Rroxscaffold_5G00386580

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014231
Physical Location & Seq
Forward (+)
65442294 .. 65447680
5387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386580.1

Sequence Viewer

Length: 2019 bp
ATGGATCCCGAAATTAATCTCGGGGAGGTTACAATCACCAAAGCGACCGGAAAGCTAAACGAGTCGCCGCCGGAGAACGGGATTGTATCAGAAACTCCCAGAGAGAAGAAAACAAATGATAATGGCGTAGCCAAGGTTAAAATTGGGAATGGAGCAGCAGAGGCAAACGTGGAGAACGGCGACGACGACGTCTTTTTTACTCCAATGGCTCCCCCGGAAGAGTCGGAGCACGTGAAATTAGCCGTTACGCCCAAATTAACAGAAGAGGCGGAACCAGAAGAATCAGAGGAAGCAGGGATCCTCCAACCTCATGCAAAGCTCCCGAAGCCCGAGGCACCGCCTGGCCTTCATGACCCTCCTCCTCCTCCTTCCCCAAACGACGGCGTTTTGGACGACAACCAGAAATTCGGAGTGGACATGCCGGCGATAGGGAAGCTCATCCGGAAGAGAAGCAACGATCTCTCCTCGGCGTTCCTGAAGAAGCTATCGTCGCTTAAGGACAACAATTTCGCCGACGAGTTTTTGAAGCCGAATGTAACCGAGTTCCATCTCTCCGGCCTCAAAGTGACGGTGAAGCACAAGAGCGAGACGGAGCAGCAAACGCAGAGTCTCAAAGGTCGGATCACCTTCTTCTCCAGGTCCAATTGCCGGGACTGCACGGCGGTCCGGAGCTTTTTGAAAGAGAAAGGACTCAGATTCGTGGAGATAAACGTCGACGTTTATCCTCAGAGAGAGCAAGAGCTGATCGAGAGGACCGGAACGTCGTCGGTGCCTCAGATTTTCTTCAACGAGAAGCTATTCGGCGGTTTGGTGGCGCTGAATTCGCTGAGGAACAGCGGCGAGTTTGACCAGCGGTTGAAGGAAATGATCGGGTCGAAATGCCCCGACGACGCGCCCGCTTCGCCTGTTTACGGGTTTGATGATCTCGAGGAGGAATTGACGGACCAGATGATAGGGATCGTGAGGGTGTTGAGGCTGAGATTGCCGATTCAGGACCGTCTGATGAAGATGAAGATCGTGAAGAACTGCTTCGCCGGCGGCGAGATGGTGGAGGTCCTCATTCAGCAGTTGGACTGTGGCCGTAAACAGGCGGTTGAGATTGGAAGGCAACTGGCTAGGAGGCACTTCATTCATCACGTCTTTGGAGAAAATGAGTTTGAAGATGGAAACCATTTTTATCGATTCCTTGAGCATGAGCCATTTATCCCCAAATGCTATAATTTCCGAGGATCCATAAATGACTGTGAGCCCAAGCCTGCAGCTGAAGTTGGCCAAAGGCTCACCAAGATCATGTCAGCCATACTTGAGTCCTATGCCTCTGATGACAGGCGCCTACTTGATTACATTGGCATAAGTAACAGTGAGGAATTCCGAAGGTACATAAATTTGGTTCAAGAGCTTCACCGAGTAAACCTTTTTGAACTCTCGCCAAATGAGAGGCTAGCCTTCTTCTTGAACCTGTACAATGCCATGGTCATACATGCAGTTATCAGGGTAGGGCGTCCGCAAGGTGTCATTGAAAGGAGATCCTTTTACAATGACTTCCAGTATATAGTTGGAGGTTATTCTTATTCCCTTAGTAACATCAAAAATGGCATCCTCAGAAACAACAGGAGACCTCCTTATTCCCTAGTCAAGCCATTTGGCAATGGAGACAGCCGCATAGAGCTTGCTTGTGCTAAAGTGAATCCAATAATCCACTTTGGACTGTGCAATGGGACAAGGTCAAGCCCGACAGTAAGGTTCTTCTCACCCCAAGTAATTGAAGCTGAATTAAGATCTGCAGCAAGGGAGTTCTTTAAGAGTGGTGGAATGGAGGTGAACTTGGAGAAGAGGACTGTGTATCTCACCCAAATCATCAAATGGTTCAATAATGATTTTGGACAAGATAAAGACATTTTAGAGTGGATCCTGAATTACTTGGACCCAACTAGAGCAGGTCTTTTGACACATCTGTTGGGTGATGGAGGACCTATACATATTTCTTACCAGAACTATGATTGGTCCATGAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEP DUF547 Glutaredoxin

Protein Analysis

672

Amino Acids

76.01

