Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004587

Physical Location & Seq

Genomic Coordinates Reverse (-)

58433520 .. 58439597

Gene Structure 6078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCGTGATAAAGATGGGAAATATAGTCTTATGTTTGAGGAGTGGGTGACAGATAATCCATTTGTTATATCACCAAGAATAACTTTTGAGGTCAGTGTGCGTCTTCTTGGTGGACTAATGGCTCTGGGATACACAATTGCTACTATCCTTAAAAGAAGCAGTCATGTATTCTTCAATGATGGTGTCTGTGTAAAAATTGATTGGCTGGAGCAACTCAATCGTCGATATATTCAGGTGCAGGGAAAAGATCGAGTAGTTGTAAGATGTGTTGCAGAGCAGCTTGGCTTGGAAGGTTCATACATTCCTCGTACCTACATTGAACAAATTCAACTGGAAAAGCTCGTGAATGAGGTCATGGCCTTGCCAGATGATTTAAAGACAAGGCTTAGCATAGATGAGGATCTTGTTTTGAGCCCCAGAGACGCACTTTCTAAAGTCTCTGCAGCTGTCATGAGAAATAAGCATCTCAAGAGACCTGAGTCTATTCTGGACAGTGGTATGTCACAGTCCTATACAAACCAAAGGGACAAAAGTACTTCCAGGCTCACTGGATATTCTTCCAACGGTCAAAGGTTTGAAGATAGAAATTCAGAATCACAAGCAACACTAGCAAGCCAGGTAGAGGAGTGGGTCTTAATGGGAGTCATTACTCAGCTATCAGAGCATATATCTTCACTGAATGATAGGATGGATGAGTTTACAAACCGAATTGAAGAGCTGAATTCCAAGTTGACTGTGAAGAAAAGTTCTAGCCAACAAAACATGGCTCTTCAAGCTGAAGCCTGCAATGGCTCCACTCCCACATATAATTTCATCTCTAGCTTGGGCAATGGATCTTTAACTGGCTCCATAATGCCTCATTCGTCATCTTCTGCCCAGTTGGCTAAGGAGTCTCCTGCACTGGAAGAGGTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

305

Amino Acids

34.2

Weight (kDa)

