Rroxscaffold_5G00342660

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018174
Physical Location & Seq
Reverse (-)
11773073 .. 11777322
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342660.1

Sequence Viewer

Length: 660 bp
ATGTCCCGAGGGTCAAACACCTGTTCCCCCCCTTTCGTTCTCCTTCTTCAGTTCTTCCTTTTATGTTCTCCACTTCTCCTTCTTCCTCCACTCCCATGGCTCCTCACCCCGACCAACTTGACCATCCCCAAACCTCATTCCTCCTCCTTCTTAATCCTCAACCCCTTCTCCACTCCCTATCTCCGGTTTCCAATCACCACCACCGCCTTCCCCACCCTCTCGATCAAAGGCTACGCCGCGGAACGAGACCCCTCCGTACTTGTCTCCGGCATGTTTCCGGCAATGGAAAATCCTCCTCCTGGATTTTGGCGATATTGCATACGATGTCAAACCGGAGGAGGTGTGCGTATACCTGCTAAAGATTACCAGGCCTTTGATTCAAGGACTTCGGTTGCAGAGAAAATCATGAATGAACTGAGACAATCCGAGACCGACATGATTGGGGTGTACGGTATTGGGGGCGTGGGGAAGACAACACTTGCTAAAGAAGTTTATCGGCAAGCTATAGAAGATAAAACGTTATTCGATGAAGTTGTTATGGTACTAGATGTGAAAAAGAATCCAAATTTGGAAGAAATTCAAAAAAGAATTGATGAAAAGTTGGGAATGGAATTTACGGGAGATGAGACTATAGACGAAGAGCTGGTCGTCTTTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

219

Amino Acids

24.47

Weight (kDa)

