Rroxscaffold_5G00339750

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014182
Physical Location & Seq
Reverse (-)
8164020 .. 8168083
4064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339750.1

Sequence Viewer

Length: 2439 bp
ATGGGCCACCATGCTCGCCGTGACTCTCTCTGCGGCTCCCTACTAGCTCCTAGGCCCGACTACCACGACTCCGACCCCGACCTCGTCTGGCCCTTCTGCAAGCTCGATGGCATAGACCGTGACGATATCCGCGAGACTGCCTACGAGATCTTCTTCACAGCCTGCCGTTCTTCCCCGGGTTTCGGGGGCCGAAACGCCCTCGTGTTTTATTCCAACCACGAGAATGCTAGCGGGGAAGGCGGTGGGTCTGGGGCGGGGCCGAAGCCAAGCGGGGTGGTCACCACCCCGATCAGCCGGATAAAGAGGGCTCTTGGGCTAAAGATGCTCAAGCGCTCTCCGTCGAGGAGGATGAGTAGTGGTGGACGTTCAAGCCCGTCGTCTCCGAACGCGGCTTCAACTATGGAAAGAGACGAGACTTTAGTCCTCGACGAGGTGGACGAGCTTCTCGAGCTGATGAAGAAGACTTGGTCCACTTTGGGGATCACTAGGCCGATTCACAATGTCTGTTTCACGTGGGTTTTGTTCCAGCAGTATGTTTCGACGGCGCAGATTGAGCCGGACTTGTTGTGTGCGGCGCACGCAATGTTGGCGGAGGTGGCCAACAATGCCAAGAGGCCTGACCGTGAGGCTATATATGTTAAGATCTTGTCGGCGGTTTTAAGCTCCATGCAGGCGTGGGCGGAGAAGAAACTGCTTCGGTATCATGAGTATTTTCAGAGAGGGACAGTTGGACAGATTGAAAACCTTCTTCCTCTAGCCTTGTCATCATCCAAGATTTTGGGTGAAGATGTTTCCATCACAGATGGGGCAGGGGATGGGAAAGGTGATACTACGTTGGTGGATAACTCCGGTGATCGTGTTGATTACTACATTCGATCTTCCATGAAACAAGCTTTCGCAAAGATCATAGAAGCTGGGAATGTCACCGAGGTGAAAGAGGAGGCAGTGACTGAAGCTTTACTTCAATTGGCCAAAGACACAGAAGATTTAGCCTGTAAAGAGAGGGAGAGCTTCAGTCCCATACTAAAGAGATGGCACACAACAGCGGCGGGGATTGCAGCCGTGACGCTGCACAACTGTTATGGAGCTGTGTTAAAGCAATACTTGAATGGAGTGTCCACACTTACAGCAGACACAGTTGAGATACTGCAGAGGGCAGGAAAGCTAGAGAAGGTTCTGCTCCAAATGGTGGTGGAGGACTCTGCTGAATGCGAAGATGGGGGAAAGCGATTAATGAAGAGAGGGAAAGAGTGTGTCAACAGAGCAAAAGAGAGCGAGACATGGAATCCAAAGTCTAAATCAGAGCCATATGCACAATCAGCTGAGGAGCTAATGAAATTGGCAAAGGAAATTGTGGACGAGTTCTTTGAAATCCCAATTGGAATTACAGAAGATTTAGTTCAAGATCTTGCTGATGGTATGGAACATCTCTTCAAGGAGTACACCGCATTTGTTGCTTCTTGCGGTTCCAAACAGAGTTATATTCCTACACTTCCTCCTTTGACAAGATGCAACCGAGACTCAAAGATCCTCAAGCTGTGGAAAAAGGCTAGCCCTTGTAGTATTGGAGCTGATGACTTCCACCCAAATGGAACAAATGAAGGTCACCATCCTCGACCTTCAACAAGCCGAGGAACACAACGCCTATATATTCGCCTCAACACCTTGCACTATCTTCTCTCCCACCTTCATTCTCTTGACAAAAACCTTTCTCTCTCCCCTCGAATCATTCCTTCAACACCACGCAGCCGCTATGCCAACAACCGGAGGGCCAACAATTCCTCATACTTCGAAATCACCCATGCATCAATCCAAGCAGCATGCCAACATGTCTCAGAAGTAGCTGCTTATCGCTTAATCTTCCTCGACTCCAACTCTGTCTTCTATGAAAGTCTCTATGTTGGTGATGTAGCCAATGCAAGAATTAGACCTGCATTGCGAATTCTCAAGCAGAATCTTACTCTTCTGGGTGCAATTCTCACTGATAGAGCACAGGCATTGGCAATAAGAGAAGTAATGAGGACATCTTTTGAGGCATTCCTTATGGTTTTGGTTGCTGGGGGAAGCTCCCGGGTGTTTTATCGGAGTGATCATGAGATGATCGAGGAGGATTTTGATAGCCTAAAACGCGTATTTTGCTCTCATGGAGAAGGATTAATAGCCAAGGATGTGGTGGAACATGAGGCGGAGACAGCGGAAGGGGTGATTGATTTGATGGGCCAGTGCACTGAACAACTTATGGAAGATTTCAGCATTGTGACTTGTGAAACAAGTGGGATAGGAGTTGTTGGTTCGGGGCAAAGGCTGCCAATGCCTCCAACAACAGGAAGGTGGAATAGATCAGATCCAAATACTATATTGAGGGTCTTGTGCCACAGGAATGACAAAGCAGCAAACCAATTCTTAAAGAGAACATTCCAGTTAGCAAAGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

812

Amino Acids

90.15

Weight (kDa)

6.64

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PATROL1 PF25761 412 - 812 1.5e-180 PATROL1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04470 AT2G33420
fragaria_vesca FvH4_4g04280 FvH4_4g04280
malus_domestica MD13G1219000.v1.1 MD16G1224300.v1.1
prunus_persica Prupe.1G045700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0394731
rosa_laevigata RLG00000009667
rosa_multiflora Rmu_sc0005356.1_g000011
rosa_roxburghii Rroxscaffold_5G00339750
rosa_rugosa Rorug03G0362100.1
rosa_samantha Rh4AG054800 Rh4BG052500 Rh4CG059300 Rh4DG051100
rosa_wichuraiana Rw4G004370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1939
AccB7I CCANNNNNTGG 1 cut(s) 1189
AccII CGCG 3 cut(s) 132, 389, 2130
AclWI GGATC 3 cut(s) 488, 1522, 2339
AcoI YGGCCR 2 cut(s) 597, 969
AcsI RAATTY 1 cut(s) 1941
AcuI CTGAAG 2 cut(s) 972, 997
AcvI CACGTG 1 cut(s) 513
AfaI GTAC 1 cut(s) 1442
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 6 cut(s) 182, 430, 477, 1189, 1764, 2324
AflIII ACRYGT 2 cut(s) 1828, 2128
AjuI GAANNNNNNNTTGG 4 cut(s) 1362, 1394, 1865, 1897
AleI CACNNNNGTG 1 cut(s) 929
Alw21I GWGCWC 2 cut(s) 1993, 2228
Alw26I GTCTC 9 cut(s) 128, 384, 402, 407, 1271, 1512, 1837, 1898, 2183
Alw44I GTGCAC 1 cut(s) 2224
AlwI GGATC 3 cut(s) 488, 1522, 2339
AlwNI CAGNNNCTG 1 cut(s) 950
Ama87I CYCGRG 3 cut(s) 175, 446, 2070
Aor51HI AGCGCT 1 cut(s) 332
ApaLI GTGCAC 1 cut(s) 2224
ApeKI GCWGC 7 cut(s) 1058, 1069, 1746, 1817, 1844, 2305, 2390
ApoI RAATTY 1 cut(s) 1941
ArsI GACNNNNNNTTYG 2 cut(s) 1349, 1381
AseI ATTAAT 2 cut(s) 1232, 2156
Asp700I GAANNNNTTC 1 cut(s) 744
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 3 cut(s) 333, 547, 577
AspS9I GGNCC 8 cut(s) 4, 54, 90, 187, 257, 468, 1770, 2218
AsuC2I CCSGG 4 cut(s) 176, 177, 2071, 2072
AsuII TTCGAA 1 cut(s) 1791
AsuNHI GCTAGC 2 cut(s) 227, 1550