5.56

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYTH	PF01928	1 - 105	3.8e-10	CYTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190
fragaria_vesca	FvH4_4g28680
malus_domestica	MD13G1052900.v1.1 MD16G1051900.v1.1
prunus_persica	Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1
pyrus_communis	pycom13g04740 pycom16g04560
rosa_chinensis	RchiOBHm_Chr4g0436791
rosa_multiflora	Rmu_sc0001837.1_g000006
rosa_roxburghii	Rroxscaffold_1G00000940 Rroxscaffold_5G00377860
rosa_rugosa	Rorug04G0296100 Rorug04G0296200 Rorug04G0296300
rosa_samantha	Rh4AG350600 Rh4BG359500 Rh4CG373800
rosa_wichuraiana	Rw4G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	408, 841
AcsI	RAATTY	3 cut(s)	324, 586, 721
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	3 cut(s)	310, 535, 912
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	6 cut(s)	175, 320, 329, 578, 713, 773
AjnI	CCWGG	2 cut(s)	539, 615
AluBI	AGCT	7 cut(s)	280, 340, 446, 655, 718, 776, 822
AluI	AGCT	7 cut(s)	280, 340, 446, 655, 718, 776, 822
Alw26I	GTCTC	4 cut(s)	414, 442, 466, 897
AlwI	GGATC	2 cut(s)	408, 841
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	277, 443
ApoI	RAATTY	3 cut(s)	324, 586, 721
Asp700I	GAANNNNTTC	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	58, 63
BanII	GRGCYC	1 cut(s)	416
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	289, 455
BccI	CCATC	3 cut(s)	8, 173, 682
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	2 cut(s)	541, 617
BciVI	GTATCC	1 cut(s)	122
BcoDI	GTCTC	4 cut(s)	414, 442, 466, 897
BfaI	CTAG	3 cut(s)	608, 750, 819
BfmI	CTRYAG	2 cut(s)	441, 914
BfuI	GTATCC	1 cut(s)	122
BglI	GCCNNNNNGGC	1 cut(s)	881
BisI	GCNGC	2 cut(s)	278, 444
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	2 cut(s)	279, 445
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	541, 617
BmiI	GGNNCC	2 cut(s)	793, 847
BmrFI	CCNGG	2 cut(s)	541, 617
BmrI	ACTGGG	1 cut(s)	871
BmsI	GCATC	1 cut(s)	472
BmuI	ACTGGG	1 cut(s)	871
BoxI	GACNNNNGTC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	5 cut(s)	336, 553, 847, 877, 906
Bse3DI	GCAATG	2 cut(s)	793, 835
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	541, 617
BseGI	GGATG	2 cut(s)	693, 697
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	2 cut(s)	793, 835
BseMII	CTCAG	2 cut(s)	468, 665
BseNI	ACTGG	5 cut(s)	336, 553, 847, 877, 906
BseRI	GAGGAG	2 cut(s)	53, 638
BseXI	GCAGC	2 cut(s)	289, 455
BsgI	GTGCAG	2 cut(s)	257, 882
BshFI	GGCC	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	4 cut(s)	414, 442, 466, 897
BsmBI	CGTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	247, 400, 833
Bsp1720I	GCTNAGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	469, 664
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	793, 847
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	2 cut(s)	408, 841
BspQI	GCTCTTC	2 cut(s)	708, 774
BspTNI	GGTCTC	1 cut(s)	466
BsrDI	GCAATG	2 cut(s)	793, 835
BsrI	ACTGG	5 cut(s)	336, 553, 847, 877, 906
BssMI	GATC	3 cut(s)	247, 400, 833
BssSI	CACGAG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	541, 617
Bst4CI	ACNGT	4 cut(s)	494, 507, 566, 736
Bst6I	CTCTTC	3 cut(s)	708, 774, 900
BstC8I	GCNNGC	2 cut(s)	613, 784
BstDEI	CTNAG	4 cut(s)	386, 477, 651, 885
BstF5I	GGATG	2 cut(s)	693, 697
BstKTI	GATC	3 cut(s)	250, 403, 836
BstMAI	GTCTC	4 cut(s)	414, 442, 466, 897
BstMBI	GATC	3 cut(s)	247, 400, 833
BstMWI	GCNNNNNNNGC	4 cut(s)	608, 661, 773, 881
BstNI	CCWGG	2 cut(s)	541, 617
BstPAI	GACNNNNGTC	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	539, 615
BstSFI	CTRYAG	2 cut(s)	441, 914
BstV1I	GCAGC	2 cut(s)	289, 455
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	400, 833
BstYI	RGATCY	2 cut(s)	400, 833
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	693, 697
BtsIMutI	CAGTG	5 cut(s)	100, 499, 546, 674, 899
Cac8I	GCNNGC	2 cut(s)	613, 784
CciI	TCATGA	1 cut(s)	450
CseI	GACGC	2 cut(s)	89, 431
Csp6I	GTAC	3 cut(s)	309, 534, 911
CviAII	CATG	4 cut(s)	164, 355, 451, 763
