Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Forward (+)

614714 .. 618801

Gene Structure 4088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGAATGTTCAAGATTTTTGGGTGGTTATCTTTGTCATTGGCTTTTGCTTCCAGCCACCAGTTTTGAGCTCTCAGAACCTGACCTGCAATCTGAATGATTTGAATGCATTGGAGGAGTTCATGGGTGGTCTGAAAAGTGTCATTGGCGGTTGGGGCAAGAATTTCTCTGATGATTGCTGTAAATGGGCAGGTATTACTTGCAACTCTTCGTTCTCTCTTGGATTGGATGATTCTGTTGATACTTACAGAGTGGTTGAGTTGGATGTTTCGAGTAAAAAAATTATTGGGAATCTCTCTGAATCTTTGGGAAATTTGGAACAACTTAGATCCCTCAATCTTTCTCACAACTTCCTTAAAAACTCACTTCCTGCCTCACTGTTCCAATTGCCAAATTTAGAGTACTTGGACTTGAGTTCTAACGACTTTTCTGGCCCCATTCCAGTTGATATTAATTTACCTTCACTTCTGTTCCTTGATATCTCTCAAAACTTCTTGAATGGTTCTATTCCACAAAGCATCTGTGCAAGTTCTACTGGGCTTCAGGTACTGAAGTTGGCTGTGAACTACTTGTCTGGTACTCTACCAGCAAGTCTTGGAAACTGTAGTTCCTTGGAGGACCTCTGTCTCCTCACGAATAATCTCTCTGGTGGTGTACCTGAGGGTATATATCAGCTGCAAAATCTGATCAGATTGACTATTCAAGATAACAAGCTTACTGGGCCGCTGAGCAAAGAAGTTGGTAACCTGATTAACCTTAATGGTTTGGATATCTCAACAAATTGGTTTTCAGGGACTATTCCGGATGTTTTCCACAGCCTTGGAAGATTACAGTATTTTGTTGCTCATTCCAATAATTTCAGTGGTGGGATACCTCCTTCCTTGTCAAGTTCCCCAAATATCTCTTTGCTTAATGTGAGAAACAATTCATTGGAGGGTCCAATTGATCTAAATTGTTCAGCAATGACAGGTTTAGCCTCTCTTGATCTAGGTTCAAACCAGTTTTCTGGGGAAATTCCATCCAATCTTCCCTCTTGTCGGCATTTGAATAATATAAATCTTGCCCGGAACAACTTGAGTGGCCCAATACCTGACAGCTTCAAGGATTTTCATACTCTCAATTACCTCTCACTTTCGAACTCCAGCCATTCTAATCTATCATCTGCCCTTCAGATTTTACAGCAGTGTCAGAATCTAACAACTTTGGTTCTCACCATGAACTTCTATGGTGAAGAATTGCCTGCTGATCCAAACCTTCATTTTGCAAAGTTGAAGGTTCTCATTATTGCAAACAGTAGGCTCACAGGTTCATTACCCCAGTGGTTGAGTAAGAGCAGCAGATTGCAGTTATTGGATATATCCTGGAACTGCTTGGAAGGTACAGTTCCAGCTTGGTTTGGCAATTTTACTAGTCTCTTCTACTTGGACGTATCAAACAATTCTTTTACTGGGGATATCCCGAGAAGCTTAACTGGACTACAGAGCCTCATTTATTGGAATGTTTCCAAGGTTCAGGAACCTTCCCCTGATTTTCCTCTTTTCCAGAAAAAGAATGTAAGTGCAAGGGGATTGCAGTACAATCAAGTTTGGAGCTTTCCACCGACGCCGGCACTCGGCAACAATAATTTGAGTGGACAGATCTGGCCAGAGTTTGGGAACCTGAAATCCCTTCATGTATTTGATTTAAAATTCAACAATTTATCTGGACCAATTCCAAGTTCTCTTGCTAATATGACCAGCTTAGAGGCTCTGGATTTGTCTCATAACAAGCTTTCAGGAATAATACCCAGTTCACTGACTCGCCTCAGTTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTAGAGGGGGCGATTCCTAGTGGAGTTCAATTTGGGACCTTCCCAAATTCAAGCTTTGAAGGGAATAGTCTTTGTGGTGACCTTGCTTCTCCATGTCCATCAAAGGTGAATACTTCTCCCGTTCAAACCAGAAAATCAAGACGAGAATTAGGAGGAGTTTATATAGGAATAGCTGTGGGATTTATTACATATTCCACTAGTGAGCATTCCGAGGAATTGACATTGAGGAGAACTGGGATAAGGTTAAGACCATATTTGTCCCAACGGGAGATTCCCTTTCACCAGATATATCTGCTCCACTTGTTGCAACCCTTCCCTTTGGAGGTAATGCCTTTATTAAGAGCAAAATTGAGGAGTTTATCAAGTCTGTATTTGCTCTATTTCAAGTGTGCAACTTCTGATCCTGATGCCCGTAAGCTAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAAACAAAGCTTAAGGTTGATAGGATGCATCTTTATGTTAGGAGAGGGGGTCCCAACTACCAGAGGGGACTCGCAAAAATAACGGCACTTGCAGAGGAAATTAGCCTCCCTATTGAGAGGCATTGGGTTGTAGACGAGAACCACAACTCCGGCTTGACCTTGAAAGACAACTACTTGTCAGAACTTCGTGCAGAGGTTCAGGCGTTCATTACATTGGGTAGAAGGAATTTTTGGTCCGGGACTGTGCAGACTGCTCGATACACACCAGACGCCGGTCGCCTGTTCGATAAACCAGAAAGGCGACTTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

