Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004587

Physical Location & Seq

Genomic Coordinates Forward (+)

46992206 .. 46992526

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTGGATGTGGTTAAGGCAAAAGCAATTATCGGTCAAAACAAAGCACAAGAATTGCTTAAGCAGAGCCCAGGAGATCTACGCTTAAAAGCTTGTTCAGGTGACTATGATAGGATATCAAATCATCATGTCCCAAATGCTTTACTGGCATTTAAGAAAGATGCCCCGGACATTGCTGAAGAAGAAATGAGTGAAGTTGCTGAAGAGGCAAGGGCATGTGAGTCTAGTTTTTCAGGGGGTTCTCCTCTGACAGATGTGAATAATGTTTTAGCAGATGTTGCGACTATTACTGCAGCTATAGCAAAGGAATTAGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

106

Amino Acids

11.21

Weight (kDa)

4.79

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190
fragaria_vesca	FvH4_4g28680
malus_domestica	MD13G1052900.v1.1 MD16G1051900.v1.1
prunus_persica	Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1
pyrus_communis	pycom13g04740 pycom16g04560
rosa_chinensis	RchiOBHm_Chr4g0436791
rosa_multiflora	Rmu_sc0001837.1_g000006
rosa_roxburghii	Rroxscaffold_1G00000940 Rroxscaffold_5G00377860
rosa_rugosa	Rorug04G0296100 Rorug04G0296200 Rorug04G0296300
rosa_samantha	Rh4AG350600 Rh4BG359500 Rh4CG373800
rosa_wichuraiana	Rw4G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	198, 222
AflII	CTTAAG	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	2 cut(s)	92, 296
AluI	AGCT	2 cut(s)	92, 296
ApeKI	GCWGC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	291, 297
BfrI	CTTAAG	1 cut(s)	59
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	72, 167
BmrFI	CCNGG	2 cut(s)	72, 167
BmsI	GCATC	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	70, 165
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	70, 165
BseGI	GGATG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	295
BspTI	CTTAAG	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	70, 165
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 206, 278, 299
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	70, 165
BstSFI	CTRYAG	2 cut(s)	291, 297
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	13
CviAII	CATG	2 cut(s)	128, 216
CviJI	RGCY	3 cut(s)	69, 92, 296
CviKI_1	RGCY	3 cut(s)	69, 92, 296
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	198, 222
EcoRII	CCWGG	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	71
FaeI	CATG	2 cut(s)	131, 219
FaiI	YATR	4 cut(s)	108, 129, 217, 299
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	127, 215
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	294
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	2 cut(s)	131, 219
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 206, 278, 299
Hsp92II	CATG	2 cut(s)	131, 219
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	6 cut(s)	57, 84, 84, 131, 180, 219
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	191, 194, 215
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	27, 53, 308
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	199, 255
MseI	TTAA	4 cut(s)	15, 60, 86, 153
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	72, 167
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	146, 206, 278, 299
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	131, 219
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	76
SaqAI	TTAA	4 cut(s)	15, 60, 86, 153
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	72, 167
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	3 cut(s)	94, 103, 298
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	2 cut(s)	291, 297
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	27, 53, 308
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	70, 165
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	27, 53, 308
Tru1I	TTAA	4 cut(s)	15, 60, 86, 153
Tru9I	TTAA	4 cut(s)	15, 60, 86, 153
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	101
Vha464I	CTTAAG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.