Rw1G040610

Autophagy-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
67825782 .. 67829234
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040610.1

Sequence Viewer

Length: 1611 bp
ATGGATTTTCAGAACAGCTATCAGCCCGAATCAGGGAAATTGGAACAGATTGTTTCCCAATTTCTTCTCAAAAGCTTGCATATTATTTTGGATTCTAGGGTACCTTCTCTTCACCCGCATGATCGCAGTGGAGAGCTTTCATTGAATTCTCGGGTGAGGAAGAGTGACAAATGGTTCAACTTAGTACTAGGGGACCGTCCTGCAGCTCTTGAGAATTTGAACTTTTGGCACAGAAATGTGATGGATCCGATGATAATCGACATCATACTTGTTCATGCGGGGTCTAATTCTTCATCAGTTGACAATCTGTTTGGGAATTCGGGGGCTGGTCCATCTGTTGAAACAATCATTGAGAGGTGGGTTGTTCAGTATGAAACTCCTAGGGTTGTGGCTAATCAAACTGGTGACAGTTTAGCATACAAGAAGACATATAAGAAGTCAATTGTACTTTTACGTGCTCTTTATTCATATATGAGGCTTCTCCCAGCTTATAGGATCTTTAGACAGCTAAGTACATCTCGTCAGACTTATGATTTTGATATCATTTACAAGGTGTCTTCACTAAGAGATCCCTTCTCAAGGGCGGAGGAGGAAATGATGCAGGAGTTCAGTTTTGCTCCTGTAGAGGCCAATCCTGGCCGCCTTTCTTTGTCTGTGACTTATCGTAAAATGCTGTCTGATTTCAATCTTGAGCCTTCAACACCTATGCCACCAAAGATAATTACAGATTATGTTGGTAGTCCTGCTACTGACCCCTTGAGGTCTTTCCCCTCATCAGTGAGGGGTGATCGCCCAACTTCCTTTCCATTGGGAAAAGTACAACCTTCATCTGCCGGACCATTTCAGCGTCCACACAGCTGGACAAGTGGCTTCCATAGACCACCTCATGTTGGGCAGTATAAACCTGTAGTTGGATCTCCACCTGCATATCGTGCATCCCCTATGTCCCATGATGTTGGATCTCCTCCTATTGATACATATACTAACAGAGTTCAAAACTATAGAGTTCCAAGTCATTCAAAGACTCCTAGTTATGATGAGTATCAGCTTTCACCTCCATTTTCAGCATCTCCATCCCCATCACCACCAACATACTTGTCTAGTGGCAGTTTTGGTCCTATGCAAACACGAATTCGTTCAGAAACTGCCCCCGTAAGCATCCCTAATCCAATGGGGGGTAAGGGCTACAGATACCTTTCTCCCAATTTTTCTGATCCAAGTAGAAATTCCCTTCCTCCTTTATCTCCGAGAAGCACAAGAAATGAACCGTCCTCACAAGAGTCTCCATCTGGAATAAGGGCATTTAGAAAACTAGATGGTTCAAGGGCTGGAGATATGCACCCTGGTTTTCAAAAGGTGAAAGACAGCAGAGATGATTCGGGCCGGTTCTCAGGATTGTTGTCCTCCAGTGGCTCACCACGCATTGGTTTTTCTAGAAGCTCCAGTAGATTATCTTTTCAAGATGATATGGATGATTGTGAGTTCTCATGCCCTTTCGATGTGGATGATGTTGACACAACCGACTTCACGCCAGATACGGGCTTCTTGAATTGCTGGGTTGTGAGTGATAATGAATACTTGCCGGAGTTGCCGAATAGTAAAATAGTCTGA

Protein Analysis

536

Amino Acids

59.84

Weight (kDa)

