Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Forward (+)

450581 .. 453646

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3066 bp

ATGGGGGTCCAAGATTTCTGGGTTTTCATTTTTGTTATTGGGTTTTGCTTCCAAGCTCGGATTTTAAGCTCTCAAAACCTGACATGCAATCCCAACGATTTGAAAGCATTGGAGGATTTCAGGAACGGTATAGATTCTGTGATTGATGGGTGGGGCAGCAAATTTTCACCTGATTGCTGTAAATGGGTAGGCATCACTTGCAATTCTTCGTCGTCTCTCGGATTGAACTATTCCATTGATACTTATAGAGTGGTAAAACTGGAGCTTCCAAAGAGAAGGCTACTGGGAAATCTCTCTGCATCTTTGGGGACATTAGACCAGCTCAGAACCCTCAATCTCTCTCACAATTTCCTCAAGTACTCGCTTCCGATTTCGCTCTTCCATTTGCCAAATTTAGAGCTCTTAGACTTGAGTTCTAATTACTTTTCCGGCCCCATTCCTGTCGATATCGATTTGCCTTCAGTCCAGTTCATTGAAATTTCTCAAAACTTTTTGAATGGTTCCCTTCCAGCTAGCATCTGTGACAGTTCTACTCGGCTTCGAACTCTGAAGTTGGCTGTGAACTACTTCTCTGGTAACCTCCCACCAGGTCTTGGCAATTGTATTTCCTTGGAGCACCTCTGTCTAGCCATGAATAATTTCAATGGCAGTGTACCCGAAGGTATATTTCGTCTGCGAAAGCTAACCCAGTTGAACATGCAAGATAACAAGCTGTCAGGGGCCCTCAGCGAAGAATTCGGTAACCTCATTAACCTTGTTCGTTTGGATATCTCAACTAATGAGTTTTCAGGAACTATCCCAGATGTTTTCCACAGCCTTGGAAGATTACAGAATTTTGTAGCTCATTCAAATCGTTTTGGTGGTCGGATACCCCCTTCTTTGTCGAGTTCATCGACTATCACTTTGCTTAATTTGAAAAACAATTCGTTGCAGGGCACAATTGATCTTAATTGTTCAGCAATGACTAGTTTGACCTCTCTTGATCTCGGTTCCAATCGGTTTGATGGGCCTATTCCCTCCAATCTTCCCTCCTGTCAACATTTGAATACTGTCAATCTTGCCCGTAACAACTTCACTGGTGAAATCCCAGAAAGCTTCAAGAGTTTCCATAGCCTCTGTTACATCTCGCTGTCAAATTGCAGCCTTTCCAATATCTCTTCCGCCCTTCAAATTTTACAGCAGTGTCAGAACCTGACTACCTTGGTTCTCACCTTGAACTTCCGTGGCGAACAATTTCCTGCTGATCCAACCCTTCATTTTGAAAAGTTGAAGGTTCTTGTTATTGCAAACTGTAGGCTCACGGGTGTAATACCCCAATGGTTGAGTACTAGCAGCAGGTTGCAGTTGTTGGATATATCGTGGAACCAATTGGAAGGAACAATTCCAGTCTGGTTTGGTAATTTTAGCAGTCTTTTCTACTTGGACATGTCTAATAATTCCTTTACGGGGGAAATGCCGAGAAGCCTAACTGGACTCCCGAGCCTCATTAATGGGAGGATCTCCGTTGAGGAACCTTCCTATGATTTCCCTCTTTTCATGAAGAAGAATGTAAGTGCACGTGGGTTGCAGTACAATCAAGTTTCGAGCTTTCGGCCTACATTGGACTTTAGCAACAACAATCTTAGTGGACCAATCTGGCGAGAGTTTGGGAAACTGAAATCGCTTCATGTTTTGGATCTGAAGTGCAACAATCTATCAGGACCGATTCCGAGTAATTTATCTGGGATGGCCAGCTTAGAGACTCTGGATTTGTCTCATAACAAGCTTTCAGGGAACATACCGCCTTCGTTGGTCAACCTCAACTTCTTGTCCAAGTTTAATGTTGCAGACAATCAGTTATACGGGGTGATCCCTACAGGACCTCAGTTTTGGACCTTCCCAAATTCAAGCTTTGAAGGGAATAATCTTTGTGGCGACCATGCGCCCCCATGTCCATCAAATGTGCATTATCCCCTTGGGAAGCCCAGCAAAACAAGGAAAAATAGAGGAGTTGTTATTGGTATTGCTGTTGGAATTGTATTTGGAACAGCATTTGTTCTTGCTCTCATGTTCATAATTGTGGTGCGGGCACATAGCCGGAGAGAGGTTGATCCTGAAAGAGAGGACCACGATACCAACGAGAAGGATTTGGAAGAACTCGGGTCGAAACTAGTAGTTCTGTTCCAAAACAAGGATGCTAATAAAGAGCTCTCTCTTGATGACCTTCTACAATCTACCAACAATTTTGACCAAGCAAATATCATCGGTTGCGGGGGTTTTGGTCTGGTTTACAAGGCCAGCCTTCCTGATGGTAAGAAGGTTGCTATCAAGCGGCTTTCTGGTGACTGTGGCCAGATGGACAGAGAATTCTACGCTGAAGTTGAAACCTTGTCAAGAGCTCAACATCCAAATCTTGTACATCTTCAGGGTTATTGCACGTATAAAAGTGACAGGCTTTTGATATATTCTTACATGGAGAACGGTAGTCTGGATTACTGGTTACATGAGAAAACCGACGGTCCAACCTCTCTAGATTGGAATGTGAGGCTTAAGATTGCTCAAGGGGCGGCGAGAGGGCTTGCTTATTTGCACCAGTCATGCGAGCCCCACATCCTTCATCGGGATATAAAGTCAAGCAACATCCTTTTGGATGAGAATTTTAAAGCGCACTTGGCGGATTTTGGTCTTGCAAGGCTCATACACCCGTATGCTACTCATGTAACAACTGATCGTGTTGGGACATTAGGCTACATCCCTCCTGAGTACAGCCAAGCTTCTGTCGCTACTTACAAGGGTGATGTGTACAGTTTCGGGGTTGTTCTTTTGGAGCTGCTCACCGGAAAAAGGCCAATGGATATGTGCAAGCCAAGAGAATGTCGGGATTTGATATCATGGGCATTTCAGATGAAGAGGGAAAAGAGGGAAGGCGAGGTGTTTGATCCGTTCATTTGTGACAAGCAGCACGATGAGGAACTGTTGTGTGTTTTTGAGATTGCATGCCTTTGCTTAAGCGGAAGCCCGAAGGTGAGGCCTTCAACTCAGCAGCTAGTTACTTGGCTCGATAACATTAACACCAAGAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

1022

Amino Acids

113.63

Weight (kDa)

6.48

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 68	1.3e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	100 - 329	8.9e-08	Leucine-rich repeat region
LRR_8	PF13855	422 - 480	1.4e-09	Leucine rich repeat
LRR_8	PF13855	446 - 495	4.4e-06	Leucine rich repeat
LRR_8	PF13855	554 - 613	1.5e-06	Leucine rich repeat
Pkinase	PF00069	744 - 1009	8.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	746 - 966	7.2e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1326
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	8 cut(s)	1161, 1781, 2065, 2250, 2311, 2546, 2654, 2991
AclWI	GGATC	6 cut(s)	1238, 1505, 1683, 1843, 2084, 2912
AcoI	YGGCCR	2 cut(s)	1728, 2329
AcsI	RAATTY	9 cut(s)	161, 391, 477, 734, 832, 1170, 1882, 2345, 2635
AcuI	CTGAAG	5 cut(s)	444, 569, 1700, 2376, 2387
AcvI	CACGTG	1 cut(s)	1559
AfaI	GTAC	7 cut(s)	359, 654, 1327, 1571, 2397, 2744, 2783
AfiI	CCNNNNNNNGG	6 cut(s)	593, 1446, 2083, 2170, 2599, 2823
AflII	CTTAAG	2 cut(s)	2528, 2986
AflIII	ACRYGT	1 cut(s)	1425
AhlI	ACTAGT	2 cut(s)	965, 2149
AjnI	CCWGG	1 cut(s)	586
Alw21I	GWGCWC	5 cut(s)	402, 618, 1558, 2190, 2380
Alw26I	GTCTC	3 cut(s)	219, 1733, 1758
Alw44I	GTGCAC	1 cut(s)	1554
AlwI	GGATC	6 cut(s)	1238, 1505, 1683, 1843, 2084, 2912
AlwNI	CAGNNNCTG	1 cut(s)	1192