Weight (kDa)

5.87

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 208 - 266 8.2e-16 Glutaredoxin
DEP PF00610 328 - 395 3.6e-19 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
DUF547 PF04784 474 - 599 1.3e-35 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11920
fragaria_vesca FvH4_4g36430
malus_domestica MD13G1009300.v1.1 MD16G1007300.v1.1
prunus_persica Prupe.1G343400_v2.0.a1
pyrus_communis pycom13g00790 pycom16g00690
rosa_chinensis RchiOBHm_Chr4g0446191
rosa_laevigata RLG00000005684
rosa_multiflora Rmu_sc0009254.1_g000004
rosa_roxburghii Rroxscaffold_5G00386580
rosa_rugosa Rorug04G0368300
rosa_samantha Rh4AG430300 Rh4BG439600 Rh4CG457000 Rh4DG438200
rosa_wichuraiana Rw4G036750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 188, 760
AatII GACGTC 1 cut(s) 192
Acc36I ACCTGC 1 cut(s) 1928
AccB1I GGYRCC 3 cut(s) 334, 769, 1329
AccI GTMKAC 1 cut(s) 714
AccII CGCG 1 cut(s) 893
AccIII TCCGGA 2 cut(s) 441, 666
AcoI YGGCCR 2 cut(s) 1078, 1270
AcsI RAATTY 4 cut(s) 404, 820, 1367, 1384
AcuI CTGAAG 2 cut(s) 497, 1284
AcvI CACGTG 1 cut(s) 232
AcyI GRCGYC 3 cut(s) 189, 1330, 1501
AfaI GTAC 2 cut(s) 1379, 1463
AfiI CCNNNNNNNGG 6 cut(s) 77, 380, 428, 648, 911, 1087
AflII CTTAAG 1 cut(s) 494
AjiI CACGTC 1 cut(s) 1138
AjnI CCWGG 2 cut(s) 340, 635
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 4 cut(s) 581, 614, 1609, 1647
Ama87I CYCGRG 3 cut(s) 20, 329, 926
Aor13HI TCCGGA 2 cut(s) 441, 666
AoxI GGCC 4 cut(s) 343, 556, 1078, 1270
ApeKI GCWGC 4 cut(s) 155, 595, 1259, 1784
ApoI RAATTY 4 cut(s) 404, 820, 1367, 1384
ArsI GACNNNNNNTTYG 4 cut(s) 491, 523, 592, 624
AseI ATTAAT 1 cut(s) 15
Asp700I GAANNNNTTC 2 cut(s) 797, 1028
AspLEI GCGC 3 cut(s) 817, 895, 1332
AspS9I GGNCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
AsuC2I CCSGG 2 cut(s) 215, 650
AsuHPI GGTGA 9 cut(s) 28, 583, 616, 1273, 1394, 1743, 1831, 1840, 1973
AsuNHI GCTAGC 1 cut(s) 1441
AvaI CYCGRG 3 cut(s) 20, 329, 926
AvaII GGWCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
BalI TGGCCA 1 cut(s) 1272
BamHI GGATCC 4 cut(s) 4, 297, 1229, 1908
BanI GGYRCC 3 cut(s) 334, 769, 1329
BanII GRGCYC 1 cut(s) 1251
BbrPI CACGTG 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 827
BbvI GCAGC 4 cut(s) 167, 607, 1271, 1796
BccI CCATC 4 cut(s) 555, 1039, 1157, 1958
BceAI ACGGC 5 cut(s) 193, 227, 397, 675, 1065
BciT130I CCWGG 2 cut(s) 342, 637
BcnI CCSGG 2 cut(s) 215, 650
