Rroxscaffold_5G00380780

Protein of unknown function (DUF1666)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
60926215 .. 60930088
3874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380780.1

Sequence Viewer

Length: 1383 bp
ATGATGGTTATTACGAAATTCATGGCGCTGCAAACCCAGTTTGATTTCATTAGCAAACGTGTGTCAAGCGGAAACATGCTTGGAGTCCTCGGCTCCATTTGGGTTTTTGTCTGCAACTACTTGTTCTTTGTGTCTGGATTCATTAGTAGATACATACTTATCAGATTTCAGGCAGATGATCTGAGAAATCATAACCCTGTTGTTTGTTTGGAGCGTGATCATCAATTTGATGCAAATAGAGACGAAAAAGAAGAGGTGTCTTTGGATTCTCCTATTATAAGAAGAAATGATGATCAAAACAGAGCAGAAACAGAGGATTCCGATCAAAACAGAGCGCAAACAGAGGATTCCGATCAAAACAGAGCAGAAACGGATAATTCAGATCAAACCAGAGCAGAAACAGAGGATTCCGGTCAAAACAGAGCAGAAACGGAGAATTCCTACCAAAACAGAGCAGAAACGGAGAATTCCGATCAAAACAGAGCAGAAACAGAGAATTCCGGTTTTGTGGAGACCGTCTCTGCTGTAACCACCGATTTGTATGAGTATACTTCTAATAGAGTTATCAATGGCTATATGGAAGAACCAAAAACCACGAGCTTTATTGTCCAAGAATTCTATGTTGATTGGGGCAGTTCTAAATTCTCTGATTATCAAATTCCTATTAAAGCAGCAGAGGATGATGATGCTGATCAGGAAAAAGTAGTGGATTCTATTGAAAGCGTTGAGGCCTTAGAGAATAGAGAGCACGAGAAACCAGTCACTGATCAAAACCCTCTTGAGGAATTCAGTACTGGGAAGGTTTTAGATGCTGAAATTGAGCTTTGTGAGGTTGAAGAAGACAATTTCTCTGTAGTTTCTGATTCGAAGCAAGACCCAGTTAGCTCAAGAAAAGATCATGATGTCATTGATGTGGGTTCACTTAACTACGAGTTTTTGATATACAGAAATGTGGTTCAGTTTGATGAGGGACTTGACCCTCAAAGCTCTGGATTCCAGTATGATGAGGAAGATCATAGAGTCCACTTTGATATGGAAGATGATCAATTGCTTGATGTAAGTATCCCAGATGGAAAAGCAGTTGTCTTTTCCGATCAACTAGATGGTTCTGAATCTCCTGATGATGAATACATTGAATTGTTAGAGCCCCAATTGAGAAGTTATAGTCAACGACTTGATCAAGTTGTGGAGAGAGGTGAAGATAAAGAGGAACTAGTCCAAGTTGAGACAGAAGCCACGAGTCCACTAGTACAATCCGCACAAGAAGAAATAGGATTGCAGCCTAAAAAGTTTGGTTTGTATTCGGATGATGAAAACGAATTGGAGTCTCCTGACGAGCATGATGATCTAATTGAACAGATTAAAAGGAAATTAAGAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

52.85

Weight (kDa)