Ama87I	CYCGRG	2 cut(s)	1477, 2138
AoxI	GGCC	9 cut(s)	430, 720, 1007, 1592, 1728, 2274, 2329, 2825, 3008
ApaI	GGGCCC	1 cut(s)	724
ApaLI	GTGCAC	1 cut(s)	1554
ApeKI	GCWGC	6 cut(s)	156, 1140, 1332, 2809, 2938, 3022
ApoI	RAATTY	9 cut(s)	161, 391, 477, 734, 832, 1170, 1882, 2345, 2635
ArsI	GACNNNNNNTTYG	6 cut(s)	886, 918, 1732, 1764, 1851, 1883
AseI	ATTAAT	1 cut(s)	1488
Asp700I	GAANNNNTTC	3 cut(s)	566, 638, 1233
AspLEI	GCGC	2 cut(s)	1924, 2647
AsuHPI	GGTGA	8 cut(s)	159, 1091, 1201, 1858, 2333, 2786, 2806, 3016
AsuII	TTCGAA	1 cut(s)	541
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	2 cut(s)	1477, 2138
AvaII	GGWCC	7 cut(s)	7, 1628, 1700, 1859, 1872, 2104, 2498
BaeGI	GKGCMC	4 cut(s)	724, 938, 1558, 2071
BalI	TGGCCA	2 cut(s)	1730, 2331
BanII	GRGCYC	5 cut(s)	402, 724, 2190, 2380, 2586
BbrPI	CACGTG	1 cut(s)	1559
Bbv12I	GWGCWC	5 cut(s)	402, 618, 1558, 2190, 2380
BbvCI	CCTCAGC	1 cut(s)	725
BbvI	GCAGC	6 cut(s)	168, 1152, 1344, 2796, 2950, 3034
BccI	CCATC	6 cut(s)	140, 998, 1720, 1942, 2282, 2329
BciT130I	CCWGG	1 cut(s)	588
BciVI	GTATCC	1 cut(s)	861
BcoDI	GTCTC	3 cut(s)	219, 1733, 1758
BcuI	ACTAGT	2 cut(s)	965, 2149
BfaI	CTAG	8 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026, 3064
BfmI	CTRYAG	2 cut(s)	1291, 1854
BfrI	CTTAAG	2 cut(s)	2528, 2986
BfuAI	ACCTGC	1 cut(s)	1326
BfuI	GTATCC	1 cut(s)	861
BisI	GCNGC	8 cut(s)	157, 1141, 1333, 2312, 2547, 2810, 2939, 3023
BlsI	GCNGC	8 cut(s)	158, 1142, 1334, 2313, 2548, 2811, 2940, 3024
BmcAI	AGTACT	2 cut(s)	359, 1327
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	7 cut(s)	7, 1628, 1700, 1859, 1872, 2104, 2498
BmeT110I	CYCGRG	2 cut(s)	1477, 2138
BmiI	GGNNCC	8 cut(s)	8, 433, 502, 721, 722, 991, 1364, 1512
BmrFI	CCNGG	1 cut(s)	588
BmrI	ACTGGG	2 cut(s)	293, 682
BmsI	GCATC	4 cut(s)	201, 308, 525, 2164
BmtI	GCTAGC	1 cut(s)	516
BmuI	ACTGGG	2 cut(s)	293, 682
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	725
Bpu14I	TTCGAA	1 cut(s)	541
BpuEI	CTTGAG	3 cut(s)	338, 430, 2523
Bsa29I	ATCGAT	1 cut(s)	450
BsaAI	YACGTR	2 cut(s)	1559, 2418
BsaJI	CCNNGG	5 cut(s)	609, 817, 1200, 1222, 1954
BsaWI	WCCGGW	1 cut(s)	2816
Bsc4I	CCNNNNNNNGG	6 cut(s)	593, 1446, 2083, 2170, 2599, 2823
Bse1I	ACTGG	9 cut(s)	264, 288, 466, 688, 1081, 1385, 1474, 2480, 2572
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	5 cut(s)	609, 817, 1200, 1222, 1954
