Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004587

Physical Location & Seq

Genomic Coordinates Forward (+)

47046293 .. 47049894

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0296300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGGTCCGAAGAAATGGACAAGAACAAAAAGACTGTTAGAAGACAGTTATTGTCAAAATCGTAATAATGAAAGGGAAATGCAAGCAATTCCTATTTCTGATAGTGCTGAAGAGCAGGAAAGTCATTTTACCAGATCAAGCCGTGGCACATATTCGAAGACAAAATGGACAAGAACAAAAACATTGTTAGAAGACAGTCATTGTCAAAACGATAATGATGAAATAGAAATGCAAGGAATTCCTGTTTGTGATAGCAGTGAAGAACATGAAGTTCATTTTAGCAGATCAAGCCGTGGCATTCAGTTGGTGATGTCAGAAGAGAATCAATGTTTAAAACATCAGCAGAATTCCGAAAGTTATAGCACTACCAAATTTAACCATACTCCCAAGCGATTCAGAACTAGGGAACAAAGCTCAGGTGCAATTGCTAATTCAAGTTTGTCAGCTAATAGAATCTCAAATATGGAGAATCCAGGTACATCACAAGTTTTACAAAGCTCCAACAATTCTGAATTTGTAGAAACTGATGAAATTAGAGGTTTACATCTATTTGGTCAAGCTTCATACCAAAGAAGTAGAGCAGGATCTACAATCAGATATGAGGATTCAGGAGATGATATCCACACATGTAATTATTGCAACGCATGTTTCTGGTTTGGAGAAGCGAATAAACAATCGTCCTCAAGTGCGCCTCTAATCTATACAAATTGTTGCAAAAAAGGTCAAATCAAGCTTGAACCATCAAAATCAACACCAGAATTTCTTGAAAGATTATTGGATCCGAATAGGAGTTCTGAAAGCAGACTTTTTAGAGAGAATATCAGGATTTACAACTCGATGTTTTCTTTTACATCAATGGGGGCAACAATTGATCAAAAAATAAATACTGGATCAGGTCCTTATGTTTTTAAAATTAACGGTCAAGGAATCAAAGGAAATTCCACAGAAAAAAACATATCAATGCGAGCTTACATTACATATCAAATTCAAGACAGAAATAATGAAAGAAGGACGACGCAAAGGTTGACTTTTGATACGTTGGGATTCTCCGAAAACTTCCTTCACGAAAGTTGTAGAGCGCGTCGATACGAGTTCGTGGACATGTGGAACGAGAAAATCGGAGTTCAATTGCGACTGACCCGACCCGAACCCGGTGATCCGACCCGGATTTTCCGGCGATCTCCGGCGACCTCTAGCCTCGAAACCTGCACAGAACGGTTCGCCTCTCTCGTCCGGTCGTCTCTGTGGCAGCCTCTTGTGGCGATTCGTGGTGGAGGAAGTGCAGCAAGGTGGTGCAGCCTAGTGTTTTCGAACCCGACCGGAAAACACAGTTCCGGCGACGTCAAGGCTTCAGGCTTCCATCCTTGGGTTCGTGGGAGGCTCCTTGATCGATCTATGGTGTTTGTTTCGATCGGTTTACGTGGAAATCGGTTCAACTCAGTTGGGATTACTGTTCACGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

488

Amino Acids

55.51

Weight (kDa)