AvaI CYCGRG 3 cut(s) 175, 446, 2070
AvaII GGWCC 1 cut(s) 468
AvrII CCTAGG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 2228
BalI TGGCCA 2 cut(s) 599, 971
BanII GRGCYC 1 cut(s) 310
BauI CACGAG 2 cut(s) 200, 218
BbrPI CACGTG 1 cut(s) 513
BbsI GAAGAC 2 cut(s) 467, 1873
Bbv12I GWGCWC 2 cut(s) 1993, 2228
BbvCI CCTCAGC 1 cut(s) 1323
BbvI GCAGC 7 cut(s) 1056, 1070, 1758, 1829, 1831, 2292, 2402
BccI CCATC 9 cut(s) 101, 797, 803, 809, 1026, 1211, 1409, 1617, 2209
BceAI ACGGC 4 cut(s) 3, 150, 558, 1046
BclI TGATCA 1 cut(s) 2089
BcnI CCSGG 4 cut(s) 176, 177, 2071, 2072
BcoDI GTCTC 9 cut(s) 128, 384, 402, 407, 1271, 1512, 1837, 1898, 2183
BfaI CTAG 7 cut(s) 44, 51, 228, 486, 755, 1166, 1551
BfmI CTRYAG 1 cut(s) 1148
BfoI RGCGCY 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 1939
BglII AGATCT 3 cut(s) 147, 642, 1405
BlnI CCTAGG 1 cut(s) 50
Bme1390I CCNGG 4 cut(s) 176, 177, 2071, 2072
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 3 cut(s) 175, 446, 2070
BmgT120I GGNCC 8 cut(s) 4, 54, 90, 187, 257, 468, 1770, 2218
BmiI GGNNCC 4 cut(s) 37, 188, 258, 1468
BmrFI CCNGG 4 cut(s) 176, 177, 2071, 2072
BmsI GCATC 3 cut(s) 312, 1499, 1814
BmtI GCTAGC 2 cut(s) 231, 1554
BoxI GACNNNNGTC 1 cut(s) 419
BpiI GAAGAC 2 cut(s) 467, 1873
Bpu10I CCTNAGC 1 cut(s) 1323
Bpu14I TTCGAA 1 cut(s) 1791
BpuEI CTTGAG 3 cut(s) 311, 1517, 1931
BpuMI CCSGG 4 cut(s) 176, 177, 2071, 2072
BsaAI YACGTR 1 cut(s) 513
BsaJI CCNNGG 7 cut(s) 50, 174, 175, 927, 1630, 2070, 2163
BsaWI WCCGGW 2 cut(s) 848, 1764
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 337, 367, 1480, 1510
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 430, 477, 1189, 1764, 2324
Bse1I ACTGG 2 cut(s) 2221, 2419
Bse3DI GCAATG 2 cut(s) 588, 1934
BseDI CCNNGG 7 cut(s) 50, 174, 175, 927, 1630, 2070, 2163
BseGI GGATG 5 cut(s) 354, 767, 820, 1609, 2173
BseLI CCNNNNNNNGG 6 cut(s) 182, 430, 477, 1189, 1764, 2324
BseMI GCAATG 2 cut(s) 588, 1934
BseMII CTCAG 2 cut(s) 1314, 1848
BseNI ACTGG 2 cut(s) 2221, 2419
BseRI GAGGAG 4 cut(s) 358, 953, 1340, 2120
BseSI GKGCMC 1 cut(s) 2228
BseXI GCAGC 7 cut(s) 1056, 1070, 1758, 1829, 1831, 2292, 2402
BseYI CCCAGC 2 cut(s) 914, 2057
BsgI GTGCAG 1 cut(s) 1055
Bsh1236I CGCG 3 cut(s) 132, 389, 2130
BsiHKAI GWGCWC 2 cut(s) 1993, 2228
BsiHKCI CYCGRG 3 cut(s) 175, 446, 2070