8.23

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG13 PF10033 18 - 223 3.1e-36 Autophagy-related protein 13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 931
Acc36I ACCTGC 1 cut(s) 931
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 1424
AciI CCGC 4 cut(s) 116, 278, 584, 640
AclWI GGATC 7 cut(s) 239, 252, 503, 563, 922, 967, 1208
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 5 cut(s) 145, 214, 316, 1131, 1225
AfaI GTAC 5 cut(s) 102, 186, 447, 514, 819
AfiI CCNNNNNNNGG 8 cut(s) 32, 33, 579, 890, 911, 1175, 1424, 1538
AjnI CCWGG 2 cut(s) 634, 1342
AjuI GAANNNNNNNTTGG 2 cut(s) 1210, 1242
AluBI AGCT 9 cut(s) 18, 75, 136, 206, 488, 508, 858, 1048, 1440
AluI AGCT 9 cut(s) 18, 75, 136, 206, 488, 508, 858, 1048, 1440
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 1 cut(s) 1287
AlwI GGATC 7 cut(s) 239, 252, 503, 563, 922, 967, 1208
AlwNI CAGNNNCTG 1 cut(s) 1145
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 3 cut(s) 627, 637, 1381
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 5 cut(s) 145, 214, 316, 1131, 1225
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
Asp700I GAANNNNTTC 1 cut(s) 1135
Asp718I GGTACC 1 cut(s) 100
AspA2I CCTAGG 1 cut(s) 380
AspS9I GGNCC 5 cut(s) 193, 329, 836, 1115, 1381
AsuHPI GGTGA 8 cut(s) 104, 166, 416, 797, 1044, 1074, 1369, 1407
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 4 cut(s) 193, 329, 836, 1115
AvrII CCTAGG 1 cut(s) 380
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BbsI GAAGAC 2 cut(s) 431, 549
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 215
BccI CCATC 6 cut(s) 235, 340, 1081, 1087, 1294, 1310
BciT130I CCWGG 2 cut(s) 636, 1344
BcoDI GTCTC 1 cut(s) 1287
BfaI CTAG 7 cut(s) 96, 188, 381, 1029, 1101, 1313, 1434
BfmI CTRYAG 5 cut(s) 201, 621, 906, 1000, 1186
BfuAI ACCTGC 1 cut(s) 931
BisI GCNGC 2 cut(s) 204, 640
BlnI CCTAGG 1 cut(s) 380
BlsI GCNGC 2 cut(s) 205, 641
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 636, 1344
Bme18I GGWCC 4 cut(s) 193, 329, 836, 1115
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 5 cut(s) 193, 329, 836, 1115, 1381
BmiI GGNNCC 3 cut(s) 102, 194, 246
BmrFI CCNGG 2 cut(s) 636, 1344
BmsI GCATC 4 cut(s) 588, 944, 1076, 1167
BpiI GAAGAC 2 cut(s) 431, 549
BpmI CTGGAG 3 cut(s) 1350, 1390, 1426
BpuEI CTTGAG 4 cut(s) 230, 562, 710, 778
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 3 cut(s) 254, 684, 1041
BsaJI CCNNGG 2 cut(s) 380, 1342
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 33, 579, 890, 911, 1175, 1424, 1538
Bse118I RCCGGY 1 cut(s) 1383
Bse1I ACTGG 3 cut(s) 406, 1407, 1443
Bse8I GATNNNNATC 3 cut(s) 254, 684, 1041
BseBI CCWGG 2 cut(s) 636, 1344
BseDI CCNNGG 2 cut(s) 380, 1342
BseGI GGATG 5 cut(s) 935, 1073, 1158, 1477, 1510
BseJI GATNNNNATC 3 cut(s) 254, 684, 1041
BseLI CCNNNNNNNGG 8 cut(s) 32, 33, 579, 890, 911, 1175, 1424, 1538
BseMII CTCAG 1 cut(s) 1404
BseNI ACTGG 3 cut(s) 406, 1407, 1443
BseRI GAGGAG 2 cut(s) 602, 954
BseXI GCAGC 1 cut(s) 215
BseYI CCCAGC 2 cut(s) 484, 1554
BshFI GGCC 3 cut(s) 629, 639, 1383
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 834, 1384, 1583
BslFI GGGAC 2 cut(s) 206, 931
BslI CCNNNNNNNGG 8 cut(s) 32, 33, 579, 890, 911, 1175, 1424, 1538
BsmAI GTCTC 1 cut(s) 1287
BsmFI GGGAC 2 cut(s) 206, 931
BsnI GGCC 3 cut(s) 629, 639, 1383
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
BspACI CCGC 4 cut(s) 116, 278, 584, 640
BspANI GGCC 3 cut(s) 629, 639, 1383
BspCNI CTCAG 1 cut(s) 1403