BcoDI GTCTC 4 cut(s) 581, 614, 1609, 1647
BfaI CTAG 4 cut(s) 1116, 1442, 1631, 1932
BfmI CTRYAG 2 cut(s) 1257, 1782
BfoI RGCGCY 2 cut(s) 818, 1333
BfrI CTTAAG 1 cut(s) 494
BfuAI ACCTGC 1 cut(s) 1928
BglII AGATCT 1 cut(s) 1778
BisI GCNGC 8 cut(s) 68, 156, 596, 838, 1039, 1260, 1660, 1785
BlsI GCNGC 8 cut(s) 69, 157, 597, 839, 1040, 1261, 1661, 1786
Bme1390I CCNGG 4 cut(s) 215, 342, 637, 650
Bme18I GGWCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
BmeT110I CYCGRG 3 cut(s) 20, 329, 926
BmgBI CACGTC 1 cut(s) 1138
BmgT120I GGNCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
BmrFI CCNGG 4 cut(s) 215, 342, 637, 650
BmsI GCATC 1 cut(s) 1605
BmtI GCTAGC 1 cut(s) 1445
BpmI CTGGAG 1 cut(s) 619
Bpu10I CCTNAGC 1 cut(s) 827
BpuEI CTTGAG 2 cut(s) 1208, 1325
BpuMI CCSGG 2 cut(s) 215, 650
Bsa29I ATCGAT 1 cut(s) 1180
BsaAI YACGTR 1 cut(s) 232
BsaBI GATNNNNATC 2 cut(s) 956, 1013
BsaHI GRCGYC 3 cut(s) 189, 1330, 1501
BsaI GGTCTC 1 cut(s) 1609
BsaJI CCNNGG 6 cut(s) 132, 213, 330, 465, 1225, 1470
BsaWI WCCGGW 4 cut(s) 47, 441, 666, 755
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 6 cut(s) 77, 380, 428, 648, 911, 1087
Bse118I RCCGGY 2 cut(s) 421, 1034
Bse1I ACTGG 2 cut(s) 1116, 1546
Bse3DI GCAATG 2 cut(s) 1654, 1720
Bse8I GATNNNNATC 2 cut(s) 956, 1013
BseAI TCCGGA 2 cut(s) 441, 666
BseBI CCWGG 2 cut(s) 342, 637
BseCI ATCGAT 1 cut(s) 1180
BseDI CCNNGG 6 cut(s) 132, 213, 330, 465, 1225, 1470
BseGI GGATG 2 cut(s) 438, 1596
BseJI GATNNNNATC 2 cut(s) 956, 1013
BseLI CCNNNNNNNGG 6 cut(s) 77, 380, 428, 648, 911, 1087
BseMI GCAATG 2 cut(s) 1654, 1720
BseMII CTCAG 6 cut(s) 706, 740, 788, 818, 968, 1615
BseNI ACTGG 2 cut(s) 1116, 1546
BseRI GAGGAG 5 cut(s) 348, 351, 354, 454, 944
BseXI GCAGC 4 cut(s) 167, 607, 1271, 1796
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 1 cut(s) 893
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 345, 558, 1080, 1272
BshNI GGYRCC 3 cut(s) 334, 769, 1329
BshVI ATCGAT 1 cut(s) 1180
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 3 cut(s) 20, 329, 926
BslFI GGGAC 2 cut(s) 665, 1732
BslI CCNNNNNNNGG 6 cut(s) 77, 380, 428, 648, 911, 1087
BsmAI GTCTC 4 cut(s) 581, 614, 1609, 1647
BsmBI CGTCTC 1 cut(s) 581
BsmFI GGGAC 2 cut(s) 665, 1732
BsnI GGCC 4 cut(s) 345, 558, 1080, 1272
Bso31I GGTCTC 1 cut(s) 1609
BsoBI CYCGRG 3 cut(s) 20, 329, 926
Bsp1286I GDGCHC 2 cut(s) 231, 1251
Bsp13I TCCGGA 2 cut(s) 441, 666