BsiSI CCGG 6 cut(s) 176, 295, 557, 849, 1765, 2071
BslFI GGGAC 2 cut(s) 736, 1002
BslI CCNNNNNNNGG 6 cut(s) 182, 430, 477, 1189, 1764, 2324
BsmAI GTCTC 9 cut(s) 128, 384, 402, 407, 1271, 1512, 1837, 1898, 2183
BsmBI CGTCTC 2 cut(s) 384, 402
BsmFI GGGAC 2 cut(s) 736, 1002
BsmI GAATGC 3 cut(s) 229, 1214, 2036
BsoBI CYCGRG 3 cut(s) 175, 446, 2070
Bsp119I TTCGAA 1 cut(s) 1791
Bsp1286I GDGCHC 3 cut(s) 310, 1993, 2228
BspCNI CTCAG 2 cut(s) 1315, 1847
BspFNI CGCG 3 cut(s) 132, 389, 2130
BspHI TCATGA 2 cut(s) 703, 2092
BspLI GGNNCC 4 cut(s) 37, 188, 258, 1468
BspMAI CTGCAG 1 cut(s) 1152
BspMI ACCTGC 1 cut(s) 1939
BspOI GCTAGC 2 cut(s) 231, 1554
BspPI GGATC 3 cut(s) 488, 1522, 2339
BspT104I TTCGAA 1 cut(s) 1791
BsrDI GCAATG 2 cut(s) 588, 1934
BsrI ACTGG 2 cut(s) 2221, 2419
BssECI CCNNGG 7 cut(s) 50, 174, 175, 927, 1630, 2070, 2163
BssSI CACGAG 2 cut(s) 200, 218
BssT1I CCWWGG 2 cut(s) 50, 2163
Bst2BI CACGAG 2 cut(s) 200, 218
Bst4CI ACNGT 5 cut(s) 119, 623, 727, 1079, 1138
Bst6I CTCTTC 3 cut(s) 1232, 1436, 1968
BstAPI GCANNNNNTGC 2 cut(s) 1454, 2305
BstBAI YACGTR 1 cut(s) 513
BstBI TTCGAA 1 cut(s) 1791
BstC8I GCNNGC 8 cut(s) 16, 101, 163, 229, 579, 672, 1552, 1822
BstDEI CTNAG 2 cut(s) 1323, 1834
BstEII GGTNACC 2 cut(s) 277, 1604
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 5 cut(s) 354, 767, 820, 1609, 2173
BstFNI CGCG 3 cut(s) 132, 389, 2130
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 3 cut(s) 333, 547, 577
BstMAI GTCTC 9 cut(s) 128, 384, 402, 407, 1271, 1512, 1837, 1898, 2183
BstNSI RCATGY 2 cut(s) 1824, 1832
BstPAI GACNNNNGTC 1 cut(s) 419
BstPI GGTNACC 2 cut(s) 277, 1604
BstSCI CCNGG 4 cut(s) 174, 175, 2069, 2070
BstSFI CTRYAG 1 cut(s) 1148
BstSLI GKGCMC 1 cut(s) 2228
BstUI CGCG 3 cut(s) 132, 389, 2130
BstV1I GCAGC 7 cut(s) 1056, 1070, 1758, 1829, 1831, 2292, 2402
BstV2I GAAGAC 2 cut(s) 467, 1873
BstX2I RGATCY 5 cut(s) 147, 642, 1405, 1527, 2344
BstXI CCANNNNNNTGG 3 cut(s) 778, 1589, 2170
BstYI RGATCY 5 cut(s) 147, 642, 1405, 1527, 2344
BtsCI GGATG 5 cut(s) 354, 767, 820, 1609, 2173
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 4 cut(s) 951, 1980, 2226, 2228
BveI ACCTGC 1 cut(s) 1939
Cac8I GCNNGC 8 cut(s) 16, 101, 163, 229, 579, 672, 1552, 1822
CaiI CAGNNNCTG 1 cut(s) 950
CciI TCATGA 2 cut(s) 703, 2092
CfoI GCGC 3 cut(s) 333, 547, 577