9.07

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190
fragaria_vesca	FvH4_4g28680
malus_domestica	MD13G1052900.v1.1 MD16G1051900.v1.1
prunus_persica	Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1
pyrus_communis	pycom13g04740 pycom16g04560
rosa_chinensis	RchiOBHm_Chr4g0436791
rosa_multiflora	Rmu_sc0001837.1_g000006
rosa_roxburghii	Rroxscaffold_1G00000940 Rroxscaffold_5G00377860
rosa_rugosa	Rorug04G0296100 Rorug04G0296200 Rorug04G0296300
rosa_samantha	Rh4AG350600 Rh4BG359500 Rh4CG373800
rosa_wichuraiana	Rw4G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1344
Acc36I	ACCTGC	1 cut(s)	1214
AccII	CGCG	1 cut(s)	1081
AclWI	GGATC	5 cut(s)	592, 773, 786, 898, 1151
AcsI	RAATTY	7 cut(s)	237, 346, 371, 512, 758, 937, 984
AcuI	CTGAAG	2 cut(s)	129, 1335
AcyI	GRCGYC	1 cut(s)	1341
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	2 cut(s)	1151, 1366
AflIII	ACRYGT	2 cut(s)	626, 1101
AgsI	TTSAA	6 cut(s)	435, 737, 767, 989, 1127, 1435
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	6 cut(s)	414, 446, 498, 560, 733, 968
AluI	AGCT	6 cut(s)	414, 446, 498, 560, 733, 968
Alw26I	GTCTC	1 cut(s)	1245
AlwI	GGATC	5 cut(s)	592, 773, 786, 898, 1151
ApeKI	GCWGC	3 cut(s)	1249, 1283, 1296
ApoI	RAATTY	7 cut(s)	237, 346, 371, 512, 758, 937, 984
AspLEI	GCGC	2 cut(s)	691, 1081
AspS9I	GGNCC	2 cut(s)	5, 896
AsuC2I	CCSGG	2 cut(s)	1152, 1165
AsuHPI	GGTGA	2 cut(s)	319, 1166
AsuII	TTCGAA	2 cut(s)	155, 1310
AvaII	GGWCC	2 cut(s)	5, 896
BamHI	GGATCC	1 cut(s)	778
BbsI	GAAGAC	3 cut(s)	48, 164, 198
BbvI	GCAGC	3 cut(s)	1261, 1295, 1308
BccI	CCATC	2 cut(s)	748, 1368
BceAI	ACGGC	2 cut(s)	126, 276
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	2 cut(s)	1152, 1165
BcoDI	GTCTC	1 cut(s)	1245
BfaI	CTAG	3 cut(s)	402, 1194, 1301
BfuAI	ACCTGC	1 cut(s)	1214
BisI	GCNGC	3 cut(s)	1250, 1284, 1297
BlsI	GCNGC	3 cut(s)	1251, 1285, 1298
Bme1390I	CCNGG	3 cut(s)	474, 1152, 1165
Bme18I	GGWCC	2 cut(s)	5, 896
BmgT120I	GGNCC	2 cut(s)	5, 896
BmiI	GGNNCC	3 cut(s)	6, 780, 1382
BmrFI	CCNGG	3 cut(s)	474, 1152, 1165
BpiI	GAAGAC	3 cut(s)	48, 164, 198
Bpu10I	CCTNAGC	1 cut(s)	415
Bpu14I	TTCGAA	2 cut(s)	155, 1310
BpuEI	CTTGAG	1 cut(s)	667
BpuMI	CCSGG	2 cut(s)	1152, 1165
Bsa29I	ATCGAT	1 cut(s)	1390
BsaAI	YACGTR	1 cut(s)	1421
BsaHI	GRCGYC	1 cut(s)	1341
BsaJI	CCNNGG	3 cut(s)	142, 292, 1364
BsaWI	WCCGGW	2 cut(s)	1233, 1319
Bsc4I	CCNNNNNNNGG	2 cut(s)	1151, 1366
Bse1I	ACTGG	1 cut(s)	892
BseBI	CCWGG	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	1390
BseDI	CCNNGG	3 cut(s)	142, 292, 1364
BseGI	GGATG	1 cut(s)	1360
BseLI	CCNNNNNNNGG	2 cut(s)	1151, 1366
BseMII	CTCAG	2 cut(s)	429, 1452
BseNI	ACTGG	1 cut(s)	892
BseXI	GCAGC	3 cut(s)	1261, 1295, 1308
BsgI	GTGCAG	3 cut(s)	1192, 1302, 1315
Bsh1236I	CGCG	1 cut(s)	1081
Bsh1285I	CGRYCG	3 cut(s)	1238, 1320, 1413
BshVI	ATCGAT	1 cut(s)	1390
BsiEI	CGRYCG	3 cut(s)	1238, 1320, 1413
BsiSI	CCGG	7 cut(s)	1152, 1165, 1174, 1184, 1234, 1320, 1335
BslI	CCNNNNNNNGG	2 cut(s)	1151, 1366
BsmAI	GTCTC	1 cut(s)	1245
BsmBI	CGTCTC	1 cut(s)	1245
BsmI	GAATGC	1 cut(s)	297
