Rh3CG282400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018174
Physical Location & Seq
Forward (+)
28427060 .. 28427341
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG282400.1

Sequence Viewer

Length: 282 bp
ATGGATTATGAGCCCTTTGAAACGTGGATTTCATTTGATAAAATCATGGAGAAATGTATTTGGTTGTATGGAATAGGAGGTGTGGGGAAGAAGACACTCGTCAAAAAAGTTTATCGGCAAGCTACAAAAGATAGGAAAATTCTTGACGATGTGGTTTTACTACTAGATGTGAAACAAAATTCAGACTTGGAAAGAATTCAGAAAGAAATTTTTGAAACACCCGGTCTGGGTGCTGAGAAAAGTGAGAGCACAGTCAAGTTGAAGAGGTGTTCGTCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

93

Amino Acids

10.76

Weight (kDa)

8.53

Isoelectric Point (pI)

19.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 19 - 76 2.3e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 138, 178, 195, 207
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 3 cut(s) 20, 215, 262
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 251
ApoI RAATTY 4 cut(s) 138, 178, 195, 207
Asp700I GAANNNNTTC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 222
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 222
BfaI CTAG 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 222
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 15, 251
BspCNI CTCAG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 234
BstPAI GACNNNNGTC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 120
CviAII CATG 1 cut(s) 46
CviJI RGCY 2 cut(s) 13, 122
CviKI_1 RGCY 2 cut(s) 13, 122
DdeI CTNAG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 9, 47, 69, 278
FatI CATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 15
FspBI CTAG 1 cut(s) 164
HapII CCGG 1 cut(s) 222
Hin1II CATG 1 cut(s) 49
HpaII CCGG 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 184, 201
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 2 cut(s) 212, 235
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 23
MboII GAAGA 3 cut(s) 100, 103, 274
MhlI GDGCHC 2 cut(s) 15, 251
MluCI AATT 4 cut(s) 138, 178, 195, 207
MnlI CCTC 2 cut(s) 71, 258
MroXI GAANNNNTTC 1 cut(s) 195
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 222
NciI CCSGG 1 cut(s) 222
NlaIII CATG 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 195
PshAI GACNNNNGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 2 cut(s) 15, 251
SetI ASST 4 cut(s) 26, 82, 124, 269
Sse9I AATT 4 cut(s) 138, 178, 195, 207
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 26
TasI AATT 4 cut(s) 138, 178, 195, 207
TspDTI ATGAA 1 cut(s) 21
XapI RAATTY 4 cut(s) 138, 178, 195, 207
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.