4.16

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014609)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69610 AT1G69610 AT1G69610
fragaria_vesca FvH4_4g31360
malus_domestica MD16G1072900.v1.1
prunus_persica Prupe.1G274600_v2.0.a1
pyrus_communis pycom16g06320
rosa_chinensis RchiOBHm_Chr4g0439871
rosa_laevigata RLG00000006231
rosa_multiflora Rmu_sc0000497.1_g000007
rosa_roxburghii Rroxscaffold_5G00380780
rosa_rugosa Rorug04G0321800
rosa_samantha Rh4AG372900 Rh4BG385300 Rh4CG399800 Rh4DG379500
rosa_wichuraiana Rw4G031880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AccI GTMKAC 1 cut(s) 548
AciI CCGC 2 cut(s) 69, 1257
AcsI RAATTY 8 cut(s) 17, 436, 466, 496, 614, 641, 657, 785
AfaI GTAC 2 cut(s) 793, 1251
AfiI CCNNNNNNNGG 1 cut(s) 781
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 4 cut(s) 719, 836, 1136, 1355
AhlI ACTAGT 2 cut(s) 1213, 1246
AluBI AGCT 4 cut(s) 600, 823, 885, 987
AluI AGCT 4 cut(s) 600, 823, 885, 987
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 5 cut(s) 234, 506, 523, 1220, 1332
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 1 cut(s) 729
ApeKI GCWGC 3 cut(s) 28, 671, 1279
ApoI RAATTY 8 cut(s) 17, 436, 466, 496, 614, 641, 657, 785
AspLEI GCGC 2 cut(s) 28, 337
AsuHPI GGTGA 1 cut(s) 1208
AsuII TTCGAA 1 cut(s) 866
BanII GRGCYC 1 cut(s) 1149
BauI CACGAG 3 cut(s) 595, 749, 1237
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 3 cut(s) 15, 683, 1291
BccI CCATC 2 cut(s) 1064, 1097
BciVI GTATCC 1 cut(s) 1073
BclI TGATCA 6 cut(s) 217, 292, 691, 766, 1042, 1177
BcoDI GTCTC 5 cut(s) 234, 506, 523, 1220, 1332
BcuI ACTAGT 2 cut(s) 1213, 1246
BfaI CTAG 3 cut(s) 1100, 1214, 1247
BfmI CTRYAG 1 cut(s) 852
BfoI RGCGCY 1 cut(s) 29
BfuI GTATCC 1 cut(s) 1073
BisI GCNGC 3 cut(s) 29, 672, 1280
BlsI GCNGC 3 cut(s) 30, 673, 1281
BmcAI AGTACT 1 cut(s) 793
BmiI GGNNCC 1 cut(s) 94
BmrI ACTGGG 3 cut(s) 31, 804, 872
BmsI GCATC 3 cut(s) 220, 676, 799
BmuI ACTGGG 3 cut(s) 31, 804, 872
BpiI GAAGAC 1 cut(s) 846
BplI GAGNNNNNCTC 2 cut(s) 503, 535
Bpu14I TTCGAA 1 cut(s) 866
BpuEI CTTGAG 2 cut(s) 800, 871
BsaBI GATNNNNATC 3 cut(s) 321, 351, 690
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 2 cut(s) 410, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse1I ACTGG 5 cut(s) 37, 758, 799, 878, 997
Bse8I GATNNNNATC 3 cut(s) 321, 351, 690
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 685, 1312
BseJI GATNNNNATC 3 cut(s) 321, 351, 690
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 5 cut(s) 37, 758, 799, 878, 997
BseXI GCAGC 3 cut(s) 15, 683, 1291
BshFI GGCC 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 750
BsiSI CCGG 2 cut(s) 411, 501
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 5 cut(s) 234, 506, 523, 1220, 1332
BsmBI CGTCTC 2 cut(s) 234, 523
BsmFI GGGAC 1 cut(s) 984
BsnI GGCC 1 cut(s) 731
Bso31I GGTCTC 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 866
Bsp1286I GDGCHC 2 cut(s) 750, 1149
BspACI CCGC 2 cut(s) 69, 1257
BspANI GGCC 1 cut(s) 731
BspCNI CTCAG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 866
BspTNI GGTCTC 1 cut(s) 506
BsrI ACTGG 5 cut(s) 37, 758, 799, 878, 997
BssECI CCNNGG 1 cut(s) 88
BssNAI GTATAC 1 cut(s) 549
BssSI CACGAG 3 cut(s) 595, 749, 1237
Bst1107I GTATAC 1 cut(s) 549
Bst2BI CACGAG 3 cut(s) 595, 749, 1237
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 866
BstDEI CTNAG 2 cut(s) 182, 733
BstF5I GGATG 2 cut(s) 685, 1312
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 337
BstMAI GTCTC 5 cut(s) 234, 506, 523, 1220, 1332
BstNSI RCATGY 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 852
BstV1I GCAGC 3 cut(s) 15, 683, 1291
BstV2I GAAGAC 1 cut(s) 846
BstZ17I GTATAC 1 cut(s) 549
BsuI GTATCC 1 cut(s) 1073
BsuRI GGCC 1 cut(s) 731
BtsCI GGATG 2 cut(s) 685, 1312
BtsIMutI CAGTG 1 cut(s) 762
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 898
CfoI GCGC 2 cut(s) 28, 337