886

Amino Acids

97.42

Weight (kDa)

6.74

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	85 - 142	1.6e-07	Leucine rich repeat
LRR_14	PF23598	101 - 311	3.8e-11	Leucine-rich repeat region
LRR_4	PF12799	107 - 143	2.3e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	422 - 480	1.8e-08	Leucine rich repeat
LRR_8	PF13855	537 - 590	7.3e-06	Leucine rich repeat
LRR_8	PF13855	555 - 614	1.4e-06	Leucine rich repeat
Citrate_bind	PF16114	742 - 820	2.8e-24	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	92, 179
AccB7I	CCANNNNNTGG	1 cut(s)	1649
AccI	GTMKAC	1 cut(s)	2475
AccIII	TCCGGA	1 cut(s)	799
AciI	CCGC	2 cut(s)	147, 722
AclWI	GGATC	3 cut(s)	321, 1238, 2234
AcoI	YGGCCR	1 cut(s)	1640
AcsI	RAATTY	7 cut(s)	160, 310, 391, 1011, 1685, 1885, 2569
AcuI	CTGAAG	3 cut(s)	524, 569, 1151
AcyI	GRCGYC	2 cut(s)	1601, 2613
AfaI	GTAC	6 cut(s)	401, 546, 577, 654, 1378, 1574
AfiI	CCNNNNNNNGG	5 cut(s)	1035, 1610, 1649, 2161, 2615
AflII	CTTAAG	1 cut(s)	2354
AhlI	ACTAGT	2 cut(s)	1406, 2036
AjnI	CCWGG	1 cut(s)	1358
AjuI	GAANNNNNNNTTGG	6 cut(s)	1699, 1731, 2094, 2126, 2557, 2589
AloI	GAACNNNNNNTCC	4 cut(s)	1646, 1678, 2474, 2506
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	3 cut(s)	629, 1415, 1761
AlwI	GGATC	3 cut(s)	321, 1238, 2234
AlwNI	CAGNNNCTG	2 cut(s)	79, 547
Ama87I	CYCGRG	1 cut(s)	1456
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	4 cut(s)	430, 719, 1078, 1640
ApeKI	GCWGC	3 cut(s)	673, 1332, 2303
ApoI	RAATTY	7 cut(s)	160, 310, 391, 1011, 1685, 1885, 2569
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	922
AspS9I	GGNCC	9 cut(s)	431, 616, 719, 935, 1079, 1703, 1875, 2393, 2577
AsuC2I	CCSGG	2 cut(s)	1063, 2581
AsuHPI	GGTGA	5 cut(s)	1201, 1238, 1928, 1957, 2111
AsuII	TTCGAA	1 cut(s)	1133
AsuNHI	GCTAGC	1 cut(s)	2257
AvaI	CYCGRG	1 cut(s)	1456
AvaII	GGWCC	6 cut(s)	616, 935, 1703, 1875, 2393, 2577
AxyI	CCTNAGG	1 cut(s)	657
BaeI	ACNNNNGTAYC	2 cut(s)	536, 569
BalI	TGGCCA	1 cut(s)	1642
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	660, 1344, 2290
BccI	CCATC	2 cut(s)	1024, 1945