Bsp119I	TTCGAA	2 cut(s)	155, 1310
BspCNI	CTCAG	2 cut(s)	428, 1451
BspDI	ATCGAT	1 cut(s)	1390
BspFNI	CGCG	1 cut(s)	1081
BspLI	GGNNCC	3 cut(s)	6, 780, 1382
BspMI	ACCTGC	1 cut(s)	1214
BspPI	GGATC	5 cut(s)	592, 773, 786, 898, 1151
BspQI	GCTCTTC	1 cut(s)	105
BspT104I	TTCGAA	2 cut(s)	155, 1310
BsrI	ACTGG	1 cut(s)	892
BssECI	CCNNGG	3 cut(s)	142, 292, 1364
BssNI	GRCGYC	1 cut(s)	1341
BssT1I	CCWWGG	1 cut(s)	1364
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	7 cut(s)	36, 47, 197, 920, 1218, 1331, 1453
Bst6I	CTCTTC	2 cut(s)	105, 312
BstACI	GRCGYC	1 cut(s)	1341
BstBAI	YACGTR	1 cut(s)	1421
BstBI	TTCGAA	2 cut(s)	155, 1310
BstC8I	GCNNGC	2 cut(s)	84, 966
BstDEI	CTNAG	2 cut(s)	415, 1438
BstDSI	CCRYGG	2 cut(s)	142, 292
BstF5I	GGATG	1 cut(s)	1360
BstFNI	CGCG	1 cut(s)	1081
BstHHI	GCGC	2 cut(s)	691, 1081
BstMAI	GTCTC	1 cut(s)	1245
BstMCI	CGRYCG	3 cut(s)	1238, 1320, 1413
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	3 cut(s)	630, 648, 1105
BstSCI	CCNGG	3 cut(s)	472, 1150, 1163
BstUI	CGCG	1 cut(s)	1081
BstV1I	GCAGC	3 cut(s)	1261, 1295, 1308
BstV2I	GAAGAC	3 cut(s)	48, 164, 198
BstX2I	RGATCY	2 cut(s)	584, 778
BstYI	RGATCY	2 cut(s)	584, 778
Bsu15I	ATCGAT	1 cut(s)	1390
BsuTUI	ATCGAT	1 cut(s)	1390
BtgI	CCRYGG	2 cut(s)	142, 292
BtsCI	GGATG	1 cut(s)	1360
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	1214
Cac8I	GCNNGC	2 cut(s)	84, 966
CfoI	GCGC	2 cut(s)	691, 1081
Cfr13I	GGNCC	2 cut(s)	5, 896
ClaI	ATCGAT	1 cut(s)	1390
CseI	GACGC	2 cut(s)	1024, 1070
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	4 cut(s)	266, 627, 645, 1102
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	2 cut(s)	415, 1438
DraI	TTTAAA	2 cut(s)	333, 910
Eam1104I	CTCTTC	2 cut(s)	105, 312
EarI	CTCTTC	2 cut(s)	105, 312
Eco130I	CCWWGG	1 cut(s)	1364
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	2 cut(s)	5, 896
Eco57I	CTGAAG	2 cut(s)	129, 1335
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRI	GAATTC	2 cut(s)	237, 346
EcoRII	CCWGG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	1364
ErhI	CCWWGG	1 cut(s)	1364
Esp3I	CGTCTC	1 cut(s)	1245
FaeI	CATG	4 cut(s)	269, 630, 648, 1105
FalI	AAGNNNNNCTT	2 cut(s)	1012, 1044
FatI	CATG	4 cut(s)	265, 626, 644, 1101
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	3 cut(s)	1250, 1284, 1297
FokI	GGATG	1 cut(s)	1347
Fsp4HI	GCNGC	3 cut(s)	1250, 1284, 1297
FspBI	CTAG	3 cut(s)	402, 1194, 1301
GlaI	GCGC	2 cut(s)	690, 1080
GluI	GCNGC	3 cut(s)	1250, 1284, 1297
HapII	CCGG	7 cut(s)	1152, 1165, 1174, 1184, 1234, 1320, 1335
HgaI	GACGC	2 cut(s)	1024, 1070
HhaI	GCGC	2 cut(s)	691, 1081
Hin1I	GRCGYC	1 cut(s)	1341
Hin1II	CATG	4 cut(s)	269, 630, 648, 1105
Hin6I	GCGC	2 cut(s)	689, 1079
HinP1I	GCGC	2 cut(s)	689, 1079
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	2 cut(s)	558, 731
HinfI	GANTC	8 cut(s)	322, 393, 453, 469, 605, 927, 1044, 1264
HpaII	CCGG	7 cut(s)	1152, 1165, 1174, 1184, 1234, 1320, 1335
HphI	GGTGA	2 cut(s)	319, 1166
Hpy166II	GTNNAC	5 cut(s)	542, 1026, 1099, 1418, 1456
Hpy188III	TCNNGA	5 cut(s)	609, 764, 823, 989, 1064
Hpy8I	GTNNAC	5 cut(s)	542, 1026, 1099, 1418, 1456