Cfr13I GGNCC 8 cut(s) 4, 54, 90, 187, 257, 468, 1770, 2218
Cfr9I CCCGGG 2 cut(s) 175, 2070
CseI GACGC 1 cut(s) 1075
Csp6I GTAC 1 cut(s) 1441
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviQI GTAC 1 cut(s) 1441
DdeI CTNAG 2 cut(s) 1323, 1834
EaeI YGGCCR 2 cut(s) 597, 969
Eam1104I CTCTTC 3 cut(s) 1232, 1436, 1968
EarI CTCTTC 3 cut(s) 1232, 1436, 1968
EciI GGCGGA 3 cut(s) 605, 695, 2201
Eco130I CCWWGG 2 cut(s) 50, 2163
Eco147I AGGCCT 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 310
Eco32I GATATC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 468
Eco47III AGCGCT 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 972, 997
Eco72I CACGTG 1 cut(s) 513
Eco88I CYCGRG 3 cut(s) 175, 446, 2070
Eco91I GGTNACC 2 cut(s) 277, 1604
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO65I GGTNACC 2 cut(s) 277, 1604
EcoRI GAATTC 1 cut(s) 1941
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 2 cut(s) 50, 2163
EcoT22I ATGCAT 1 cut(s) 1807
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 50, 2163
Esp3I CGTCTC 2 cut(s) 384, 402
FalI AAGNNNNNCTT 4 cut(s) 945, 977, 1088, 1120
FaqI GGGAC 2 cut(s) 736, 1002
FauI CCCGC 4 cut(s) 224, 247, 263, 1042
FauNDI CATATG 1 cut(s) 1309
FbaI TGATCA 1 cut(s) 2089
FokI GGATG 5 cut(s) 361, 754, 827, 1596, 2180
FriOI GRGCYC 1 cut(s) 310
FspBI CTAG 7 cut(s) 44, 51, 228, 486, 755, 1166, 1551
GlaI GCGC 3 cut(s) 332, 546, 576
GsaI CCCAGC 2 cut(s) 918, 2061
HaeII RGCGCY 1 cut(s) 334
HapII CCGG 6 cut(s) 176, 295, 557, 849, 1765, 2071
HgaI GACGC 1 cut(s) 1075
HhaI GCGC 3 cut(s) 333, 547, 577
Hin6I GCGC 3 cut(s) 331, 545, 575
HinP1I GCGC 3 cut(s) 331, 545, 575
HincII GTYRAC 1 cut(s) 1258
HindII GTYRAC 1 cut(s) 1258
HindIII AAGCTT 2 cut(s) 891, 954
HinfI GANTC 9 cut(s) 23, 68, 493, 1199, 1285, 1520, 1725, 1868, 1954
HpaII CCGG 6 cut(s) 176, 295, 557, 849, 1765, 2071
Hpy166II GTNNAC 8 cut(s) 362, 436, 471, 1119, 1258, 1357, 1443, 2226
Hpy188I TCNGA 7 cut(s) 73, 384, 717, 1303, 1837, 2085, 2344
Hpy188III TCNNGA 5 cut(s) 446, 704, 1403, 1697, 2093
Hpy8I GTNNAC 8 cut(s) 362, 436, 471, 1119, 1258, 1357, 1443, 2226
Hpy99I CGWCG 4 cut(s) 343, 379, 431, 544
HpyCH4III ACNGT 5 cut(s) 119, 623, 727, 1079, 1138
HpyCH4IV ACGT 3 cut(s) 364, 512, 833
HpyF3I CTNAG 2 cut(s) 1323, 1834
HpySE526I ACGT 3 cut(s) 364, 512, 833
HspAI GCGC 3 cut(s) 331, 545, 575