Bsp1407I TGTACA 1 cut(s) 1461
Bsp19I CCATGG 1 cut(s) 1470
BspANI GGCC 4 cut(s) 345, 558, 1080, 1272
BspCNI CTCAG 6 cut(s) 705, 739, 787, 819, 969, 1614
BspDI ATCGAT 1 cut(s) 1180
BspEI TCCGGA 2 cut(s) 441, 666
BspFNI CGCG 1 cut(s) 893
BspHI TCATGA 1 cut(s) 349
BspMAI CTGCAG 2 cut(s) 1261, 1786
BspMI ACCTGC 1 cut(s) 1928
BspOI GCTAGC 1 cut(s) 1445
BspT107I GGYRCC 3 cut(s) 334, 769, 1329
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 1609
BsrDI GCAATG 2 cut(s) 1654, 1720
BsrFI RCCGGY 2 cut(s) 421, 1034
BsrGI TGTACA 1 cut(s) 1461
BsrI ACTGG 2 cut(s) 1116, 1546
BssAI RCCGGY 2 cut(s) 421, 1034
BssECI CCNNGG 6 cut(s) 132, 213, 330, 465, 1225, 1470
BssNI GRCGYC 3 cut(s) 189, 1330, 1501
BssT1I CCWWGG 2 cut(s) 132, 1470
Bst2UI CCWGG 2 cut(s) 342, 637
Bst4CI ACNGT 8 cut(s) 571, 998, 1076, 1244, 1361, 1710, 1738, 1840
Bst6I CTCTTC 4 cut(s) 213, 258, 440, 1826
BstACI GRCGYC 3 cut(s) 189, 1330, 1501
BstAFI CTTAAG 1 cut(s) 494
BstAUI TGTACA 1 cut(s) 1461
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 6 cut(s) 423, 897, 1036, 1257, 1443, 1671
BstDEI CTNAG 7 cut(s) 692, 726, 774, 827, 977, 1577, 1601
BstDSI CCRYGG 1 cut(s) 1470
BstF5I GGATG 2 cut(s) 438, 1596
BstFNI CGCG 1 cut(s) 893
BstH2I RGCGCY 2 cut(s) 818, 1333
BstHHI GCGC 3 cut(s) 817, 895, 1332
BstMAI GTCTC 4 cut(s) 581, 614, 1609, 1647
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 9 cut(s) 161, 325, 490, 601, 654, 823, 901, 982, 1035
BstNI CCWGG 2 cut(s) 342, 637
BstNSI RCATGY 2 cut(s) 421, 1484
BstSCI CCNGG 4 cut(s) 213, 340, 635, 648
BstSFI CTRYAG 2 cut(s) 1257, 1782
BstUI CGCG 1 cut(s) 893
BstV1I GCAGC 4 cut(s) 167, 607, 1271, 1796
BstX2I RGATCY 6 cut(s) 4, 297, 1229, 1526, 1778, 1908
BstYI RGATCY 6 cut(s) 4, 297, 1229, 1526, 1778, 1908
Bsu15I ATCGAT 1 cut(s) 1180
BsuRI GGCC 4 cut(s) 345, 558, 1080, 1272
BsuTUI ATCGAT 1 cut(s) 1180
BtgI CCRYGG 1 cut(s) 1470
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 2 cut(s) 438, 1596
BtsIMutI CAGTG 1 cut(s) 1366
BveI ACCTGC 1 cut(s) 1928
Cac8I GCNNGC 6 cut(s) 423, 897, 1036, 1257, 1443, 1671
CciI TCATGA 1 cut(s) 349
CfoI GCGC 3 cut(s) 817, 895, 1332
Cfr10I RCCGGY 2 cut(s) 421, 1034
Cfr13I GGNCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
ClaI ATCGAT 1 cut(s) 1180
CpoI CGGWCCG 1 cut(s) 664
CseI GACGC 2 cut(s) 899, 1490
Csp6I GTAC 2 cut(s) 1378, 1462
CspI CGGWCCG 1 cut(s) 664
CviAII CATG 8 cut(s) 311, 350, 418, 1193, 1291, 1471, 1481, 2008
