Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004587

Physical Location & Seq

Genomic Coordinates Forward (+)

47036353 .. 47043109

Gene Structure 6757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGCAATCAGATGAAATTGCTTCAGCTATAACTTCTGAGGACCAACTCCTTAGCAGACGACTGCCTTTGTTATTTGTGATTTGGAGGAATACAAAGCACAAGTACAGGTTATATACAGGTTCCCGTTTCCCCCAGGTTGGTCTGTTTAAAGAATGTGGACAGTTTGCTTTATCAGATGCTTATAAACGTTCTTGTGGTCACTCATTGCAGAGTACTGCTGTTGCAAAGCAATGCCTGCTCCCGCCTTCACAGGGGAGATCAATTGCTATGAGGGAGCATGCTCATGTCATAAATTTCATTCCTGACTCTCCCAGGACCTTGAAGGTTCAACATAACGACCTTGAAGTCACAGACGAAGGTAGATGCCTGTTGGTTTCAACTTCTTTTGAGAGGAAACAATTTCAAAGAGATTTGTCCTCACTGGGAGATTTTATTGCATTTGAAGAAATGGCGAGAATTAAGCATGCAATATCAGGGACAGTGTGGAAGGAGATCAAGATCAGAAAAAGGAGAGGAAGAGAAAAGAAAGTCGTTATAGGCATAACCGTCGGGTTTGGAACTGAGTCGCTCACATCAAAAAAATATCTCGGCAACAATAGACCGGCTGGAAGTCTGTATAAAATGTCAAGCATTGAGATACAAAAGAGAAGATGGCAAATCAGTTTGCGTTCCTTTTGGAGAAGGAGTTTTGGTTGGAGTTTAAACTTTTTGGTGGTCAACTGGTCACAGAGTGCTGATCAAAATGAAAACTATGTCACAAGATCTGGAGTTGGAATTGCATTTTGCGGTCATGTCTCTATGAACATTGCTGGGCAATGCTTATGTGGAGTTGGAATTGCTTCTTTTTTTTTTGCTGAAAGTATTGAGAATGGTATTGGTGTTCTGAACAAAGACCTTCAATCCTCAAGTATGAAAGGGCTTCAGATTTGGAGCAGCAACTTGACTTTGAAGCACATAAGATCTAGAAAGTTATTGAATGCTTCCACATTATTGTACGAAATGTCGATGTGTGCTTCTTCAGACAGTTTTTCGGGCAGTTACTATGAGTACCTGACTCTGAGGCATGGTTTTATCTTGGAGGATTTGGCAAAGGACTGGAAACTGCACTCGAAGCATCTTTGTTGTACCTTACGATTTTCTGAGGAGGTGAAACTGGTCACCGGAGACCATAGAAAGAAGGTAAATTTAAATGTTGAAGAGCCTAACGTTAAAAAATTATATGAAGGCATAGATGGACGGGGAGATATGAAGCTCATTTATGGAACAAAGGATCTTGGAATCCAAGACAAAGGAAGAAGGGAAAACAGGGGGCTTATGACGAAGAAGAATCCACAGCAAAAGCATGAGTTGGCAGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

453

Amino Acids

51.49

Weight (kDa)