CviQI	GTAC	3 cut(s)	309, 534, 911
DdeI	CTNAG	4 cut(s)	386, 477, 651, 885
DpnI	GATC	3 cut(s)	249, 402, 835
DpnII	GATC	3 cut(s)	247, 400, 833
DraI	TTTAAA	1 cut(s)	375
Eam1104I	CTCTTC	3 cut(s)	708, 774, 900
EarI	CTCTTC	3 cut(s)	708, 774, 900
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	539, 615
EcoT38I	GRGCYC	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	4 cut(s)	167, 358, 454, 766
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	4 cut(s)	163, 354, 450, 762
Fnu4HI	GCNGC	2 cut(s)	278, 444
FokI	GGATG	2 cut(s)	700, 704
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	278, 444
FspBI	CTAG	3 cut(s)	608, 750, 819
GluI	GCNGC	2 cut(s)	278, 444
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	359
HgaI	GACGC	2 cut(s)	89, 431
Hin1II	CATG	4 cut(s)	167, 358, 454, 766
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	4 cut(s)	479, 593, 642, 890
HphI	GGTGA	2 cut(s)	58, 63
Hpy166II	GTNNAC	3 cut(s)	113, 699, 732
Hpy188I	TCNGA	2 cut(s)	592, 661
Hpy188III	TCNNGA	4 cut(s)	343, 451, 469, 488
Hpy8I	GTNNAC	3 cut(s)	113, 699, 732
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	4 cut(s)	494, 507, 566, 736
HpyCH4V	TGCA	5 cut(s)	238, 272, 443, 786, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	608, 661, 773, 881
HpyF3I	CTNAG	4 cut(s)	386, 477, 651, 885
Hsp92II	CATG	4 cut(s)	167, 358, 454, 766
Kzo9I	GATC	3 cut(s)	247, 400, 833
LguI	GCTCTTC	2 cut(s)	708, 774
LmnI	GCTCC	3 cut(s)	208, 797, 851
Lsp1109I	GCAGC	2 cut(s)	289, 455
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	608, 750, 819
MaeIII	GTNAC	2 cut(s)	46, 501
MalI	GATC	3 cut(s)	249, 402, 835
MboI	GATC	3 cut(s)	247, 400, 833
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	400, 833
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	7 cut(s)	135, 195, 324, 586, 708, 721, 808
MlyI	GAGTC	3 cut(s)	488, 651, 899
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	8 cut(s)	31, 82, 315, 343, 391, 616, 867, 901
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	4 cut(s)	150, 374, 635, 839
MspA1I	CMGCKG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	541, 617
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	541, 617
MwoI	GCNNNNNNNGC	4 cut(s)	608, 661, 773, 881
NdeII	GATC	3 cut(s)	247, 400, 833
NlaIII	CATG	4 cut(s)	167, 358, 454, 766
NlaIV	GGNNCC	2 cut(s)	793, 847
NmuCI	GTSAC	2 cut(s)	46, 501
PagI	TCATGA	1 cut(s)	450
PciSI	GCTCTTC	2 cut(s)	708, 774
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	279, 445
PleI	GAGTC	3 cut(s)	487, 650, 898
PpsI	GAGTC	3 cut(s)	487, 650, 898
PshAI	GACNNNNGTC	1 cut(s)	478
Psp6I	CCWGG	2 cut(s)	539, 615
PspGI	CCWGG	2 cut(s)	539, 615
PspN4I	GGNNCC	2 cut(s)	793, 847
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	2 cut(s)	400, 833
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	3 cut(s)	310, 535, 912
RsaNI	GTAC	3 cut(s)	309, 534, 911
SapI	GCTCTTC	2 cut(s)	708, 774
SaqAI	TTAA	4 cut(s)	150, 374, 635, 839
SatI	GCNGC	2 cut(s)	278, 444
Sau3AI	GATC	3 cut(s)	247, 400, 833
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	3 cut(s)	488, 651, 899
ScrFI	CCNGG	2 cut(s)	541, 617
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	2 cut(s)	441, 914
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	7 cut(s)	135, 195, 324, 586, 708, 721, 808
SspMI	CTAG	3 cut(s)	608, 750, 819
StyD4I	CCNGG	2 cut(s)	539, 615
TaaI	ACNGT	4 cut(s)	494, 507, 566, 736
TaqI	TCGA	2 cut(s)	223, 250
TasI	AATT	7 cut(s)	135, 195, 324, 586, 708, 721, 808
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	4 cut(s)	150, 374, 635, 839
Tru9I	TTAA	4 cut(s)	150, 374, 635, 839
TscAI	CASTG	5 cut(s)	100, 499, 553, 681, 906
TseFI	GTSAC	2 cut(s)	46, 501
TseI	GCWGC	2 cut(s)	277, 443
Tsp45I	GTSAC	2 cut(s)	46, 501
TspDTI	ATGAA	2 cut(s)	285, 802
TspRI	CASTG	5 cut(s)	100, 499, 553, 681, 906
XapI	RAATTY	3 cut(s)	324, 586, 721
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	3 cut(s)	608, 750, 819
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.