Rw4G030680

Uridine-cytidine kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
57406342 .. 57413263
6922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030680.1

Sequence Viewer

Length: 1398 bp
ATGGCTCAAGATATGTCTGGTGCTGATTCACATCAAAAACGGTCAGGCCTTTTAAAAGATCAAGTCCGACTGGTTAAGAGGAAGGATTCCAATCATTATGAGATTGCACCAATCCAAAGTCCTTTGTCATTTGAGAAGGGTTTCTTTATTGTAATCCGTGCATGTCAGTTATTAGCTCAAAAGAATGATGGAATAATATTGGTAGGAGTGGCGGGTCCTTCTGGGGCTGGAAAGTCTGTGTTTACTGAAAAAATACTGAACTTTATGCCCAGCGTTGCGGTCATATCAATGGACAACTACAATGACGCTAGTCGAATTGTTGATGGCAACTTTGATGATCCACGTTTGACAGACTACGACACATTGCTCCAGAATGTCAGTGACTTAAGAGCAGGGAAGCCGGTTGAGGTTCCAGTATATGACTTCAAGTCCAGTTCCCGCACAGGATACAGGACAGTTGAAGTCCCAAGCTCCCGTATCGTGATCATTGAGGGCATCTATGCTTTGAGTGAAAAGTTGCGGCCTTTTCTGGATCTACGAGTATCTGTCACAGGTGGTGTTCACTTTGACCTTGTTAAAAGGGTTTTACGGGACATACAGCGAGCTGGCCAAGAACCAGAAGAAATAATTCATCAAATATCTGAAACAGTATACCCAATGTACAAGGCCTTTATCGAGCCAGATCTTCAAACTGCTCATATAAAAATTATCAACAAGTTCAATCCATTTACTGGATTTCAAAGTCCCACTTATATTTTAAAGTCAGCGAAGCCCTTGTCGGTGGATCAAATAAAGGCAGTCTTTATTGAAGAGCATACAGAAGCTAAGGAGGAGACCTATGACATATACCTTCTACCACCTGGTGAAGATCCAGAATCTTGCCAATCATATCTGAGGATGCGTGATAAAGATGGGAAATATAGTCTCATGTTTGAGGAGTGGGTGACAGATAATCCATTTGTTATATCACCAAGAATAACTTTTGAGGTCAGTGTGCGTCTTCTTGGTGGACTAATGGCTCTGGGATACACAATTGCTACTATCCTTAAAAGAAGCAGTCATGTATTCTTCAATGATGGTGTATGTGTAAAAATTGATTGGCTAGAGCAACTCAATCGTCGATATATTCAGGTGCAGGGAAAAGATCGAGTAGTTGTAAGATGTGTTGCAGAGCAGCTTGGCTTGGAAGGTTCATACATTCCTCGTACCTACATTGAACAAATTCAACTGGAAAAGCTCGTGAATGAGGTCATGGCCTTGCCAGATGATTTAAAGACAAGGCTTAGCATAGATGAGGATCTTGTTTTGAGCCCCAGAGATGCACTTTCTAAAGTCTCTGCAGCTGTCATGAGAAATAAGCATCTCAAGAGGTTTGATTTTCAATCCACCTATACATAA

Protein Analysis

465

Amino Acids

52.73

Weight (kDa)