BseGI	GGATG	7 cut(s)	1731, 2179, 2383, 2589, 2619, 2635, 2730
BseLI	CCNNNNNNNGG	6 cut(s)	593, 1446, 2083, 2170, 2599, 2823
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	5 cut(s)	337, 739, 1877, 2730, 3032
BseNI	ACTGG	9 cut(s)	264, 288, 466, 688, 1081, 1385, 1474, 2480, 2572
BseRI	GAGGAG	1 cut(s)	2001
BseSI	GKGCMC	4 cut(s)	724, 938, 1558, 2071
BseXI	GCAGC	6 cut(s)	168, 1152, 1344, 2796, 2950, 3034
BseYI	CCCAGC	1 cut(s)	1964
BshFI	GGCC	9 cut(s)	432, 722, 1009, 1594, 1730, 2276, 2331, 2827, 3010
BshVI	ATCGAT	1 cut(s)	450
BsiHKAI	GWGCWC	5 cut(s)	402, 618, 1558, 2190, 2380
BsiHKCI	CYCGRG	2 cut(s)	1477, 2138
BsiSI	CCGG	3 cut(s)	429, 2077, 2817
BslFI	GGGAC	2 cut(s)	322, 2731
BslI	CCNNNNNNNGG	6 cut(s)	593, 1446, 2083, 2170, 2599, 2823
BsmAI	GTCTC	3 cut(s)	219, 1733, 1758
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	322, 2731
BsnI	GGCC	9 cut(s)	432, 722, 1009, 1594, 1730, 2276, 2331, 2827, 3010
BsoBI	CYCGRG	2 cut(s)	1477, 2138
Bsp119I	TTCGAA	1 cut(s)	541
Bsp120I	GGGCCC	1 cut(s)	720
Bsp1286I	GDGCHC	9 cut(s)	402, 618, 724, 938, 1558, 2071, 2190, 2380, 2586
Bsp1407I	TGTACA	2 cut(s)	2395, 2781
Bsp143I	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
BspACI	CCGC	8 cut(s)	1161, 1781, 2065, 2250, 2311, 2546, 2654, 2991
BspANI	GGCC	9 cut(s)	432, 722, 1009, 1594, 1730, 2276, 2331, 2827, 3010
BspCNI	CTCAG	5 cut(s)	336, 738, 1876, 2731, 3031
BspDI	ATCGAT	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	1536
BspLI	GGNNCC	8 cut(s)	8, 433, 502, 721, 722, 991, 1364, 1512
BspMI	ACCTGC	1 cut(s)	1326
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	6 cut(s)	1238, 1505, 1683, 1843, 2084, 2912
BspQI	GCTCTTC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	541
BspTI	CTTAAG	2 cut(s)	2528, 2986
BsrDI	GCAATG	1 cut(s)	966
BsrGI	TGTACA	2 cut(s)	2395, 2781
BsrI	ACTGG	9 cut(s)	264, 288, 466, 688, 1081, 1385, 1474, 2480, 2572
BssECI	CCNNGG	5 cut(s)	609, 817, 1200, 1222, 1954
BssMI	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
BssT1I	CCWWGG	4 cut(s)	609, 817, 1200, 1954
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	9 cut(s)	128, 527, 1051, 1292, 2327, 2462, 2498, 2786, 2955
Bst6I	CTCTTC	3 cut(s)	383, 1162, 2882
BstAFI	CTTAAG	2 cut(s)	2528, 2986
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstAUI	TGTACA	2 cut(s)	2395, 2781