Ksp22I TGATCA 1 cut(s) 2089
LmnI GCTCC 8 cut(s) 41, 52, 668, 1085, 1185, 1327, 1568, 2072
Lsp1109I GCAGC 7 cut(s) 1056, 1070, 1758, 1829, 1831, 2292, 2402
LweI GCATC 3 cut(s) 312, 1499, 1814
MaeI CTAG 7 cut(s) 44, 51, 228, 486, 755, 1166, 1551
MaeII ACGT 3 cut(s) 364, 512, 833
MaeIII GTNAC 8 cut(s) 20, 119, 277, 922, 946, 1063, 1604, 2257
MfeI CAATTG 2 cut(s) 965, 1377
MflI RGATCY 5 cut(s) 147, 642, 1405, 1527, 2344
MhlI GDGCHC 3 cut(s) 310, 1993, 2228
MlsI TGGCCA 2 cut(s) 599, 971
MluI ACGCGT 1 cut(s) 2128
MluNI TGGCCA 2 cut(s) 599, 971
MlyI GAGTC 5 cut(s) 17, 62, 1193, 1514, 1862
MmeI TCCRAC 5 cut(s) 96, 237, 709, 1896, 2342
Mox20I TGGCCA 2 cut(s) 599, 971
Mph1103I ATGCAT 1 cut(s) 1807
MroXI GAANNNNTTC 1 cut(s) 744
MscI TGGCCA 2 cut(s) 599, 971
MseI TTAA 7 cut(s) 639, 659, 1094, 1232, 1856, 2156, 2405
MslI CAYNNNNRTG 4 cut(s) 222, 929, 1587, 2379
Msp20I TGGCCA 2 cut(s) 599, 971
MspA1I CMGCKG 3 cut(s) 1046, 1322, 2195
MspI CCGG 6 cut(s) 176, 295, 557, 849, 1765, 2071
MspR9I CCNGG 4 cut(s) 176, 177, 2071, 2072
MunI CAATTG 2 cut(s) 965, 1377
Mva1269I GAATGC 3 cut(s) 229, 1214, 2036
MvnI CGCG 3 cut(s) 132, 389, 2130
NciI CCSGG 4 cut(s) 176, 177, 2071, 2072
NdeI CATATG 1 cut(s) 1309
NheI GCTAGC 2 cut(s) 227, 1550
NlaIV GGNNCC 4 cut(s) 37, 188, 258, 1468
NmeAIII GCCGAG 1 cut(s) 1655
NmuCI GTSAC 8 cut(s) 20, 119, 277, 922, 946, 1063, 1604, 2257
NsiI ATGCAT 1 cut(s) 1807
NspI RCATGY 2 cut(s) 1824, 1832
NspV TTCGAA 1 cut(s) 1791
OliI CACNNNNGTG 1 cut(s) 929
PaeI GCATGC 1 cut(s) 1824
PaeR7I CTCGAG 1 cut(s) 446
PagI TCATGA 2 cut(s) 703, 2092
PceI AGGCCT 1 cut(s) 616
PciI ACATGT 1 cut(s) 1828
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 435, 444
PctI GAATGC 3 cut(s) 229, 1214, 2036
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 4 cut(s) 493, 1285, 1725, 1954
PflFI GACNNNGTC 2 cut(s) 83, 466
PflMI CCANNNNNTGG 1 cut(s) 1189
PleI GAGTC 5 cut(s) 17, 62, 1193, 1514, 1862
PmaCI CACGTG 1 cut(s) 513
PmlI CACGTG 1 cut(s) 513
PpsI GAGTC 5 cut(s) 17, 62, 1193, 1514, 1862
Ppu21I YACGTR 1 cut(s) 513
PscI ACATGT 1 cut(s) 1828
PshAI GACNNNNGTC 1 cut(s) 419
PshBI ATTAAT 2 cut(s) 1232, 2156
PspCI CACGTG 1 cut(s) 513
PspEI GGTNACC 2 cut(s) 277, 1604
PspFI CCCAGC 2 cut(s) 914, 2057
PspN4I GGNNCC 4 cut(s) 37, 188, 258, 1468
PspPI GGNCC 8 cut(s) 4, 54, 90, 187, 257, 468, 1770, 2218