Csp6I GTAC 2 cut(s) 792, 1250
CviAII CATG 4 cut(s) 22, 76, 899, 1340
CviQI GTAC 2 cut(s) 792, 1250
DdeI CTNAG 2 cut(s) 182, 733
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 731
Eco24I GRGCYC 1 cut(s) 1149
Eco31I GGTCTC 1 cut(s) 506
EcoRI GAATTC 5 cut(s) 436, 466, 496, 614, 785
EcoT38I GRGCYC 1 cut(s) 1149
Esp3I CGTCTC 2 cut(s) 234, 523
FaeI CATG 4 cut(s) 25, 79, 902, 1343
FaqI GGGAC 1 cut(s) 984
FatI CATG 4 cut(s) 21, 75, 898, 1339
FbaI TGATCA 6 cut(s) 217, 292, 691, 766, 1042, 1177
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 3 cut(s) 29, 672, 1280
FokI GGATG 2 cut(s) 692, 1319
FriOI GRGCYC 1 cut(s) 1149
Fsp4HI GCNGC 3 cut(s) 29, 672, 1280
FspBI CTAG 3 cut(s) 1100, 1214, 1247
GlaI GCGC 2 cut(s) 27, 336
GluI GCNGC 3 cut(s) 29, 672, 1280
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 1 cut(s) 731
HapII CCGG 2 cut(s) 411, 501
HhaI GCGC 2 cut(s) 28, 337
Hin1II CATG 4 cut(s) 25, 79, 902, 1343
Hin6I GCGC 2 cut(s) 26, 335
HinP1I GCGC 2 cut(s) 26, 335
HincII GTYRAC 1 cut(s) 1169
HindII GTYRAC 1 cut(s) 1169
HpaII CCGG 2 cut(s) 411, 501
HphI GGTGA 1 cut(s) 1208
Hpy166II GTNNAC 5 cut(s) 549, 920, 1024, 1169, 1244
Hpy188III TCNNGA 8 cut(s) 135, 695, 779, 888, 899, 990, 1118, 1331
Hpy8I GTNNAC 5 cut(s) 549, 920, 1024, 1169, 1244
HpyAV CCTTC 1 cut(s) 793
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 2 cut(s) 58, 1379
HpyCH4V TGCA 4 cut(s) 31, 114, 233, 1279
HpyF3I CTNAG 2 cut(s) 182, 733
HpySE526I ACGT 2 cut(s) 58, 1379
Hsp92II CATG 4 cut(s) 25, 79, 902, 1343
HspAI GCGC 2 cut(s) 26, 335
Ksp22I TGATCA 6 cut(s) 217, 292, 691, 766, 1042, 1177
LmnI GCTCC 2 cut(s) 98, 211
Lsp1109I GCAGC 3 cut(s) 15, 683, 1291
LweI GCATC 3 cut(s) 220, 676, 799
MaeI CTAG 3 cut(s) 1100, 1214, 1247
MaeII ACGT 2 cut(s) 58, 1379
MaeIII GTNAC 2 cut(s) 526, 760
MboII GAAGA 9 cut(s) 263, 294, 593, 848, 851, 1022, 1049, 1211, 1277
MfeI CAATTG 2 cut(s) 1046, 1151
MhlI GDGCHC 2 cut(s) 750, 1149
MlyI GAGTC 4 cut(s) 93, 1029, 1249, 1334
MseI TTAA 4 cut(s) 666, 924, 1362, 1373
MslI CAYNNNNRTG 1 cut(s) 911
MspI CCGG 2 cut(s) 411, 501
MunI CAATTG 2 cut(s) 1046, 1151
NlaIII CATG 4 cut(s) 25, 79, 902, 1343
NlaIV GGNNCC 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 760
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 866
PagI TCATGA 1 cut(s) 898
PceI AGGCCT 1 cut(s) 731
PfeI GAWTC 9 cut(s) 138, 266, 317, 347, 407, 710, 863, 993, 1112
PkrI GCNGC 3 cut(s) 30, 673, 1281
PleI GAGTC 4 cut(s) 92, 1028, 1248, 1333
PpsI GAGTC 4 cut(s) 92, 1028, 1248, 1333
PsiI TTATAA 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 764
RsaI GTAC 2 cut(s) 793, 1251
RsaNI GTAC 2 cut(s) 792, 1250
RseI CAYNNNNRTG 1 cut(s) 911
SaqAI TTAA 4 cut(s) 666, 924, 1362, 1373
SatI GCNGC 3 cut(s) 29, 672, 1280
ScaI AGTACT 1 cut(s) 793
SchI GAGTC 4 cut(s) 93, 1029, 1249, 1334
SduI GDGCHC 2 cut(s) 750, 1149
SfaNI GCATC 3 cut(s) 220, 676, 799
SfcI CTRYAG 1 cut(s) 852
SfuI TTCGAA 1 cut(s) 866
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 2 cut(s) 779, 886
SmoI CTYRAG 2 cut(s) 779, 886
SpeI ACTAGT 2 cut(s) 1213, 1246
SseBI AGGCCT 1 cut(s) 731
SsiI CCGC 2 cut(s) 69, 1257
SspMI CTAG 3 cut(s) 1100, 1214, 1247
StuI AGGCCT 1 cut(s) 731
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 2 cut(s) 61, 1382
TaqI TCGA 1 cut(s) 866
TatI WGTACW 2 cut(s) 791, 1249
TfiI GAWTC 9 cut(s) 138, 266, 317, 347, 407, 710, 863, 993, 1112
Tru1I TTAA 4 cut(s) 666, 924, 1362, 1373
Tru9I TTAA 4 cut(s) 666, 924, 1362, 1373
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 3 cut(s) 28, 671, 1279
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 5 cut(s) 10, 37, 130, 1140, 1326
TspGWI ACGGA 3 cut(s) 386, 446, 476
TspRI CASTG 1 cut(s) 769
XapI RAATTY 8 cut(s) 17, 436, 466, 496, 614, 641, 657, 785
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 3 cut(s) 1100, 1214, 1247
ZrmI AGTACT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.