Rh3CG282600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018174
Physical Location & Seq
Forward (+)
28432476 .. 28434935
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG282600.1

Sequence Viewer

Length: 264 bp
ATGATGCACGAAATCATCAAAATTGGCAAGTTCCCCGAAAGAGAAATGGATTATGAGCCCTTTGAAACGTGGATTTCATTTTATAAGATCATGGAGAGATGCATTGGGTTGTATGGAATAGGTGGTGTGGGGAAGAAGACACTCGTCAAAGAAGTTTATAGGCAAGCTACAAAAGATAAGAATGTTTTTGACGATGTGGTTTTAGTACTATGTGGTGTTGACAATGAGAGCACAGCCAGCCTAAAGAGCACTTCATCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

87

Amino Acids

9.95

Weight (kDa)

5.79

Isoelectric Point (pI)

22.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 34 - 72 7.9e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AfaI GTAC 1 cut(s) 207
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw21I GWGCWC 2 cut(s) 233, 251
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 233, 251
BmcAI AGTACT 1 cut(s) 207
BmsI GCATC 1 cut(s) 89
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 143
BsiHKAI GWGCWC 2 cut(s) 233, 251
Bsp1286I GDGCHC 3 cut(s) 60, 233, 251
Bsp143I GATC 1 cut(s) 87
BssMI GATC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 165, 238
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 237, 246
BstPAI GACNNNNGTC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 165, 238
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 58, 167, 236, 240
CviKI_1 RGCY 4 cut(s) 58, 167, 236, 240
CviQI GTAC 1 cut(s) 206
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 1 cut(s) 94
FaiI YATR 7 cut(s) 54, 84, 92, 114, 159, 211, 260
FatI CATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 94
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 7, 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 246
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 1 cut(s) 250
LweI GCATC 1 cut(s) 89
MaeII ACGT 1 cut(s) 68
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 145, 148
MhlI GDGCHC 3 cut(s) 60, 233, 251
MluCI AATT 1 cut(s) 21
Mph1103I ATGCAT 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 237, 246
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 104
PshAI GACNNNNGTC 1 cut(s) 143
PsiI TTATAA 1 cut(s) 84
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 259
Sau3AI GATC 1 cut(s) 87
ScaI AGTACT 1 cut(s) 207
SduI GDGCHC 3 cut(s) 60, 233, 251
SetI ASST 3 cut(s) 71, 124, 169
SfaNI GCATC 1 cut(s) 89
SgeI CNNG 8 cut(s) 20, 40, 47, 81, 103, 155, 176, 249
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 1 cut(s) 21
TaiI ACGT 1 cut(s) 71
TasI AATT 1 cut(s) 21
TatI WGTACW 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 66, 243
ZrmI AGTACT 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.