PstI CTGCAG 1 cut(s) 1152
PstNI CAGNNNCTG 1 cut(s) 950
PsuI RGATCY 5 cut(s) 147, 642, 1405, 1527, 2344
PsyI GACNNNGTC 2 cut(s) 83, 466
PvuII CAGCTG 1 cut(s) 1322
RsaI GTAC 1 cut(s) 1442
RsaNI GTAC 1 cut(s) 1441
RseI CAYNNNNRTG 4 cut(s) 222, 929, 1587, 2379
SaqAI TTAA 7 cut(s) 639, 659, 1094, 1232, 1856, 2156, 2405
Sau96I GGNCC 8 cut(s) 4, 54, 90, 187, 257, 468, 1770, 2218
SchI GAGTC 5 cut(s) 17, 62, 1193, 1514, 1862
ScrFI CCNGG 4 cut(s) 176, 177, 2071, 2072
SduI GDGCHC 3 cut(s) 310, 1993, 2228
SfaNI GCATC 3 cut(s) 312, 1499, 1814
SfcI CTRYAG 1 cut(s) 1148
Sfr274I CTCGAG 1 cut(s) 446
SfuI TTCGAA 1 cut(s) 1791
SinI GGWCC 1 cut(s) 468
SlaI CTCGAG 1 cut(s) 446
SmaI CCCGGG 2 cut(s) 177, 2072
SmiMI CAYNNNNRTG 4 cut(s) 222, 929, 1587, 2379
SmlI CTYRAG 4 cut(s) 326, 446, 1532, 1946
SmoI CTYRAG 4 cut(s) 326, 446, 1532, 1946
SphI GCATGC 1 cut(s) 1824
SseBI AGGCCT 1 cut(s) 616
SspMI CTAG 7 cut(s) 44, 51, 228, 486, 755, 1166, 1551
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 4 cut(s) 174, 175, 2069, 2070
StyI CCWWGG 2 cut(s) 50, 2163
TaaI ACNGT 5 cut(s) 119, 623, 727, 1079, 1138
TaiI ACGT 3 cut(s) 367, 515, 836
TatI WGTACW 1 cut(s) 1440
TauI GCSGC 5 cut(s) 36, 392, 575, 1049, 1752
TfiI GAWTC 4 cut(s) 493, 1285, 1725, 1954
Tru1I TTAA 7 cut(s) 639, 659, 1094, 1232, 1856, 2156, 2405
Tru9I TTAA 7 cut(s) 639, 659, 1094, 1232, 1856, 2156, 2405
TscAI CASTG 4 cut(s) 951, 1987, 2228, 2233
TseFI GTSAC 8 cut(s) 20, 119, 277, 922, 946, 1063, 1604, 2257
TseI GCWGC 7 cut(s) 1058, 1069, 1746, 1817, 1844, 2305, 2390
Tsp45I GTSAC 8 cut(s) 20, 119, 277, 922, 946, 1063, 1604, 2257
TspDTI ATGAA 7 cut(s) 470, 899, 1250, 1349, 1614, 1679, 1902
TspGWI ACGGA 1 cut(s) 327
TspMI CCCGGG 2 cut(s) 175, 2070
TspRI CASTG 4 cut(s) 951, 1987, 2228, 2233
Tth111I GACNNNGTC 2 cut(s) 83, 466
Van91I CCANNNNNTGG 1 cut(s) 1189
VneI GTGCAC 1 cut(s) 2224
VpaK11BI GGWCC 1 cut(s) 468
VspI ATTAAT 2 cut(s) 1232, 2156
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 1 cut(s) 1941
XceI RCATGY 2 cut(s) 1824, 1832
XcmI CCANNNNNNNNNTGG 1 cut(s) 2170
XhoI CTCGAG 1 cut(s) 446
XmaI CCCGGG 2 cut(s) 175, 2070
XmaJI CCTAGG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 7 cut(s) 44, 51, 228, 486, 755, 1166, 1551
Zsp2I ATGCAT 1 cut(s) 1807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.