BstBAI	YACGTR	2 cut(s)	1559, 2418
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	8 cut(s)	514, 1732, 2067, 2278, 2559, 2582, 2843, 2977
BstDEI	CTNAG	8 cut(s)	323, 403, 725, 1622, 1735, 1863, 2739, 3018
BstDSI	CCRYGG	1 cut(s)	1222
BstEII	GGTNACC	2 cut(s)	575, 740
BstF5I	GGATG	7 cut(s)	1731, 2179, 2383, 2589, 2619, 2635, 2730
BstHHI	GCGC	2 cut(s)	1924, 2647
BstKTI	GATC	9 cut(s)	946, 985, 1246, 1500, 1678, 1851, 2092, 2710, 2920
BstMAI	GTCTC	3 cut(s)	219, 1733, 1758
BstMBI	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 2543, 2651, 2759
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	4 cut(s)	87, 700, 1429, 2979
BstPI	GGTNACC	2 cut(s)	575, 740
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	2 cut(s)	1291, 1854
BstSLI	GKGCMC	4 cut(s)	724, 938, 1558, 2071
BstV1I	GCAGC	6 cut(s)	168, 1152, 1344, 2796, 2950, 3034
BstX2I	RGATCY	2 cut(s)	1497, 1675
BstXI	CCANNNNNNTGG	1 cut(s)	818
BstYI	RGATCY	2 cut(s)	1497, 1675
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	9 cut(s)	432, 722, 1009, 1594, 1730, 2276, 2331, 2827, 3010
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	1222
BtsCI	GGATG	7 cut(s)	1731, 2179, 2383, 2589, 2619, 2635, 2730
BtsI	GCAGTG	2 cut(s)	655, 1187
BtsIMutI	CAGTG	3 cut(s)	655, 1074, 1187
BveI	ACCTGC	1 cut(s)	1326
Cac8I	GCNNGC	8 cut(s)	514, 1732, 2067, 2278, 2559, 2582, 2843, 2977
CaiI	CAGNNNCTG	1 cut(s)	1192
CciI	TCATGA	1 cut(s)	1536
CfoI	GCGC	2 cut(s)	1924, 2647
ClaI	ATCGAT	1 cut(s)	450
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	7 cut(s)	358, 653, 1326, 1570, 2396, 2743, 2782
CspCI	CAANNNNNGTGG	2 cut(s)	1606, 1641
CviQI	GTAC	7 cut(s)	358, 653, 1326, 1570, 2396, 2743, 2782
DdeI	CTNAG	8 cut(s)	323, 403, 725, 1622, 1735, 1863, 2739, 3018
DpnI	GATC	9 cut(s)	945, 984, 1245, 1499, 1677, 1850, 2091, 2709, 2919
DpnII	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
DraI	TTTAAA	1 cut(s)	2641
EaeI	YGGCCR	2 cut(s)	1728, 2329
Eam1104I	CTCTTC	3 cut(s)	383, 1162, 2882
EarI	CTCTTC	3 cut(s)	383, 1162, 2882
EciI	GGCGGA	2 cut(s)	1150, 2669
Ecl136II	GAGCTC	3 cut(s)	400, 2188, 2378
Eco130I	CCWWGG	4 cut(s)	609, 817, 1200, 1954
Eco147I	AGGCCT	1 cut(s)	3010
Eco24I	GRGCYC	5 cut(s)	402, 724, 2190, 2380, 2586
Eco32I	GATATC	3 cut(s)	448, 769, 2868