6.14

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 68 - 236 3.5e-24 Phosphoribulokinase / Uridine kinase family
CYTH PF01928 252 - 404 2.6e-21 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AccI GTMKAC 1 cut(s) 651
AciI CCGC 4 cut(s) 212, 278, 439, 520
AclWI GGATC 5 cut(s) 332, 540, 792, 863, 1305
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 1 cut(s) 1221
AdeI CACNNNGTG 1 cut(s) 863
AfaI GTAC 2 cut(s) 662, 1207
AfiI CCNNNNNNNGG 1 cut(s) 731
AflII CTTAAG 1 cut(s) 385
AhdI GACNNNNNGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 859
AluBI AGCT 7 cut(s) 176, 471, 605, 824, 1177, 1237, 1343
AluI AGCT 7 cut(s) 176, 471, 605, 824, 1177, 1237, 1343
Alw26I GTCTC 3 cut(s) 827, 929, 1339
AlwI GGATC 5 cut(s) 332, 540, 792, 863, 1305
AoxI GGCC 5 cut(s) 46, 521, 607, 666, 1254
ApeKI GCWGC 2 cut(s) 1174, 1340
ApoI RAATTY 1 cut(s) 1221
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
Asp700I GAANNNNTTC 3 cut(s) 140, 627, 1221
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 875, 955, 960
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 609
BanII GRGCYC 1 cut(s) 1313
BauI CACGAG 1 cut(s) 1238
BbsI GAAGAC 1 cut(s) 992
BbvI GCAGC 2 cut(s) 1186, 1352
BccI CCATC 4 cut(s) 182, 317, 905, 1070
BcgI CGANNNNNNTGC 2 cut(s) 1097, 1131
BciT130I CCWGG 1 cut(s) 861
BciVI GTATCC 2 cut(s) 440, 1019
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 3 cut(s) 827, 929, 1339
BfaI CTAG 2 cut(s) 309, 1103
BfmI CTRYAG 1 cut(s) 1338
BfrI CTTAAG 1 cut(s) 385
BfuI GTATCC 2 cut(s) 440, 1019
BglII AGATCT 1 cut(s) 682
BisI GCNGC 3 cut(s) 521, 1175, 1341
BlpI GCTNAGC 1 cut(s) 1283
BlsI GCNGC 3 cut(s) 522, 1176, 1342
Bme1390I CCNGG 1 cut(s) 861
Bme18I GGWCC 1 cut(s) 215
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 216, 411
BmrFI CCNGG 1 cut(s) 861
BmsI GCATC 4 cut(s) 504, 888, 1309, 1369
BoxI GACNNNNGTC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 992
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 825
Bpu1102I GCTNAGC 1 cut(s) 1283
BpuEI CTTGAG 1 cut(s) 1349
BsaBI GATNNNNATC 3 cut(s) 30, 90, 1296
BsaI GGTCTC 1 cut(s) 827
Bsc4I CCNNNNNNNGG 1 cut(s) 731
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 5 cut(s) 75, 413, 432, 736, 1233
Bse3DI GCAATG 1 cut(s) 362
Bse8I GATNNNNATC 3 cut(s) 30, 90, 1296
BseBI CCWGG 1 cut(s) 861
BseGI GGATG 1 cut(s) 903
BseJI GATNNNNATC 3 cut(s) 30, 90, 1296
BseLI CCNNNNNNNGG 1 cut(s) 731
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 884
BseNI ACTGG 5 cut(s) 75, 413, 432, 736, 1233
BseRI GAGGAG 2 cut(s) 845, 950
BseXI GCAGC 2 cut(s) 1186, 1352
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 1154
BshFI GGCC 5 cut(s) 48, 523, 609, 668, 1256
BsiSI CCGG 1 cut(s) 401
BslFI GGGAC 3 cut(s) 449, 605, 729
BslI CCNNNNNNNGG 1 cut(s) 731
BsmAI GTCTC 3 cut(s) 827, 929, 1339
BsmFI GGGAC 3 cut(s) 449, 605, 729
BsnI GGCC 5 cut(s) 48, 523, 609, 668, 1256
Bso31I GGTCTC 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 1313
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
Bsp1720I GCTNAGC 1 cut(s) 1283
BspACI CCGC 4 cut(s) 212, 278, 439, 520
BspANI GGCC 5 cut(s) 48, 523, 609, 668, 1256
BspCNI CTCAG 1 cut(s) 885
BspHI TCATGA 1 cut(s) 1347
BspLI GGNNCC 2 cut(s) 216, 411
BspMAI CTGCAG 1 cut(s) 1342
BspPI GGATC 5 cut(s) 332, 540, 792, 863, 1305
BspQI GCTCTTC 1 cut(s) 804
BspTI CTTAAG 1 cut(s) 385