CviQI GTAC 2 cut(s) 1378, 1462
DdeI CTNAG 7 cut(s) 692, 726, 774, 827, 977, 1577, 1601
DinI GGCGCC 1 cut(s) 1331
DrdI GACNNNNNNGTC 2 cut(s) 188, 760
DseDI GACNNNNNNGTC 2 cut(s) 188, 760
EaeI YGGCCR 2 cut(s) 1078, 1270
Eam1104I CTCTTC 4 cut(s) 213, 258, 440, 1826
EarI CTCTTC 4 cut(s) 213, 258, 440, 1826
EciI GGCGGA 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 132, 1470
Eco24I GRGCYC 1 cut(s) 1251
Eco31I GGTCTC 1 cut(s) 1609
Eco47I GGWCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
Eco57I CTGAAG 2 cut(s) 497, 1284
Eco72I CACGTG 1 cut(s) 232
Eco88I CYCGRG 3 cut(s) 20, 329, 926
EcoO109I RGGNCCY 2 cut(s) 1054, 1970
EcoRI GAATTC 2 cut(s) 820, 1367
EcoRII CCWGG 2 cut(s) 340, 635
EcoT14I CCWWGG 2 cut(s) 132, 1470
EcoT38I GRGCYC 1 cut(s) 1251
EgeI GGCGCC 1 cut(s) 1331
EheI GGCGCC 1 cut(s) 1331
ErhI CCWWGG 2 cut(s) 132, 1470
Esp3I CGTCTC 1 cut(s) 581
FaeI CATG 8 cut(s) 314, 353, 421, 1196, 1294, 1474, 1484, 2011
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FaqI GGGAC 2 cut(s) 665, 1732
FatI CATG 8 cut(s) 310, 349, 417, 1192, 1290, 1470, 1480, 2007
FauI CCCGC 1 cut(s) 904
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 8 cut(s) 68, 156, 596, 838, 1039, 1260, 1660, 1785
FokI GGATG 2 cut(s) 425, 1583
FriOI GRGCYC 1 cut(s) 1251
Fsp4HI GCNGC 8 cut(s) 68, 156, 596, 838, 1039, 1260, 1660, 1785
FspBI CTAG 4 cut(s) 1116, 1442, 1631, 1932
GlaI GCGC 3 cut(s) 816, 894, 1331
GluI GCNGC 8 cut(s) 68, 156, 596, 838, 1039, 1260, 1660, 1785
GsuI CTGGAG 1 cut(s) 619
HaeII RGCGCY 2 cut(s) 818, 1333
HaeIII GGCC 4 cut(s) 345, 558, 1080, 1272
HgaI GACGC 2 cut(s) 899, 1490
HhaI GCGC 3 cut(s) 817, 895, 1332
Hin1I GRCGYC 3 cut(s) 189, 1330, 1501
Hin1II CATG 8 cut(s) 314, 353, 421, 1196, 1294, 1474, 1484, 2011
Hin6I GCGC 3 cut(s) 815, 893, 1330
HinP1I GCGC 3 cut(s) 815, 893, 1330
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HphI GGTGA 9 cut(s) 28, 583, 616, 1273, 1394, 1743, 1831, 1840, 1973
Hpy166II GTNNAC 6 cut(s) 415, 715, 910, 1085, 1411, 1822
Hpy8I GTNNAC 6 cut(s) 415, 715, 910, 1085, 1411, 1822
HpyAV CCTTC 7 cut(s) 356, 378, 637, 853, 1098, 1368, 1456
HpyCH4III ACNGT 8 cut(s) 571, 998, 1076, 1244, 1361, 1710, 1738, 1840
HpyCH4IV ACGT 7 cut(s) 168, 189, 231, 711, 717, 761, 1137
HpyCH4V TGCA 6 cut(s) 314, 657, 1259, 1484, 1713, 1784
HpyF10VI GCNNNNNNNGC 9 cut(s) 161, 325, 490, 601, 654, 823, 901, 982, 1035