Eco47I	GGWCC	7 cut(s)	7, 1628, 1700, 1859, 1872, 2104, 2498
Eco53kI	GAGCTC	3 cut(s)	400, 2188, 2378
Eco57I	CTGAAG	5 cut(s)	444, 569, 1700, 2376, 2387
Eco72I	CACGTG	1 cut(s)	1559
Eco88I	CYCGRG	2 cut(s)	1477, 2138
Eco91I	GGTNACC	2 cut(s)	575, 740
EcoICRI	GAGCTC	3 cut(s)	400, 2188, 2378
EcoO109I	RGGNCCY	3 cut(s)	720, 721, 1859
EcoO65I	GGTNACC	2 cut(s)	575, 740
EcoRI	GAATTC	2 cut(s)	734, 2345
EcoRII	CCWGG	1 cut(s)	586
EcoRV	GATATC	3 cut(s)	448, 769, 2868
EcoT14I	CCWWGG	4 cut(s)	609, 817, 1200, 1954
EcoT38I	GRGCYC	5 cut(s)	402, 724, 2190, 2380, 2586
ErhI	CCWWGG	4 cut(s)	609, 817, 1200, 1954
Esp3I	CGTCTC	1 cut(s)	219
FaqI	GGGAC	2 cut(s)	322, 2731
FauI	CCCGC	2 cut(s)	2058, 2243
Fnu4HI	GCNGC	8 cut(s)	157, 1141, 1333, 2312, 2547, 2810, 2939, 3023
FokI	GGATG	7 cut(s)	1738, 2186, 2370, 2576, 2606, 2642, 2717
FriOI	GRGCYC	5 cut(s)	402, 724, 2190, 2380, 2586
Fsp4HI	GCNGC	8 cut(s)	157, 1141, 1333, 2312, 2547, 2810, 2939, 3023
FspBI	CTAG	8 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026, 3064
GlaI	GCGC	2 cut(s)	1923, 2646
GluI	GCNGC	8 cut(s)	157, 1141, 1333, 2312, 2547, 2810, 2939, 3023
GsaI	CCCAGC	1 cut(s)	1968
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	9 cut(s)	432, 722, 1009, 1594, 1730, 2276, 2331, 2827, 3010
HapII	CCGG	3 cut(s)	429, 2077, 2817
HhaI	GCGC	2 cut(s)	1924, 2647
Hin6I	GCGC	2 cut(s)	1922, 2645
HinP1I	GCGC	2 cut(s)	1922, 2645
HincII	GTYRAC	2 cut(s)	1037, 1795
HindII	GTYRAC	2 cut(s)	1037, 1795
HindIII	AAGCTT	4 cut(s)	1093, 1763, 1888, 2751
HinfI	GANTC	4 cut(s)	134, 1473, 1705, 1741
HpaII	CCGG	3 cut(s)	429, 2077, 2817
HphI	GGTGA	8 cut(s)	159, 1091, 1201, 1858, 2333, 2786, 2806, 3016
Hpy166II	GTNNAC	8 cut(s)	562, 653, 1037, 1556, 1628, 1795, 2269, 2782
Hpy8I	GTNNAC	8 cut(s)	562, 653, 1037, 1556, 1628, 1795, 2269, 2782
Hpy99I	CGWCG	2 cut(s)	214, 2498
HpyCH4III	ACNGT	9 cut(s)	128, 527, 1051, 1292, 2327, 2462, 2498, 2786, 2955
HpyCH4IV	ACGT	2 cut(s)	1558, 2417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 2543, 2651, 2759
HpyF3I	CTNAG	8 cut(s)	323, 403, 725, 1622, 1735, 1863, 2739, 3018
HpySE526I	ACGT	2 cut(s)	1558, 2417
HspAI	GCGC	2 cut(s)	1922, 2645
Kzo9I	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	3 cut(s)	262, 613, 2806
Lsp1109I	GCAGC	6 cut(s)	168, 1152, 1344, 2796, 2950, 3034
LweI	GCATC	4 cut(s)	201, 308, 525, 2164