5.17

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 131 - 212 7.3e-13 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 349
AccII CGCG 1 cut(s) 239
AciI CCGC 3 cut(s) 204, 237, 239
AclI AACGTT 1 cut(s) 518
AcsI RAATTY 3 cut(s) 565, 576, 611
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 3 cut(s) 258, 449, 543
AfiI CCNNNNNNNGG 2 cut(s) 183, 299
AgsI TTSAA 2 cut(s) 381, 581
AjnI CCWGG 2 cut(s) 298, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 2 cut(s) 503, 643
AluI AGCT 2 cut(s) 503, 643
Alw26I GTCTC 5 cut(s) 240, 268, 412, 422, 620
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 1 cut(s) 369
ApoI RAATTY 3 cut(s) 565, 576, 611
ArsI GACNNNNNNTTYG 1 cut(s) 630
Asp700I GAANNNNTTC 1 cut(s) 576
AsuHPI GGTGA 2 cut(s) 97, 187
AvaI CYCGRG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 476
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 300, 368
BcoDI GTCTC 5 cut(s) 240, 268, 412, 422, 620
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 2 cut(s) 504, 630
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 300, 368
BmeT110I CYCGRG 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 300, 368
BpiI GAAGAC 1 cut(s) 476
BsaI GGTCTC 2 cut(s) 240, 422
BsaJI CCNNGG 3 cut(s) 7, 95, 237
BsaWI WCCGGW 2 cut(s) 183, 332
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 327, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 299
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 300, 368
BseDI CCNNGG 3 cut(s) 7, 95, 237
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 183, 299
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 407
BseRI GAGGAG 4 cut(s) 92, 133, 285, 351
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 4 cut(s) 184, 267, 278, 333
BslI CCNNNNNNNGG 2 cut(s) 183, 299
BsmAI GTCTC 5 cut(s) 240, 268, 412, 422, 620
BsnI GGCC 1 cut(s) 371
Bso31I GGTCTC 2 cut(s) 240, 422
BsoBI CYCGRG 1 cut(s) 6
Bsp143I GATC 1 cut(s) 222
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 3 cut(s) 204, 237, 239
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 408
BspFNI CGCG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 101
BspMI ACCTGC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 633
BspTNI GGTCTC 2 cut(s) 240, 422
BsrDI GCAATG 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 7, 95, 237
BssMI GATC 1 cut(s) 222
BssNAI GTATAC 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 95
Bst1107I GTATAC 1 cut(s) 350
Bst2UI CCWGG 2 cut(s) 300, 368
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 633
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 416
BstDSI CCRYGG 2 cut(s) 95, 237
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 239
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 5 cut(s) 240, 268, 412, 422, 620
BstMBI GATC 1 cut(s) 222
BstNI CCWGG 2 cut(s) 300, 368
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 298, 366
BstSFI CTRYAG 2 cut(s) 504, 630
BstUI CGCG 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 96
BstZ17I GTATAC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 2 cut(s) 95, 237
BtsCI GGATG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 501
CciI TCATGA 1 cut(s) 405
Cfr42I CCGCGG 1 cut(s) 240
Csp6I GTAC 3 cut(s) 257, 448, 542
CviAII CATG 4 cut(s) 96, 271, 406, 436
CviJI RGCY 5 cut(s) 100, 231, 371, 503, 643
CviKI_1 RGCY 5 cut(s) 100, 231, 371, 503, 643
CviQI GTAC 3 cut(s) 257, 448, 542
DdeI CTNAG 1 cut(s) 416
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 371
Eco31I GGTCTC 2 cut(s) 240, 422
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 298, 366
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 4 cut(s) 99, 274, 409, 439
FatI CATG 4 cut(s) 95, 270, 405, 435
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 545
GluI GCNGC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 371
HapII CCGG 4 cut(s) 184, 267, 278, 333
Hin1II CATG 4 cut(s) 99, 274, 409, 439
HinfI GANTC 2 cut(s) 377, 559
HpaII CCGG 4 cut(s) 184, 267, 278, 333
HphI GGTGA 2 cut(s) 97, 187
Hpy166II GTNNAC 2 cut(s) 350, 448
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 3 cut(s) 6, 220, 406
Hpy8I GTNNAC 2 cut(s) 350, 448
HpyAV CCTTC 5 cut(s) 53, 89, 157, 175, 217
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 2 cut(s) 318, 395
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 4 cut(s) 99, 274, 409, 439
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 1 cut(s) 222
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 1 cut(s) 105
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 518
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 7 cut(s) 38, 46, 74, 481, 521, 584, 650
MluCI AATT 4 cut(s) 565, 576, 588, 611
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 4 cut(s) 184, 267, 278, 333
MspR9I CCNGG 2 cut(s) 300, 368
MvaI CCWGG 2 cut(s) 300, 368
MvnI CGCG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 95
NdeII GATC 1 cut(s) 222
NlaIII CATG 4 cut(s) 99, 274, 409, 439
NlaIV GGNNCC 1 cut(s) 101
NspI RCATGY 1 cut(s) 274
PagI TCATGA 1 cut(s) 405
PceI AGGCCT 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 377, 559
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 1 cut(s) 238
Psp1406I AACGTT 1 cut(s) 518
Psp6I CCWGG 2 cut(s) 298, 366
PspGI CCWGG 2 cut(s) 298, 366
PspN4I GGNNCC 1 cut(s) 101
RsaI GTAC 3 cut(s) 258, 449, 543
RsaNI GTAC 3 cut(s) 257, 448, 542
RseI CAYNNNNRTG 1 cut(s) 94
SacII CCGCGG 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 300, 368
SetI ASST 7 cut(s) 23, 136, 343, 355, 505, 521, 645
SfcI CTRYAG 2 cut(s) 504, 630
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 94
Sse9I AATT 4 cut(s) 565, 576, 588, 611
SseBI AGGCCT 1 cut(s) 371
SsiI CCGC 3 cut(s) 204, 237, 239
SspMI CTAG 1 cut(s) 545
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 298, 366
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 452
TaiI ACGT 1 cut(s) 521
TaqI TCGA 2 cut(s) 221, 525
TaqII GACCGA 1 cut(s) 446
TasI AATT 4 cut(s) 565, 576, 588, 611
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 2 cut(s) 377, 559
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 422, 426, 543, 609
TspGWI ACGGA 1 cut(s) 244
XapI RAATTY 3 cut(s) 565, 576, 611
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.