BspLI GGNNCC 3 cut(s) 102, 194, 246
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 7 cut(s) 239, 252, 503, 563, 922, 967, 1208
BspT107I GGYRCC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 1383
BsrI ACTGG 3 cut(s) 406, 1407, 1443
BssAI RCCGGY 1 cut(s) 1383
BssECI CCNNGG 2 cut(s) 380, 1342
BssMI GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 2 cut(s) 636, 1344
Bst4CI ACNGT 3 cut(s) 197, 410, 1269
Bst6I CTCTTC 2 cut(s) 114, 155
BstAPI GCANNNNNTGC 1 cut(s) 932
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 4 cut(s) 181, 509, 563, 1390
BstENI CCTNNNNNAGG 1 cut(s) 577
BstF5I GGATG 5 cut(s) 935, 1073, 1158, 1477, 1510
BstKTI GATC 8 cut(s) 124, 247, 498, 571, 790, 917, 962, 1216
BstMAI GTCTC 1 cut(s) 1287
BstMBI GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
BstMWI GCNNNNNNNGC 3 cut(s) 932, 1419, 1588
BstNI CCWGG 2 cut(s) 636, 1344
BstSCI CCNGG 2 cut(s) 634, 1342
BstSFI CTRYAG 5 cut(s) 201, 621, 906, 1000, 1186
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 2 cut(s) 431, 549
BstX2I RGATCY 5 cut(s) 244, 495, 568, 914, 959
BstXI CCANNNNNNTGG 2 cut(s) 858, 956
BstYI RGATCY 5 cut(s) 244, 495, 568, 914, 959
BsuRI GGCC 3 cut(s) 629, 639, 1383
BtsCI GGATG 5 cut(s) 935, 1073, 1158, 1477, 1510
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 3 cut(s) 133, 783, 1414
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 1 cut(s) 77
CaiI CAGNNNCTG 1 cut(s) 1145
Cfr10I RCCGGY 1 cut(s) 1383
Cfr13I GGNCC 5 cut(s) 193, 329, 836, 1115, 1381
CseI GACGC 1 cut(s) 836
Csp6I GTAC 5 cut(s) 101, 185, 446, 513, 818
CviAII CATG 5 cut(s) 119, 275, 887, 950, 1488
CviQI GTAC 5 cut(s) 101, 185, 446, 513, 818
DdeI CTNAG 4 cut(s) 181, 509, 563, 1390
DpnI GATC 8 cut(s) 123, 246, 497, 570, 789, 916, 961, 1215
DpnII GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 114, 155
EarI CTCTTC 2 cut(s) 114, 155
EciI GGCGGA 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 380
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 4 cut(s) 193, 329, 836, 1115
Eco88I CYCGRG 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoRI GAATTC 3 cut(s) 145, 316, 1131
EcoRII CCWGG 2 cut(s) 634, 1342
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 5 cut(s) 122, 278, 890, 953, 1491
FaqI GGGAC 2 cut(s) 206, 931
FatI CATG 5 cut(s) 118, 274, 886, 949, 1487
FauI CCCGC 2 cut(s) 123, 271
Fnu4HI GCNGC 2 cut(s) 204, 640
FokI GGATG 5 cut(s) 922, 1060, 1145, 1484, 1517
Fsp4HI GCNGC 2 cut(s) 204, 640
FspBI CTAG 7 cut(s) 96, 188, 381, 1029, 1101, 1313, 1434
GluI GCNGC 2 cut(s) 204, 640
GsaI CCCAGC 2 cut(s) 488, 1558
GsuI CTGGAG 3 cut(s) 1350, 1390, 1426
HaeIII GGCC 3 cut(s) 629, 639, 1383
HapII CCGG 3 cut(s) 834, 1384, 1583
HgaI GACGC 1 cut(s) 836
Hin1II CATG 5 cut(s) 122, 278, 890, 953, 1491
HincII GTYRAC 2 cut(s) 301, 1513
HindII GTYRAC 2 cut(s) 301, 1513
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 5 cut(s) 29, 92, 1024, 1280, 1376
HpaII CCGG 3 cut(s) 834, 1384, 1583
HphI GGTGA 8 cut(s) 104, 166, 416, 797, 1044, 1074, 1369, 1407
Hpy166II GTNNAC 3 cut(s) 301, 851, 1513
Hpy188I TCNGA 8 cut(s) 12, 249, 525, 679, 1141, 1213, 1248, 1610
Hpy188III TCNNGA 7 cut(s) 209, 689, 1290, 1392, 1434, 1460, 1546
Hpy8I GTNNAC 3 cut(s) 301, 851, 1513
HpyAV CCTTC 5 cut(s) 114, 583, 705, 834, 1241
HpyCH4III ACNGT 3 cut(s) 197, 410, 1269
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 7 cut(s) 79, 203, 601, 926, 935, 1123, 1339
HpyF10VI GCNNNNNNNGC 3 cut(s) 932, 1419, 1588
