Rh3BG284600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018174
Physical Location & Seq
Forward (+)
28267388 .. 28267669
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG284600.1

Sequence Viewer

Length: 282 bp
ATGGATTATGAGCCCTTTGAAACGTGGATTTCATTTGATAAAATCATGGAGAAATGTATTTGGTTGTATGGAATAGGTGGTGTGGGGAAGAAGACACTCGTCAAAAAAGTTTATCAGGAAGCTACAAAAGATGGGAAAATTCTTGGCGATGTGGTTTTAGTACTAGATGTGAAACAAAATCCAGACCTGGAAAGAATTCAGAAAGAAATTTGTGAAACAAACGGGCTGGATGCTGAGGACAGTGAGAGCACAGTCAGTTTGAAAAGGTGTTCGTCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

93

Amino Acids

10.55

Weight (kDa)

4.8

Isoelectric Point (pI)

23.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 19 - 83 5.4e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 138, 195, 207
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 2 cut(s) 20, 262
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 251
ApoI RAATTY 3 cut(s) 138, 195, 207
Asp700I GAANNNNTTC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 188
BfaI CTAG 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 234
BseBI CCWGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 15, 251
BspCNI CTCAG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 242, 253
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 235
BstNI CCWGG 1 cut(s) 188
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 247
Csp6I GTAC 1 cut(s) 161
CviAII CATG 1 cut(s) 46
CviJI RGCY 3 cut(s) 13, 122, 226
CviKI_1 RGCY 3 cut(s) 13, 122, 226
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 9, 47, 69, 278
FatI CATG 1 cut(s) 45
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 15
FspBI CTAG 1 cut(s) 164
Hin1II CATG 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 116, 182
HpyCH4III ACNGT 2 cut(s) 242, 253
HpyCH4IV ACGT 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 5 cut(s) 101, 173, 195, 200, 212
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 23
MboII GAAGA 2 cut(s) 100, 103
MhlI GDGCHC 2 cut(s) 15, 251
MluCI AATT 3 cut(s) 138, 195, 207
MnlI CCTC 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
NlaIII CATG 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 195
PshAI GACNNNNGTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
ScaI AGTACT 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 2 cut(s) 15, 251
SetI ASST 5 cut(s) 26, 79, 124, 189, 269
SfaNI GCATC 1 cut(s) 220
Sse9I AATT 3 cut(s) 138, 195, 207
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 242, 253
TaiI ACGT 1 cut(s) 26
TasI AATT 3 cut(s) 138, 195, 207
TatI WGTACW 1 cut(s) 160
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 247
XapI RAATTY 3 cut(s) 138, 195, 207
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.