4 cut(s)	460, 1187, 1770, 1827
MlyI	GAGTC	4 cut(s)	86, 1018, 1289, 1676
MmeI	TCCRAC	2 cut(s)	892, 937
MroXI	GAANNNNTTC	1 cut(s)	1135
MslI	CAYNNNNRTG	2 cut(s)	117, 234
MspA1I	CMGCKG	1 cut(s)	858
MspI	CCGG	1 cut(s)	834
MspR9I	CCNGG	4 cut(s)	636, 1344, 1602, 1760
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	4 cut(s)	636, 1344, 1602, 1760
MwoI	GCNNNNNNNGC	2 cut(s)	864, 932
NdeII	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
NlaIII	CATG	7 cut(s)	122, 278, 890, 953, 1491, 1633, 1690
NlaIV	GGNNCC	4 cut(s)	102, 194, 246, 1186
NmuCI	GTSAC	4 cut(s)	164, 404, 655, 1596
NspI	RCATGY	1 cut(s)	1633
PaqCI	CACCTGC	2 cut(s)	123, 931
PdmI	GAANNNNTTC	1 cut(s)	1135
PfeI	GAWTC	3 cut(s)	29, 1376, 1661
PflMI	CCANNNNNTGG	1 cut(s)	1424
PkrI	GCNGC	3 cut(s)	205, 869, 1609
PleI	GAGTC	4 cut(s)	86, 1018, 1288, 1676
PmaCI	CACGTG	1 cut(s)	1421
PmlI	CACGTG	1 cut(s)	1421
PpsI	GAGTC	4 cut(s)	86, 1018, 1288, 1676
Ppu21I	YACGTR	2 cut(s)	455, 1421
Psp124BI	GAGCTC	1 cut(s)	1770
Psp6I	CCWGG	4 cut(s)	634, 1342, 1600, 1758
PspCI	CACGTG	1 cut(s)	1421
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	4 cut(s)	634, 1342, 1600, 1758
PspN4I	GGNNCC	4 cut(s)	102, 194, 246, 1186
PspPI	GGNCC	4 cut(s)	193, 329, 836, 1115
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	3 cut(s)	1145, 1607, 1724
PsuI	RGATCY	5 cut(s)	244, 495, 568, 914, 959
PvuII	CAGCTG	1 cut(s)	858
RsaI	GTAC	5 cut(s)	102, 186, 447, 514, 819
RsaNI	GTAC	5 cut(s)	101, 185, 446, 513, 818
RseI	CAYNNNNRTG	2 cut(s)	117, 234
SacI	GAGCTC	1 cut(s)	1770
SatI	GCNGC	3 cut(s)	204, 868, 1608
Sau3AI	GATC	8 cut(s)	121, 244, 495, 568, 787, 914, 959, 1213
Sau96I	GGNCC	4 cut(s)	193, 329, 836, 1115
ScaI	AGTACT	1 cut(s)	186
SchI	GAGTC	4 cut(s)	86, 1018, 1289, 1676
ScrFI	CCNGG	4 cut(s)	636, 1344, 1602, 1760
SduI	GDGCHC	4 cut(s)	460, 1187, 1770, 1827
SexAI	ACCWGGT	1 cut(s)	1600
SfaNI	GCATC	5 cut(s)	588, 944, 1076, 1167, 1744
SfcI	CTRYAG	4 cut(s)	201, 621, 906, 1716
SinI	GGWCC	4 cut(s)	193, 329, 836, 1115
SmiMI	CAYNNNNRTG	2 cut(s)	117, 234
SmlI	CTYRAG	4 cut(s)	209, 577, 689, 757
SmoI	CTYRAG	4 cut(s)	209, 577, 689, 757
SsiI	CCGC	4 cut(s)	278, 584, 867, 1646
SspMI	CTAG	7 cut(s)	96, 188, 381, 1029, 1101, 1313, 1434
SstI	GAGCTC	1 cut(s)	1770
StyD4I	CCNGG	4 cut(s)	634, 1342, 1600, 1758
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	4 cut(s)	17, 197, 410, 1319
TaiI	ACGT	2 cut(s)	457, 1423
TaqI	TCGA	3 cut(s)	258, 1497, 1741
TatI	WGTACW	4 cut(s)	184, 445, 512, 817
TauI	GCSGC	1 cut(s)	870
TfiI	GAWTC	3 cut(s)	29, 1376, 1661
TscAI	CASTG	3 cut(s)	133, 783, 1414
TseFI	GTSAC	4 cut(s)	164, 404, 655, 1596
TseI	GCWGC	2 cut(s)	203, 1607
Tsp45I	GTSAC	4 cut(s)	164, 404, 655, 1596
TspDTI	ATGAA	9 cut(s)	129, 263, 282, 387, 456, 816, 1278, 1703, 1802
TspRI	CASTG	3 cut(s)	133, 783, 1414
Van91I	CCANNNNNTGG	1 cut(s)	1424
VpaK11BI	GGWCC	4 cut(s)	193, 329, 836, 1115
XagI	CCTNNNNNAGG	1 cut(s)	577
XapI	RAATTY	6 cut(s)	145, 214, 316, 1005, 1131, 1225
XbaI	TCTAGA	1 cut(s)	1433
XceI	RCATGY	1 cut(s)	1633
XmaJI	CCTAGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	1135
XspI	CTAG	7 cut(s)	96, 188, 381, 1029, 1101, 1313, 1434
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.