Rroxscaffold_6G00399040

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018174
Physical Location & Seq
Reverse (-)
20947718 .. 20949657
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399040.1

Sequence Viewer

Length: 300 bp
ATGTTCCCCAGAAAAGAAATGGATTATGAGCCCTTTGAAACGTGGATTTCATTTGATAAAATCATGGAGAAATGTATTTGGTTGTATGGAATAGGTGGTGTGGGGAAGAAGACACTCGTCAAAAAAGTTTATCAGGAAGCTACAAAAGATGGGAAAATTCTTGGCGATATGGTTTTAGTACTAGATGTGAAACAAAATCCAGACCTGGAAAGAATTCAGAAAGAAATTTGCGAAACAAACGGGTTGGATGCTGAGGACAGTGAGAGCACAGTCAGTTTGAAAAGGTGTTCGTCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

99

Amino Acids

11.37

Weight (kDa)

5.01

Isoelectric Point (pI)

23.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 24 - 89 9.6e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 156, 213, 225
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 2 cut(s) 38, 280
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 269
ApoI RAATTY 3 cut(s) 156, 213, 225
Asp700I GAANNNNTTC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 206
BfaI CTAG 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 33, 269
BspCNI CTCAG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 260, 271
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 253
BstNI CCWGG 1 cut(s) 206
BstPAI GACNNNNGTC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 265
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 64
CviJI RGCY 2 cut(s) 31, 140
CviKI_1 RGCY 2 cut(s) 31, 140
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 1 cut(s) 67
FaiI YATR 5 cut(s) 27, 65, 87, 170, 296
FatI CATG 1 cut(s) 63
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 33
FspBI CTAG 1 cut(s) 182
Hin1II CATG 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 134, 200
HpyCH4III ACNGT 2 cut(s) 260, 271
HpyCH4IV ACGT 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 67
LpnPI CCDG 5 cut(s) 22, 119, 191, 213, 218
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 41
MboII GAAGA 2 cut(s) 118, 121
MhlI GDGCHC 2 cut(s) 33, 269
MluCI AATT 3 cut(s) 156, 213, 225
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
NlaIII CATG 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
ScaI AGTACT 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 2 cut(s) 33, 269
SetI ASST 5 cut(s) 44, 97, 142, 207, 287
SfaNI GCATC 1 cut(s) 238
Sse9I AATT 3 cut(s) 156, 213, 225
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 260, 271
TaiI ACGT 1 cut(s) 44
TasI AATT 3 cut(s) 156, 213, 225
TatI WGTACW 1 cut(s) 178
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 1 cut(s) 265
XapI RAATTY 3 cut(s) 156, 213, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.