9.66

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190 AT1G26190
fragaria_vesca	FvH4_4g28680
malus_domestica	MD13G1052900.v1.1 MD16G1051900.v1.1
prunus_persica	Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1 Prupe.1G299100_v2.0.a1
pyrus_communis	pycom13g04740 pycom16g04560
rosa_chinensis	RchiOBHm_Chr4g0436791
rosa_multiflora	Rmu_sc0001837.1_g000006
rosa_roxburghii	Rroxscaffold_1G00000940 Rroxscaffold_5G00377860
rosa_rugosa	Rorug04G0296100 Rorug04G0296200 Rorug04G0296300
rosa_samantha	Rh4AG350600 Rh4BG359500 Rh4CG373800
rosa_wichuraiana	Rw4G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AasI	GACNNNNNNGTC	1 cut(s)	344
AciI	CCGC	2 cut(s)	242, 786
AclI	AACGTT	2 cut(s)	187, 1206
AclWI	GGATC	1 cut(s)	1278
AcsI	RAATTY	2 cut(s)	292, 1183
AcuI	CTGAAG	3 cut(s)	6, 905, 1002
AdeI	CACNNNGTG	1 cut(s)	731
AfaI	GTAC	5 cut(s)	104, 214, 995, 1049, 1126
AfiI	CCNNNNNNNGG	2 cut(s)	137, 251
AjnI	CCWGG	2 cut(s)	132, 311
AluBI	AGCT	2 cut(s)	26, 1252
AluI	AGCT	2 cut(s)	26, 1252
Alw26I	GTCTC	2 cut(s)	799, 1158
AlwI	GGATC	1 cut(s)	1278
ApeKI	GCWGC	2 cut(s)	933, 1352
ApoI	RAATTY	2 cut(s)	292, 1183
Asp700I	GAANNNNTTC	1 cut(s)	838
AspS9I	GGNCC	2 cut(s)	40, 315
AsuHPI	GGTGA	2 cut(s)	1150, 1159
AvaII	GGWCC	2 cut(s)	40, 315
BbvI	GCAGC	1 cut(s)	945
BccI	CCATC	2 cut(s)	645, 1226
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	134, 313
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	2 cut(s)	799, 1158
BfaI	CTAG	1 cut(s)	963
BglII	AGATCT	2 cut(s)	761, 959
BisI	GCNGC	2 cut(s)	934, 1353
BlsI	GCNGC	2 cut(s)	935, 1354
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	134, 313
Bme18I	GGWCC	2 cut(s)	40, 315
BmgT120I	GGNCC	2 cut(s)	40, 315
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	134, 313
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	166, 353, 1123
BmuI	ACTGGG	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	1158
BsaJI	CCNNGG	2 cut(s)	132, 311
BsaWI	WCCGGW	1 cut(s)	1160
BsaXI	ACNNNNNCTCC	4 cut(s)	670, 676, 700, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 251
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	4 cut(s)	426, 725, 1100, 1158
Bse3DI	GCAATG	4 cut(s)	203, 236, 804, 821
Bse8I	GATNNNNATC	1 cut(s)	497
BseBI	CCWGG	2 cut(s)	134, 313
BseDI	CCNNGG	2 cut(s)	132, 311
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	2 cut(s)	137, 251
BseMI	GCAATG	4 cut(s)	203, 236, 804, 821
BseMII	CTCAG	4 cut(s)	27, 552, 1049, 1131
BseNI	ACTGG	4 cut(s)	426, 725, 1100, 1158
BseRI	GAGGAG	1 cut(s)	1157
BseXI	GCAGC	1 cut(s)	945
BseYI	CCCAGC	1 cut(s)	809
BsgI	GTGCAG	1 cut(s)	1088
BsiSI	CCGG	2 cut(s)	602, 1161
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	137, 251
BsmAI	GTCTC	2 cut(s)	799, 1158
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	982
Bso31I	GGTCTC	1 cut(s)	1158
Bsp143I	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
BspACI	CCGC	2 cut(s)	242, 786
BspCNI	CTCAG	4 cut(s)	28, 553, 1050, 1132
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	1278
BspQI	GCTCTTC	1 cut(s)	1191
BspTNI	GGTCTC	1 cut(s)	1158
BsrDI	GCAATG	4 cut(s)	203, 236, 804, 821
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	4 cut(s)	426, 725, 1100, 1158
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	132, 311