HpyF3I CTNAG 7 cut(s) 692, 726, 774, 827, 977, 1577, 1601
HpySE526I ACGT 7 cut(s) 168, 189, 231, 711, 717, 761, 1137
Hsp92I GRCGYC 3 cut(s) 189, 1330, 1501
Hsp92II CATG 8 cut(s) 314, 353, 421, 1196, 1294, 1474, 1484, 2011
HspAI GCGC 3 cut(s) 815, 893, 1330
KasI GGCGCC 1 cut(s) 1329
Kpn2I TCCGGA 2 cut(s) 441, 666
KroI GCCGGC 2 cut(s) 421, 1034
KroNI GCCGGC 2 cut(s) 423, 1036
LmnI GCTCC 6 cut(s) 152, 214, 226, 324, 592, 669
Lsp1109I GCAGC 4 cut(s) 167, 607, 1271, 1796
LweI GCATC 1 cut(s) 1605
MaeI CTAG 4 cut(s) 1116, 1442, 1631, 1932
MaeII ACGT 7 cut(s) 168, 189, 231, 711, 717, 761, 1137
MaeIII GTNAC 6 cut(s) 28, 244, 535, 565, 1355, 1580
MfeI CAATTG 1 cut(s) 643
MflI RGATCY 6 cut(s) 4, 297, 1229, 1526, 1778, 1908
MhlI GDGCHC 2 cut(s) 231, 1251
MlsI TGGCCA 1 cut(s) 1272
MluNI TGGCCA 1 cut(s) 1272
Mly113I GGCGCC 1 cut(s) 1330
MlyI GAGTC 5 cut(s) 71, 230, 616, 684, 1316
MmeI TCCRAC 5 cut(s) 204, 328, 599, 1050, 1537
Mox20I TGGCCA 1 cut(s) 1272
MreI CGCCGGCG 1 cut(s) 1034
MroI TCCGGA 2 cut(s) 441, 666
MroNI GCCGGC 2 cut(s) 421, 1034
MroXI GAANNNNTTC 2 cut(s) 797, 1028
MscI TGGCCA 1 cut(s) 1272
MseI TTAA 6 cut(s) 15, 138, 257, 495, 1775, 1800
Msp20I TGGCCA 1 cut(s) 1272
MspA1I CMGCKG 3 cut(s) 837, 853, 1262
MspCI CTTAAG 1 cut(s) 494
MspR9I CCNGG 4 cut(s) 215, 342, 637, 650
MunI CAATTG 1 cut(s) 643
MvaI CCWGG 2 cut(s) 342, 637
MvnI CGCG 1 cut(s) 893
MwoI GCNNNNNNNGC 9 cut(s) 161, 325, 490, 601, 654, 823, 901, 982, 1035
NaeI GCCGGC 2 cut(s) 423, 1036
NarI GGCGCC 1 cut(s) 1330
NciI CCSGG 2 cut(s) 215, 650
NcoI CCATGG 1 cut(s) 1470
NgoMIV GCCGGC 2 cut(s) 421, 1034
NheI GCTAGC 1 cut(s) 1441
NlaIII CATG 8 cut(s) 314, 353, 421, 1196, 1294, 1474, 1484, 2011
NmeAIII GCCGAG 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 2 cut(s) 421, 1484
PaeR7I CTCGAG 1 cut(s) 926
PagI TCATGA 1 cut(s) 349
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 1038
PdiI GCCGGC 2 cut(s) 423, 1036
PdmI GAANNNNTTC 2 cut(s) 797, 1028
PfeI GAWTC 5 cut(s) 281, 696, 988, 1182, 1687
PflFI GACNNNGTC 2 cut(s) 188, 1723
PkrI GCNGC 8 cut(s) 69, 157, 597, 839, 1040, 1261, 1661, 1786
PleI GAGTC 5 cut(s) 70, 229, 615, 684, 1315
PluTI GGCGCC 1 cut(s) 1333
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
PpsI GAGTC 5 cut(s) 70, 229, 615, 684, 1315
Ppu21I YACGTR 1 cut(s) 232
PpuMI RGGWCCY 2 cut(s) 1054, 1970
PshBI ATTAAT 1 cut(s) 15
Psp5II RGGWCCY 2 cut(s) 1054, 1970
Psp6I CCWGG 2 cut(s) 340, 635
