Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Reverse (-)

53947231 .. 53948987

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0368300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGGAGAGGCACGTTTGGGTGTCTCGGAACCGGTTCGGAATCCGACGAGCTCTTTCCGATTCGGGTCAAATTGAAACCAGAAAAGGAGCTCAAATTTGTGGGAGTTGCTGCTGGTGCTTACCATAGTCTTGCTCTGGCTGAGGACGAAAAAGCAGATTGGGGTTTTGAGGTTGAGATCGATCAGATAATGGAGAGATTGGGGCGGCGCCGGAACAACCTGCACATCGGGATCGAATCTGACTCGAGCTTAACCCCATTACCAGAGGAAGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEP DUF547 Glutaredoxin

Protein Analysis

93

Amino Acids

10.35

Weight (kDa)

4.68

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC1	PF00415	1 - 46	1.4e-10	Regulator of chromosome condensation (RCC1) repeat
WD40_RLD	PF25390	2 - 63	5.1e-06	RCC1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	208
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	3 cut(s)	52, 91, 249
AluI	AGCT	3 cut(s)	52, 91, 249
Alw21I	GWGCWC	2 cut(s)	54, 93
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	95
AsiGI	ACCGGT	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	54, 93
Bbv12I	GWGCWC	2 cut(s)	54, 93
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	111, 206
BlsI	GCNGC	2 cut(s)	112, 207
BmeT110I	CYCGRG	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	31, 209
Bpu10I	CCTNAGC	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	32
BseCI	ATCGAT	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	207
BshTI	ACCGGT	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	54, 93
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	33, 211
BsmAI	GTCTC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	54, 93
Bsp143I	GATC	3 cut(s)	177, 181, 231
BspACI	CCGC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	31, 209
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	3 cut(s)	177, 181, 231
BssNI	GRCGYC	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	180, 184, 234
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	177, 181, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	228
CfoI	GCGC	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	180
CspAI	ACCGGT	1 cut(s)	32
CviJI	RGCY	4 cut(s)	52, 91, 140, 249
CviKI_1	RGCY	4 cut(s)	52, 91, 140, 249
DdeI	CTNAG	1 cut(s)	141
DinI	GGCGCC	1 cut(s)	209
DpnI	GATC	3 cut(s)	179, 183, 233
DpnII	GATC	3 cut(s)	177, 181, 231
Ecl136II	GAGCTC	2 cut(s)	52, 91
Eco24I	GRGCYC	2 cut(s)	54, 93
Eco53kI	GAGCTC	2 cut(s)	52, 91
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	2 cut(s)	52, 91
EcoT38I	GRGCYC	2 cut(s)	54, 93
EgeI	GGCGCC	1 cut(s)	209
EheI	GGCGCC	1 cut(s)	209
FaiI	YATR	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	111, 206
FriOI	GRGCYC	2 cut(s)	54, 93
Fsp4HI	GCNGC	2 cut(s)	111, 206
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	2 cut(s)	111, 206
HaeII	RGCGCY	1 cut(s)	211
HapII	CCGG	2 cut(s)	33, 211
HhaI	GCGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HinfI	GANTC	4 cut(s)	41, 61, 236, 242
HpaII	CCGG	2 cut(s)	33, 211
Hpy188I	TCNGA	6 cut(s)	29, 40, 46, 60, 186, 241
Hpy188III	TCNNGA	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	208
HspAI	GCGC	1 cut(s)	208
KasI	GGCGCC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	177, 181, 231
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	46, 93, 99, 122, 224, 233, 276
Lsp1109I	GCAGC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	14
MalI	GATC	3 cut(s)	179, 183, 233
MboI	GATC	3 cut(s)	177, 181, 231
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	54, 93
MluCI	AATT	2 cut(s)	71, 95
Mly113I	GGCGCC	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	136, 163, 259
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	251
MspI	CCGG	2 cut(s)	33, 211
MwoI	GCNNNNNNNGC	1 cut(s)	116
NarI	GGCGCC	1 cut(s)	208
NdeII	GATC	3 cut(s)	177, 181, 231
NlaIV	GGNNCC	2 cut(s)	31, 209
PaeR7I	CTCGAG	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	41, 61, 236
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	112, 207
PleI	GAGTC	1 cut(s)	236
PluTI	GGCGCC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	2 cut(s)	54, 93
PspN4I	GGNNCC	2 cut(s)	31, 209
PspXI	VCTCGAGB	1 cut(s)	244
SacI	GAGCTC	2 cut(s)	54, 93
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	111, 206
Sau3AI	GATC	3 cut(s)	177, 181, 231
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	54, 93
SetI	ASST	6 cut(s)	17, 54, 93, 174, 222, 251
SfoI	GGCGCC	1 cut(s)	209
Sfr274I	CTCGAG	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	2 cut(s)	71, 95
SsiI	CCGC	1 cut(s)	205
SspDI	GGCGCC	1 cut(s)	207
SstI	GAGCTC	2 cut(s)	54, 93
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	180, 234, 245
TasI	AATT	2 cut(s)	71, 95
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	41, 61, 236
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseI	GCWGC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	95
XhoI	CTCGAG	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.