BssMI	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
Bst2UI	CCWGG	2 cut(s)	134, 313
Bst4CI	ACNGT	4 cut(s)	162, 481, 547, 1025
Bst6I	CTCTTC	2 cut(s)	511, 1191
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	236, 279, 465
BstDEI	CTNAG	5 cut(s)	36, 50, 561, 1058, 1140
BstEII	GGTNACC	1 cut(s)	1156
BstKTI	GATC	7 cut(s)	260, 495, 501, 739, 764, 962, 1273
BstMAI	GTCTC	2 cut(s)	799, 1158
BstMBI	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 1111
BstNI	CCWGG	2 cut(s)	134, 313
BstNSI	RCATGY	2 cut(s)	281, 467
BstPI	GGTNACC	1 cut(s)	1156
BstSCI	CCNGG	2 cut(s)	132, 311
BstV1I	GCAGC	1 cut(s)	945
BstX2I	RGATCY	3 cut(s)	761, 959, 1270
BstYI	RGATCY	3 cut(s)	761, 959, 1270
BtsIMutI	CAGTG	2 cut(s)	419, 486
Cac8I	GCNNGC	3 cut(s)	236, 279, 465
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	40, 315
Csp6I	GTAC	5 cut(s)	103, 213, 994, 1048, 1125
CviAII	CATG	6 cut(s)	278, 284, 464, 791, 1064, 1343
CviJI	RGCY	6 cut(s)	26, 605, 919, 1201, 1252, 1312
CviKI_1	RGCY	6 cut(s)	26, 605, 919, 1201, 1252, 1312
CviQI	GTAC	5 cut(s)	103, 213, 994, 1048, 1125
DdeI	CTNAG	5 cut(s)	36, 50, 561, 1058, 1140
DpnI	GATC	7 cut(s)	259, 494, 500, 738, 763, 961, 1272
DpnII	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
DraI	TTTAAA	3 cut(s)	148, 702, 1188
DraIII	CACNNNGTG	1 cut(s)	731
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	511, 1191
EarI	CTCTTC	2 cut(s)	511, 1191
Eco31I	GGTCTC	1 cut(s)	1158
Eco47I	GGWCC	2 cut(s)	40, 315
Eco57I	CTGAAG	3 cut(s)	6, 905, 1002
Eco91I	GGTNACC	1 cut(s)	1156
EcoO109I	RGGNCCY	1 cut(s)	315
EcoO65I	GGTNACC	1 cut(s)	1156
EcoRII	CCWGG	2 cut(s)	132, 311
FaeI	CATG	6 cut(s)	281, 287, 467, 794, 1067, 1346
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	6 cut(s)	277, 283, 463, 790, 1063, 1342
FauI	CCCGC	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	2 cut(s)	934, 1353
Fsp4HI	GCNGC	2 cut(s)	934, 1353
FspBI	CTAG	1 cut(s)	963
GluI	GCNGC	2 cut(s)	934, 1353
GsaI	CCCAGC	1 cut(s)	813
GsuI	CTGGAG	1 cut(s)	786
HapII	CCGG	2 cut(s)	602, 1161
Hin1II	CATG	6 cut(s)	281, 287, 467, 794, 1067, 1346
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	5 cut(s)	305, 563, 1054, 1278, 1327
HpaII	CCGG	2 cut(s)	602, 1161
HphI	GGTGA	2 cut(s)	1150, 1159
Hpy166II	GTNNAC	2 cut(s)	158, 718
Hpy188I	TCNGA	9 cut(s)	10, 37, 175, 503, 885, 924, 1021, 1059, 1141
Hpy188III	TCNNGA	4 cut(s)	302, 496, 765, 963
Hpy8I	GTNNAC	2 cut(s)	158, 718
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	9 cut(s)	255, 316, 350, 481, 675, 905, 1171, 1217, 1290
HpyCH4III	ACNGT	4 cut(s)	162, 481, 547, 1025
HpyCH4IV	ACGT	2 cut(s)	187, 1206
HpyCH4V	TGCA	7 cut(s)	4, 208, 224, 437, 467, 779, 1105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 1111
HpyF3I	CTNAG	5 cut(s)	36, 50, 561, 1058, 1140
HpySE526I	ACGT	2 cut(s)	187, 1206
Hsp92II	CATG	6 cut(s)	281, 287, 467, 794, 1067, 1346
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
LguI	GCTCTTC	1 cut(s)	1191
LmnI	GCTCC	3 cut(s)	243, 274, 930
Lsp1109I	GCAGC	1 cut(s)	945
LweI	GCATC	3 cut(s)	166, 353, 1123
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	2 cut(s)	187, 1206
MaeIII	GTNAC	6 cut(s)	197, 346, 723, 754, 1037, 1156
