Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8048352.1

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 456

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8048352.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

gctcctgcttccctatgatactcatgtaacaactgatcttgttgggacattgggctacattcctcctgagtatggccaagcctctgttgctacttacaagggtgatatatacagttttggggttgttcttttggagcttctaactggaaaaaggcctatggatatgtgcaagccaaaaggagctcgggatttgatctcttgggtgtttcagatgaagagggagaggagggaaactgaagtgtttgctccagtcatttatgacaagcagagagagccggagcttttgtgtgtttttgagattgcattgctttgcttaagcggatgccctaaggtgagaccttcaactcagcagctagtttcttggctcgataatatcaacatcaaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

129

Amino Acids

14.66

Weight (kDa)

6.77

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	343
AluBI	AGCT	4 cut(s)	137, 183, 281, 353
AluI	AGCT	4 cut(s)	137, 183, 281, 353
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	74, 153
ApeKI	GCWGC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	114, 344
AvaI	CYCGRG	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BalI	TGGCCA	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	354, 389
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	149, 249
Bse21I	CCTNAGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	58, 360
BseNI	ACTGG	2 cut(s)	149, 249
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	362
BshFI	GGCC	2 cut(s)	76, 155
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	76, 155
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	35, 193
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	2 cut(s)	76, 155
BspCNI	CTCAG	2 cut(s)	59, 359
BspTI	CTTAAG	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	149, 249
BssMI	GATC	2 cut(s)	35, 193
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	67, 328, 346
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	38, 196
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	2 cut(s)	35, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 272
BstV1I	GCAGC	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	76, 155
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	171
CviAII	CATG	1 cut(s)	24
DdeI	CTNAG	3 cut(s)	67, 328, 346
DpnI	GATC	2 cut(s)	37, 195
DpnII	GATC	2 cut(s)	35, 193
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	1 cut(s)	27
FaiI	YATR	8 cut(s)	16, 25, 73, 108, 110, 159, 165, 259
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	354, 389
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	76, 155
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	1 cut(s)	27
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	114, 344
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	66, 186
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	169, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 272
HpyF3I	CTNAG	3 cut(s)	67, 328, 346
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	35, 193
LmnI	GCTCC	5 cut(s)	7, 134, 180, 251, 278
LpnPI	CCDG	5 cut(s)	18, 79, 130, 262, 289
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	2 cut(s)	354, 389
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	2 cut(s)	37, 195
MboI	GATC	2 cut(s)	35, 193
MboII	GAAGA	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	76
MluNI	TGGCCA	1 cut(s)	76
MnlI	CCTC	5 cut(s)	73, 92, 211, 217, 220
Mox20I	TGGCCA	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	76
MseI	TTAA	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	76
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	87, 272
NdeII	GATC	2 cut(s)	35, 193
NlaIII	CATG	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	35, 193
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	6 cut(s)	139, 185, 283, 334, 341, 355
SfaNI	GCATC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	319
SspMI	CTAG	2 cut(s)	354, 389
SstI	GAGCTC	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	228
Vha464I	CTTAAG	1 cut(s)	314
XspI	CTAG	2 cut(s)	354, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.