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	8 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026, 3064
MaeII	ACGT	2 cut(s)	1558, 2417
MalI	GATC	9 cut(s)	945, 984, 1245, 1499, 1677, 1850, 2091, 2709, 2919
MboI	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
MfeI	CAATTG	3 cut(s)	598, 939, 1367
MflI	RGATCY	2 cut(s)	1497, 1675
MhlI	GDGCHC	9 cut(s)	402, 618, 724, 938, 1558, 2071, 2190, 2380, 2586
MlsI	TGGCCA	2 cut(s)	1730, 2331
MluNI	TGGCCA	2 cut(s)	1730, 2331
MlyI	GAGTC	2 cut(s)	1467, 1735
MmeI	TCCRAC	5 cut(s)	845, 1271, 1329, 1990, 2525
Mox20I	TGGCCA	2 cut(s)	1730, 2331
MroXI	GAANNNNTTC	3 cut(s)	566, 638, 1233
MscI	TGGCCA	2 cut(s)	1730, 2331
MslI	CAYNNNNRTG	2 cut(s)	2057, 2685
Msp20I	TGGCCA	2 cut(s)	1730, 2331
MspCI	CTTAAG	2 cut(s)	2528, 2986
MspI	CCGG	3 cut(s)	429, 2077, 2817
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	3 cut(s)	598, 939, 1367
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	4 cut(s)	198, 2543, 2651, 2759
NdeII	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
NheI	GCTAGC	1 cut(s)	512
NlaIV	GGNNCC	8 cut(s)	8, 433, 502, 721, 722, 991, 1364, 1512
NmeAIII	GCCGAG	2 cut(s)	514, 1482
NmuCI	GTSAC	4 cut(s)	521, 2321, 2426, 2930
NspI	RCATGY	4 cut(s)	87, 700, 1429, 2979
NspV	TTCGAA	1 cut(s)	541
PaeI	GCATGC	1 cut(s)	2979
PagI	TCATGA	1 cut(s)	1536
PceI	AGGCCT	1 cut(s)	3010
PciI	ACATGT	1 cut(s)	1425
PciSI	GCTCTTC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	2 cut(s)	890, 2115
PdmI	GAANNNNTTC	3 cut(s)	566, 638, 1233
PfeI	GAWTC	2 cut(s)	134, 1705
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	8 cut(s)	158, 1142, 1334, 2313, 2548, 2811, 2940, 3024
PleI	GAGTC	2 cut(s)	1467, 1735
PmaCI	CACGTG	1 cut(s)	1559
PmlI	CACGTG	1 cut(s)	1559
PpsI	GAGTC	2 cut(s)	1467, 1735
Ppu21I	YACGTR	2 cut(s)	1559, 2418
PpuMI	RGGWCCY	1 cut(s)	1859
PscI	ACATGT	1 cut(s)	1425
PshBI	ATTAAT	1 cut(s)	1488
Psp124BI	GAGCTC	3 cut(s)	402, 2190, 2380
Psp5II	RGGWCCY	1 cut(s)	1859
Psp6I	CCWGG	1 cut(s)	586
PspCI	CACGTG	1 cut(s)	1559
PspEI	GGTNACC	2 cut(s)	575, 740
PspFI	CCCAGC	1 cut(s)	1964
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	8 cut(s)	8, 433, 502, 721, 722, 991, 1364, 1512
PspOMI	GGGCCC	1 cut(s)	720
PspPPI	RGGWCCY	1 cut(s)	1859
PstNI	CAGNNNCTG	1 cut(s)	1192
PsuI	RGATCY	2 cut(s)	1497, 1675