HpyF3I CTNAG 4 cut(s) 181, 509, 563, 1390
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 5 cut(s) 122, 278, 890, 953, 1491
KpnI GGTACC 1 cut(s) 104
Kzo9I GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
LmnI GCTCC 2 cut(s) 622, 1445
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 4 cut(s) 588, 944, 1076, 1167
MaeI CTAG 7 cut(s) 96, 188, 381, 1029, 1101, 1313, 1434
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 164, 404, 655
MalI GATC 8 cut(s) 123, 246, 497, 570, 789, 916, 961, 1215
MboI GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
MboII GAAGA 6 cut(s) 56, 101, 172, 282, 436, 549
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 5 cut(s) 244, 495, 568, 914, 959
MhlI GDGCHC 1 cut(s) 460
MlyI GAGTC 2 cut(s) 1018, 1289
MmeI TCCRAC 2 cut(s) 892, 937
MroXI GAANNNNTTC 1 cut(s) 1135
MslI CAYNNNNRTG 2 cut(s) 117, 234
MspA1I CMGCKG 1 cut(s) 858
MspI CCGG 3 cut(s) 834, 1384, 1583
MspR9I CCNGG 2 cut(s) 636, 1344
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 2 cut(s) 636, 1344
MwoI GCNNNNNNNGC 3 cut(s) 932, 1419, 1588
NdeII GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
NlaIII CATG 5 cut(s) 122, 278, 890, 953, 1491
NlaIV GGNNCC 3 cut(s) 102, 194, 246
NmuCI GTSAC 3 cut(s) 164, 404, 655
PaqCI CACCTGC 1 cut(s) 931
PdmI GAANNNNTTC 1 cut(s) 1135
PfeI GAWTC 3 cut(s) 29, 92, 1376
PflMI CCANNNNNTGG 1 cut(s) 1424
PkrI GCNGC 2 cut(s) 205, 641
PleI GAGTC 2 cut(s) 1018, 1288
PpsI GAGTC 2 cut(s) 1018, 1288
Ppu21I YACGTR 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 634, 1342
PspFI CCCAGC 2 cut(s) 484, 1554
PspGI CCWGG 2 cut(s) 634, 1342
PspN4I GGNNCC 3 cut(s) 102, 194, 246
PspPI GGNCC 5 cut(s) 193, 329, 836, 1115, 1381
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 5 cut(s) 244, 495, 568, 914, 959
PvuII CAGCTG 1 cut(s) 858
RsaI GTAC 5 cut(s) 102, 186, 447, 514, 819
RsaNI GTAC 5 cut(s) 101, 185, 446, 513, 818
RseI CAYNNNNRTG 2 cut(s) 117, 234
SatI GCNGC 2 cut(s) 204, 640
Sau3AI GATC 8 cut(s) 121, 244, 495, 568, 787, 914, 959, 1213
Sau96I GGNCC 5 cut(s) 193, 329, 836, 1115, 1381
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 2 cut(s) 1018, 1289
ScrFI CCNGG 2 cut(s) 636, 1344
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 4 cut(s) 588, 944, 1076, 1167
SfcI CTRYAG 5 cut(s) 201, 621, 906, 1000, 1186
SinI GGWCC 4 cut(s) 193, 329, 836, 1115
SmiMI CAYNNNNRTG 2 cut(s) 117, 234
SmlI CTYRAG 4 cut(s) 209, 577, 689, 757
SmoI CTYRAG 4 cut(s) 209, 577, 689, 757
SsiI CCGC 4 cut(s) 116, 278, 584, 640
SspMI CTAG 7 cut(s) 96, 188, 381, 1029, 1101, 1313, 1434
StyD4I CCNGG 2 cut(s) 634, 1342
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 3 cut(s) 197, 410, 1269
TaiI ACGT 1 cut(s) 457
TaqI TCGA 2 cut(s) 258, 1497
TatI WGTACW 4 cut(s) 184, 445, 512, 817
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 3 cut(s) 29, 92, 1376
TscAI CASTG 3 cut(s) 133, 783, 1414
TseFI GTSAC 3 cut(s) 164, 404, 655
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 3 cut(s) 164, 404, 655
TspDTI ATGAA 8 cut(s) 129, 263, 282, 387, 456, 816, 1278, 1587
TspRI CASTG 3 cut(s) 133, 783, 1414
Van91I CCANNNNNTGG 1 cut(s) 1424
VpaK11BI GGWCC 4 cut(s) 193, 329, 836, 1115
XagI CCTNNNNNAGG 1 cut(s) 577
XapI RAATTY 5 cut(s) 145, 214, 316, 1131, 1225
XbaI TCTAGA 1 cut(s) 1433
XmaJI CCTAGG 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 1135
XspI CTAG 7 cut(s) 96, 188, 381, 1029, 1101, 1313, 1434
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.