BceAI	ACGGC	1 cut(s)	2442
BcgI	CGANNNNNNTGC	2 cut(s)	2579, 2613
BciT130I	CCWGG	1 cut(s)	1360
BciVI	GTATCC	1 cut(s)	861
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	1063, 2581
BcoDI	GTCTC	3 cut(s)	629, 1415, 1761
BcuI	ACTAGT	2 cut(s)	1406, 2036
BfaI	CTAG	5 cut(s)	986, 1407, 1857, 2037, 2258
BfmI	CTRYAG	2 cut(s)	601, 1475
BfrI	CTTAAG	1 cut(s)	2354
BfuAI	ACCTGC	2 cut(s)	92, 179
BfuI	GTATCC	1 cut(s)	861
BglII	AGATCT	1 cut(s)	1635
BisI	GCNGC	4 cut(s)	674, 722, 1333, 2304
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	4 cut(s)	675, 723, 1334, 2305
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	3 cut(s)	1063, 1360, 2581
Bme18I	GGWCC	6 cut(s)	616, 935, 1703, 1875, 2393, 2577
BmeT110I	CYCGRG	1 cut(s)	1456
BmgT120I	GGNCC	9 cut(s)	431, 616, 719, 935, 1079, 1703, 1875, 2393, 2577
BmiI	GGNNCC	7 cut(s)	433, 936, 1515, 1655, 1876, 2394, 2395
BmrFI	CCNGG	3 cut(s)	1063, 1360, 2581
BmrI	ACTGGG	6 cut(s)	543, 726, 1309, 1455, 1779, 2082
BmsI	GCATC	4 cut(s)	525, 2236, 2358, 2380
BmtI	GCTAGC	1 cut(s)	2261
BmuI	ACTGGG	6 cut(s)	543, 726, 1309, 1455, 1779, 2082
BoxI	GACNNNNGTC	2 cut(s)	621, 2616
BpmI	CTGGAG	1 cut(s)	1123
Bpu1102I	GCTNAGC	1 cut(s)	725
Bpu14I	TTCGAA	1 cut(s)	1133
BpuEI	CTTGAG	2 cut(s)	430, 1093
BpuMI	CCSGG	2 cut(s)	1063, 2581
BsaHI	GRCGYC	2 cut(s)	1601, 2613
BsaJI	CCNNGG	4 cut(s)	609, 817, 1503, 2049
BsaWI	WCCGGW	1 cut(s)	799
BsaXI	ACNNNNNCTCC	4 cut(s)	2377, 2407, 2474, 2504
Bsc4I	CCNNNNNNNGG	5 cut(s)	1035, 1610, 1649, 2161, 2615
Bse118I	RCCGGY	2 cut(s)	1603, 2615
Bse21I	CCTNAGG	1 cut(s)	657
Bse3DI	GCAATG	1 cut(s)	966
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	1360
BseDI	CCNNGG	4 cut(s)	609, 817, 1503, 2049
BseGI	GGATG	5 cut(s)	232, 268, 808, 1016, 2373
BseLI	CCNNNNNNNGG	5 cut(s)	1035, 1610, 1649, 2161, 2615
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	4 cut(s)	86, 648, 716, 1816
BseRI	GAGGAG	6 cut(s)	128, 617, 2007, 2080, 2206, 2289
BseXI	GCAGC	3 cut(s)	660, 1344, 2290
BsgI	GTGCAG	2 cut(s)	2553, 2609
Bsh1285I	CGRYCG	1 cut(s)	2620