PspCI CACGTG 1 cut(s) 232
PspGI CCWGG 2 cut(s) 340, 635
PspPI GGNCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
PspPPI RGGWCCY 2 cut(s) 1054, 1970
PstI CTGCAG 2 cut(s) 1261, 1786
PsuI RGATCY 6 cut(s) 4, 297, 1229, 1526, 1778, 1908
PsyI GACNNNGTC 2 cut(s) 188, 1723
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 2 cut(s) 1379, 1463
RsaNI GTAC 2 cut(s) 1378, 1462
Rsr2I CGGWCCG 1 cut(s) 664
RsrII CGGWCCG 1 cut(s) 664
SalI GTCGAC 1 cut(s) 713
SaqAI TTAA 6 cut(s) 15, 138, 257, 495, 1775, 1800
SatI GCNGC 8 cut(s) 68, 156, 596, 838, 1039, 1260, 1660, 1785
Sau96I GGNCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
SchI GAGTC 5 cut(s) 71, 230, 616, 684, 1316
ScrFI CCNGG 4 cut(s) 215, 342, 637, 650
SduI GDGCHC 2 cut(s) 231, 1251
SfaNI GCATC 1 cut(s) 1605
SfcI CTRYAG 2 cut(s) 1257, 1782
SfoI GGCGCC 1 cut(s) 1331
Sfr274I CTCGAG 1 cut(s) 926
SgrAI CRCCGGYG 1 cut(s) 1034
SgrDI CGTCGACG 1 cut(s) 713
SinI GGWCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
SlaI CTCGAG 1 cut(s) 926
SmlI CTYRAG 4 cut(s) 494, 926, 1187, 1304
SmoI CTYRAG 4 cut(s) 494, 926, 1187, 1304
SspDI GGCGCC 1 cut(s) 1329
SspMI CTAG 4 cut(s) 1116, 1442, 1631, 1932
StyD4I CCNGG 4 cut(s) 213, 340, 635, 648
StyI CCWWGG 2 cut(s) 132, 1470
TaaI ACNGT 8 cut(s) 571, 998, 1076, 1244, 1361, 1710, 1738, 1840
TaiI ACGT 7 cut(s) 171, 192, 234, 714, 720, 764, 1140
TaqI TCGA 5 cut(s) 714, 747, 875, 927, 1180
TatI WGTACW 1 cut(s) 1461
TauI GCSGC 4 cut(s) 70, 840, 1041, 1662
TfiI GAWTC 5 cut(s) 281, 696, 988, 1182, 1687
Tru1I TTAA 6 cut(s) 15, 138, 257, 495, 1775, 1800
Tru9I TTAA 6 cut(s) 15, 138, 257, 495, 1775, 1800
TscAI CASTG 1 cut(s) 1366
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 4 cut(s) 155, 595, 1259, 1784
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 5 cut(s) 338, 1019, 1025, 1117, 1121
TspGWI ACGGA 2 cut(s) 605, 956
TspRI CASTG 1 cut(s) 1366
Tth111I GACNNNGTC 2 cut(s) 188, 1723
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 9 cut(s) 639, 664, 753, 943, 994, 1054, 1924, 1970, 2004
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 4 cut(s) 404, 820, 1367, 1384
XceI RCATGY 2 cut(s) 421, 1484
XcmI CCANNNNNNNNNTGG 1 cut(s) 1553
XhoI CTCGAG 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 714
XmnI GAANNNNTTC 2 cut(s) 797, 1028
XspI CTAG 4 cut(s) 1116, 1442, 1631, 1932
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.