Hpy99I	CGWCG	3 cut(s)	1018, 1086, 1343
HpyAV	CCTTC	2 cut(s)	1002, 1070
HpyCH4III	ACNGT	7 cut(s)	36, 47, 197, 920, 1218, 1331, 1453
HpyCH4IV	ACGT	3 cut(s)	1037, 1341, 1420
HpyCH4V	TGCA	8 cut(s)	82, 232, 422, 639, 714, 1209, 1283, 1296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	2 cut(s)	415, 1438
HpySE526I	ACGT	3 cut(s)	1037, 1341, 1420
Hsp92I	GRCGYC	1 cut(s)	1341
Hsp92II	CATG	4 cut(s)	269, 630, 648, 1105
HspAI	GCGC	2 cut(s)	689, 1079
Ksp22I	TGATCA	1 cut(s)	871
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	503, 1386
Lsp1109I	GCAGC	3 cut(s)	1261, 1295, 1308
MaeI	CTAG	3 cut(s)	402, 1194, 1301
MaeII	ACGT	3 cut(s)	1037, 1341, 1420
MboII	GAAGA	7 cut(s)	22, 53, 122, 169, 203, 272, 329
MfeI	CAATTG	3 cut(s)	423, 867, 1127
MflI	RGATCY	2 cut(s)	584, 778
MmeI	TCCRAC	2 cut(s)	525, 1184
MseI	TTAA	4 cut(s)	332, 375, 909, 915
MslI	CAYNNNNRTG	1 cut(s)	959
MspI	CCGG	7 cut(s)	1152, 1165, 1174, 1184, 1234, 1320, 1335
MspR9I	CCNGG	3 cut(s)	474, 1152, 1165
MunI	CAATTG	3 cut(s)	423, 867, 1127
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	1081
MwoI	GCNNNNNNNGC	1 cut(s)	288
NciI	CCSGG	2 cut(s)	1152, 1165
NlaIII	CATG	4 cut(s)	269, 630, 648, 1105
NlaIV	GGNNCC	3 cut(s)	6, 780, 1382
NspI	RCATGY	3 cut(s)	630, 648, 1105
NspV	TTCGAA	2 cut(s)	155, 1310
PciI	ACATGT	2 cut(s)	626, 1101
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	1227
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	8 cut(s)	322, 393, 453, 469, 605, 927, 1044, 1264
PkrI	GCNGC	3 cut(s)	1251, 1285, 1298
Ple19I	CGATCG	1 cut(s)	1413
Ppu21I	YACGTR	1 cut(s)	1421
PpuMI	RGGWCCY	1 cut(s)	896
PscI	ACATGT	2 cut(s)	626, 1101
Psp5II	RGGWCCY	1 cut(s)	896
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	3 cut(s)	6, 780, 1382
PspPI	GGNCC	2 cut(s)	5, 896
PspPPI	RGGWCCY	1 cut(s)	896
PsuI	RGATCY	2 cut(s)	584, 778
PvuI	CGATCG	1 cut(s)	1413
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	959
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	332, 375, 909, 915
SatI	GCNGC	3 cut(s)	1250, 1284, 1297
Sau96I	GGNCC	2 cut(s)	5, 896
ScrFI	CCNGG	3 cut(s)	474, 1152, 1165
SfuI	TTCGAA	2 cut(s)	155, 1310
SinI	GGWCC	2 cut(s)	5, 896
SmiMI	CAYNNNNRTG	1 cut(s)	959
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SspMI	CTAG	3 cut(s)	402, 1194, 1301
StyD4I	CCNGG	3 cut(s)	472, 1150, 1163
StyI	CCWWGG	1 cut(s)	1364
TaaI	ACNGT	7 cut(s)	36, 47, 197, 920, 1218, 1331, 1453
TaiI	ACGT	3 cut(s)	1040, 1344, 1423
TaqI	TCGA	7 cut(s)	155, 836, 1084, 1200, 1310, 1390, 1409
TfiI	GAWTC	8 cut(s)	322, 393, 453, 469, 605, 927, 1044, 1264
Tru1I	TTAA	4 cut(s)	332, 375, 909, 915
Tru9I	TTAA	4 cut(s)	332, 375, 909, 915
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	3 cut(s)	1249, 1283, 1296
TspDTI	ATGAA	7 cut(s)	84, 234, 263, 282, 543, 552, 1017
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	5, 896
XapI	RAATTY	7 cut(s)	237, 346, 371, 512, 758, 937, 984
XceI	RCATGY	3 cut(s)	630, 648, 1105
XspI	CTAG	3 cut(s)	402, 1194, 1301
ZraI	GACGTC	1 cut(s)	1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.