BspTNI GGTCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 5 cut(s) 75, 413, 432, 736, 1233
BssAI RCCGGY 1 cut(s) 400
BssMI GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
BssNAI GTATAC 1 cut(s) 652
BssSI CACGAG 1 cut(s) 1238
Bst1107I GTATAC 1 cut(s) 652
Bst2BI CACGAG 1 cut(s) 1238
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 3 cut(s) 42, 457, 649
Bst6I CTCTTC 1 cut(s) 804
BstAFI CTTAAG 1 cut(s) 385
BstAUI TGTACA 1 cut(s) 660
BstC8I GCNNGC 2 cut(s) 603, 607
BstDEI CTNAG 3 cut(s) 825, 893, 1283
BstF5I GGATG 1 cut(s) 903
BstKTI GATC 9 cut(s) 61, 340, 486, 535, 685, 787, 871, 1147, 1300
BstMAI GTCTC 3 cut(s) 827, 929, 1339
BstMBI GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 1 cut(s) 165
BstPAI GACNNNNGTC 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 859
BstSFI CTRYAG 1 cut(s) 1338
BstV1I GCAGC 2 cut(s) 1186, 1352
BstV2I GAAGAC 1 cut(s) 992
BstX2I RGATCY 4 cut(s) 532, 682, 868, 1297
BstYI RGATCY 4 cut(s) 532, 682, 868, 1297
BstZ17I GTATAC 1 cut(s) 652
BsuI GTATCC 2 cut(s) 440, 1019
BsuRI GGCC 5 cut(s) 48, 523, 609, 668, 1256
BtsCI GGATG 1 cut(s) 903
BtsIMutI CAGTG 2 cut(s) 385, 997
Cac8I GCNNGC 2 cut(s) 603, 607
CciI TCATGA 1 cut(s) 1347
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 2 cut(s) 314, 986
CsiI ACCWGGT 1 cut(s) 859
Csp6I GTAC 2 cut(s) 661, 1206
CviAII CATG 5 cut(s) 162, 928, 1061, 1252, 1348
CviQI GTAC 2 cut(s) 661, 1206
DdeI CTNAG 3 cut(s) 825, 893, 1283
DpnI GATC 9 cut(s) 60, 339, 485, 534, 684, 786, 870, 1146, 1299
DpnII GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
DraI TTTAAA 3 cut(s) 54, 759, 1272
DraIII CACNNNGTG 1 cut(s) 863
DriI GACNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 804
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 804
Eco147I AGGCCT 2 cut(s) 48, 668
Eco24I GRGCYC 1 cut(s) 1313
Eco31I GGTCTC 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 1313
FaeI CATG 5 cut(s) 165, 931, 1064, 1255, 1351
FalI AAGNNNNNCTT 8 cut(s) 128, 160, 733, 765, 785, 817, 964, 996
FaqI GGGAC 3 cut(s) 449, 605, 729
FatI CATG 5 cut(s) 161, 927, 1060, 1251, 1347
FauI CCCGC 2 cut(s) 205, 446
FbaI TGATCA 1 cut(s) 483
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 3 cut(s) 521, 1175, 1341
FokI GGATG 1 cut(s) 910
FriOI GRGCYC 1 cut(s) 1313
Fsp4HI GCNGC 3 cut(s) 521, 1175, 1341
FspBI CTAG 2 cut(s) 309, 1103
GluI GCNGC 3 cut(s) 521, 1175, 1341
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 5 cut(s) 48, 523, 609, 668, 1256
HapII CCGG 1 cut(s) 401
HgaI GACGC 2 cut(s) 314, 986
Hin1II CATG 5 cut(s) 165, 931, 1064, 1255, 1351
HinfI GANTC 3 cut(s) 26, 86, 875
HpaII CCGG 1 cut(s) 401
HphI GGTGA 3 cut(s) 875, 955, 960
Hpy166II GTNNAC 4 cut(s) 243, 562, 652, 1010
Hpy188I TCNGA 3 cut(s) 68, 643, 894
Hpy188III TCNNGA 8 cut(s) 8, 370, 481, 530, 872, 1240, 1348, 1366
Hpy8I GTNNAC 4 cut(s) 243, 562, 652, 1010
Hpy99I CGWCG 1 cut(s) 1122
HpyAV CCTTC 5 cut(s) 76, 130, 228, 860, 1181
HpyCH4III ACNGT 3 cut(s) 42, 457, 649
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 6 cut(s) 107, 161, 1135, 1169, 1322, 1340
HpyF3I CTNAG 3 cut(s) 825, 893, 1283
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 165, 931, 1064, 1255, 1351
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 2 cut(s) 372, 476
Lsp1109I GCAGC 2 cut(s) 1186, 1352
LweI GCATC 4 cut(s) 504, 888, 1309, 1369