RsaI	GTAC	7 cut(s)	359, 654, 1327, 1571, 2397, 2744, 2783
RsaNI	GTAC	7 cut(s)	358, 653, 1326, 1570, 2396, 2743, 2782
RseI	CAYNNNNRTG	2 cut(s)	2057, 2685
SacI	GAGCTC	3 cut(s)	402, 2190, 2380
SapI	GCTCTTC	1 cut(s)	383
SatI	GCNGC	8 cut(s)	157, 1141, 1333, 2312, 2547, 2810, 2939, 3023
Sau3AI	GATC	9 cut(s)	943, 982, 1243, 1497, 1675, 1848, 2089, 2707, 2917
ScaI	AGTACT	2 cut(s)	359, 1327
SchI	GAGTC	2 cut(s)	1467, 1735
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	9 cut(s)	402, 618, 724, 938, 1558, 2071, 2190, 2380, 2586
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	201, 308, 525, 2164
SfcI	CTRYAG	2 cut(s)	1291, 1854
SfuI	TTCGAA	1 cut(s)	541
SinI	GGWCC	7 cut(s)	7, 1628, 1700, 1859, 1872, 2104, 2498
SmiMI	CAYNNNNRTG	2 cut(s)	2057, 2685
SmlI	CTYRAG	5 cut(s)	353, 409, 2528, 2538, 2986
SmoI	CTYRAG	5 cut(s)	353, 409, 2528, 2538, 2986
SpeI	ACTAGT	2 cut(s)	965, 2149
SphI	GCATGC	1 cut(s)	2979
SseBI	AGGCCT	1 cut(s)	3010
SsiI	CCGC	8 cut(s)	1161, 1781, 2065, 2250, 2311, 2546, 2654, 2991
SspMI	CTAG	8 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026, 3064
SstI	GAGCTC	3 cut(s)	402, 2190, 2380
StuI	AGGCCT	1 cut(s)	3010
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	4 cut(s)	609, 817, 1200, 1954
TaaI	ACNGT	9 cut(s)	128, 527, 1051, 1292, 2327, 2462, 2498, 2786, 2955
TaiI	ACGT	2 cut(s)	1561, 2420
TaqI	TCGA	8 cut(s)	444, 450, 541, 884, 893, 1583, 2144, 3039
TaqII	GACCGA	1 cut(s)	1717
TatI	WGTACW	6 cut(s)	357, 1325, 1569, 2395, 2742, 2781
TauI	GCSGC	2 cut(s)	2314, 2549
TfiI	GAWTC	2 cut(s)	134, 1705
TscAI	CASTG	3 cut(s)	655, 1081, 1187
TseFI	GTSAC	4 cut(s)	521, 2321, 2426, 2930
TseI	GCWGC	6 cut(s)	156, 1140, 1332, 2809, 2938, 3022
Tsp45I	GTSAC	4 cut(s)	521, 2321, 2426, 2930
TspGWI	ACGGA	3 cut(s)	1211, 1492, 2910
TspRI	CASTG	3 cut(s)	655, 1081, 1187
Van91I	CCANNNNNTGG	1 cut(s)	593
Vha464I	CTTAAG	2 cut(s)	2528, 2986
VneI	GTGCAC	1 cut(s)	1554
VpaK11BI	GGWCC	7 cut(s)	7, 1628, 1700, 1859, 1872, 2104, 2498
VspI	ATTAAT	1 cut(s)	1488
XapI	RAATTY	9 cut(s)	161, 391, 477, 734, 832, 1170, 1882, 2345, 2635
XbaI	TCTAGA	1 cut(s)	2509
XceI	RCATGY	4 cut(s)	87, 700, 1429, 2979
XmnI	GAANNNNTTC	3 cut(s)	566, 638, 1233
XspI	CTAG	8 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026, 3064
ZrmI	AGTACT	2 cut(s)	359, 1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.