MalI	GATC	7 cut(s)	259, 494, 500, 738, 763, 961, 1272
MboI	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
MboII	GAAGA	8 cut(s)	455, 528, 660, 1008, 1208, 1305, 1333, 1336
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	3 cut(s)	761, 959, 1270
MluCI	AATT	9 cut(s)	15, 261, 292, 398, 456, 774, 834, 1183, 1214
MlyI	GAGTC	3 cut(s)	299, 572, 1048
MmeI	TCCRAC	3 cut(s)	674, 751, 811
MroXI	GAANNNNTTC	1 cut(s)	838
MseI	TTAA	5 cut(s)	147, 459, 701, 1187, 1209
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	2 cut(s)	602, 1161
MspR9I	CCNGG	2 cut(s)	134, 313
MssI	GTTTAAAC	1 cut(s)	702
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	2 cut(s)	134, 313
MwoI	GCNNNNNNNGC	2 cut(s)	235, 1111
NdeII	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
NlaIII	CATG	6 cut(s)	281, 287, 467, 794, 1067, 1346
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	567
NmuCI	GTSAC	5 cut(s)	197, 346, 723, 754, 1156
NspI	RCATGY	2 cut(s)	281, 467
PaeI	GCATGC	2 cut(s)	281, 467
PciSI	GCTCTTC	1 cut(s)	1191
PctI	GAATGC	1 cut(s)	982
PdmI	GAANNNNTTC	1 cut(s)	838
PfeI	GAWTC	2 cut(s)	1278, 1327
PkrI	GCNGC	2 cut(s)	935, 1354
PleI	GAGTC	3 cut(s)	299, 571, 1048
PmeI	GTTTAAAC	1 cut(s)	702
PpsI	GAGTC	3 cut(s)	299, 571, 1048
PpuMI	RGGWCCY	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	183
Psp1406I	AACGTT	2 cut(s)	187, 1206
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	132, 311
PspEI	GGTNACC	1 cut(s)	1156
PspFI	CCCAGC	1 cut(s)	809
PspGI	CCWGG	2 cut(s)	132, 311
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	40, 315
PspPPI	RGGWCCY	1 cut(s)	315
PsuI	RGATCY	3 cut(s)	761, 959, 1270
RsaI	GTAC	5 cut(s)	104, 214, 995, 1049, 1126
RsaNI	GTAC	5 cut(s)	103, 213, 994, 1048, 1125
RseI	CAYNNNNRTG	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	1191
SaqAI	TTAA	5 cut(s)	147, 459, 701, 1187, 1209
SatI	GCNGC	2 cut(s)	934, 1353
Sau3AI	GATC	7 cut(s)	257, 492, 498, 736, 761, 959, 1270
Sau96I	GGNCC	2 cut(s)	40, 315
ScaI	AGTACT	1 cut(s)	214
SchI	GAGTC	3 cut(s)	299, 572, 1048
ScrFI	CCNGG	2 cut(s)	134, 313
SfaNI	GCATC	3 cut(s)	166, 353, 1123
SinI	GGWCC	2 cut(s)	40, 315
SmiI	ATTTAAAT	1 cut(s)	1188
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
SphI	GCATGC	2 cut(s)	281, 467
Sse9I	AATT	9 cut(s)	15, 261, 292, 398, 456, 774, 834, 1183, 1214
SsiI	CCGC	2 cut(s)	242, 786
SspMI	CTAG	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	132, 311
SwaI	ATTTAAAT	1 cut(s)	1188
TaaI	ACNGT	4 cut(s)	162, 481, 547, 1025
TaiI	ACGT	2 cut(s)	190, 1209
TaqI	TCGA	2 cut(s)	1004, 1109
TasI	AATT	9 cut(s)	15, 261, 292, 398, 456, 774, 834, 1183, 1214
TatI	WGTACW	2 cut(s)	102, 212
TfiI	GAWTC	2 cut(s)	1278, 1327
Tru1I	TTAA	5 cut(s)	147, 459, 701, 1187, 1209
Tru9I	TTAA	5 cut(s)	147, 459, 701, 1187, 1209
TscAI	CASTG	2 cut(s)	426, 486
TseFI	GTSAC	5 cut(s)	197, 346, 723, 754, 1156
TseI	GCWGC	2 cut(s)	933, 1352
Tsp45I	GTSAC	5 cut(s)	197, 346, 723, 754, 1156
TspDTI	ATGAA	7 cut(s)	27, 286, 759, 815, 926, 1236, 1262
TspRI	CASTG	2 cut(s)	426, 486
VpaK11BI	GGWCC	2 cut(s)	40, 315
XapI	RAATTY	2 cut(s)	292, 1183
XbaI	TCTAGA	1 cut(s)	962
XceI	RCATGY	2 cut(s)	281, 467
XmnI	GAANNNNTTC	1 cut(s)	838
XspI	CTAG	1 cut(s)	963
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.