MabI ACCWGGT 1 cut(s) 859
MaeI CTAG 2 cut(s) 309, 1103
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 3 cut(s) 380, 547, 943
MalI GATC 9 cut(s) 60, 339, 485, 534, 684, 786, 870, 1146, 1299
MboI GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
MboII GAAGA 6 cut(s) 632, 677, 821, 878, 992, 1060
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 4 cut(s) 532, 682, 868, 1297
MhlI GDGCHC 1 cut(s) 1313
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 6 cut(s) 315, 627, 705, 1032, 1092, 1221
MluNI TGGCCA 1 cut(s) 609
MmeI TCCRAC 1 cut(s) 91
Mox20I TGGCCA 1 cut(s) 609
MroXI GAANNNNTTC 3 cut(s) 140, 627, 1221
MscI TGGCCA 1 cut(s) 609
MseI TTAA 7 cut(s) 53, 75, 386, 576, 758, 1047, 1271
MslI CAYNNNNRTG 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 1343
MspCI CTTAAG 1 cut(s) 385
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 861
MunI CAATTG 1 cut(s) 1032
MvaI CCWGG 1 cut(s) 861
NdeII GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
NlaIII CATG 5 cut(s) 165, 931, 1064, 1255, 1351
NlaIV GGNNCC 2 cut(s) 216, 411
NmuCI GTSAC 3 cut(s) 380, 547, 943
NspI RCATGY 1 cut(s) 165
PagI TCATGA 1 cut(s) 1347
PceI AGGCCT 2 cut(s) 48, 668
PciSI GCTCTTC 1 cut(s) 804
PdmI GAANNNNTTC 3 cut(s) 140, 627, 1221
PfeI GAWTC 3 cut(s) 26, 86, 875
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 3 cut(s) 522, 1176, 1342
PpuMI RGGWCCY 1 cut(s) 215
PshAI GACNNNNGTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 859
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 2 cut(s) 216, 411
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 1 cut(s) 1342
PsuI RGATCY 4 cut(s) 532, 682, 868, 1297
PvuII CAGCTG 1 cut(s) 1343
RsaI GTAC 2 cut(s) 662, 1207
RsaNI GTAC 2 cut(s) 661, 1206
RseI CAYNNNNRTG 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 7 cut(s) 53, 75, 386, 576, 758, 1047, 1271
SatI GCNGC 3 cut(s) 521, 1175, 1341
Sau3AI GATC 9 cut(s) 58, 337, 483, 532, 682, 784, 868, 1144, 1297
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 861
SduI GDGCHC 1 cut(s) 1313
SexAI ACCWGGT 1 cut(s) 859
SfaNI GCATC 4 cut(s) 504, 888, 1309, 1369
SfcI CTRYAG 1 cut(s) 1338
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 3 cut(s) 6, 385, 1364
SmoI CTYRAG 3 cut(s) 6, 385, 1364
Sse9I AATT 6 cut(s) 315, 627, 705, 1032, 1092, 1221
SseBI AGGCCT 2 cut(s) 48, 668
SsiI CCGC 4 cut(s) 212, 278, 439, 520
SspI AATATT 1 cut(s) 198
SspMI CTAG 2 cut(s) 309, 1103
StuI AGGCCT 2 cut(s) 48, 668
StyD4I CCNGG 1 cut(s) 859
TaaI ACNGT 3 cut(s) 42, 457, 649
TaiI ACGT 1 cut(s) 346
TaqI TCGA 4 cut(s) 313, 675, 1120, 1147
TasI AATT 6 cut(s) 315, 627, 705, 1032, 1092, 1221
TatI WGTACW 1 cut(s) 660
TauI GCSGC 1 cut(s) 523
TfiI GAWTC 3 cut(s) 26, 86, 875
Tru1I TTAA 7 cut(s) 53, 75, 386, 576, 758, 1047, 1271
Tru9I TTAA 7 cut(s) 53, 75, 386, 576, 758, 1047, 1271
TscAI CASTG 2 cut(s) 385, 997
TseFI GTSAC 3 cut(s) 380, 547, 943
TseI GCWGC 2 cut(s) 1174, 1340
Tsp45I GTSAC 3 cut(s) 380, 547, 943
TspDTI ATGAA 2 cut(s) 620, 1182
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 2 cut(s) 385, 997
Van91I CCANNNNNTGG 1 cut(s) 731
Vha464I CTTAAG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 1221
XceI RCATGY 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 651
XmnI GAANNNNTTC 3 cut(s) 140, 627, 1221
XspI CTAG 2 cut(s) 309, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.