BshFI	GGCC	4 cut(s)	432, 721, 1080, 1642
BsiEI	CGRYCG	1 cut(s)	2620
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	1456
BsiSI	CCGG	6 cut(s)	800, 1063, 1604, 2493, 2580, 2616
BslFI	GGGAC	6 cut(s)	805, 1888, 2083, 2379, 2424, 2596
BslI	CCNNNNNNNGG	5 cut(s)	1035, 1610, 1649, 2161, 2615
BsmAI	GTCTC	3 cut(s)	629, 1415, 1761
BsmFI	GGGAC	6 cut(s)	805, 1888, 2083, 2379, 2424, 2596
BsmI	GAATGC	2 cut(s)	109, 2044
BsnI	GGCC	4 cut(s)	432, 721, 1080, 1642
BsoBI	CYCGRG	1 cut(s)	1456
Bsp119I	TTCGAA	1 cut(s)	1133
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	799
Bsp143I	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
Bsp1720I	GCTNAGC	1 cut(s)	725
BspACI	CCGC	2 cut(s)	147, 722
BspANI	GGCC	4 cut(s)	432, 721, 1080, 1642
BspCNI	CTCAG	4 cut(s)	85, 649, 717, 1815
BspEI	TCCGGA	1 cut(s)	799
BspLI	GGNNCC	7 cut(s)	433, 936, 1515, 1655, 1876, 2394, 2395
BspMI	ACCTGC	2 cut(s)	92, 179
BspOI	GCTAGC	1 cut(s)	2261
BspPI	GGATC	3 cut(s)	321, 1238, 2234
BspT104I	TTCGAA	1 cut(s)	1133
BspTI	CTTAAG	1 cut(s)	2354
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	2 cut(s)	1603, 2615
BssAI	RCCGGY	2 cut(s)	1603, 2615
BssECI	CCNNGG	4 cut(s)	609, 817, 1503, 2049
BssMI	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
BssNI	GRCGYC	2 cut(s)	1601, 2613
BssT1I	CCWWGG	3 cut(s)	609, 817, 1503
Bst2UI	CCWGG	1 cut(s)	1360
Bst4CI	ACNGT	6 cut(s)	378, 602, 831, 1292, 1381, 2587
Bst6I	CTCTTC	2 cut(s)	211, 1418
BstACI	GRCGYC	2 cut(s)	1601, 2613
BstAFI	CTTAAG	1 cut(s)	2354
BstBI	TTCGAA	1 cut(s)	1133
BstC8I	GCNNGC	3 cut(s)	1239, 1605, 2259
BstDEI	CTNAG	6 cut(s)	72, 323, 657, 725, 1738, 1802
BstEII	GGTNACC	2 cut(s)	740, 1916
BstF5I	GGATG	5 cut(s)	232, 268, 808, 1016, 2373
BstKTI	GATC	7 cut(s)	329, 687, 946, 985, 1246, 1638, 2242
BstMAI	GTCTC	3 cut(s)	629, 1415, 1761
BstMBI	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
BstMCI	CGRYCG	1 cut(s)	2620
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 718
BstNI	CCWGG	1 cut(s)	1360
BstPAI	GACNNNNGTC	2 cut(s)	621, 2616
BstPI	GGTNACC	2 cut(s)	740, 1916
BstSCI	CCNGG	3 cut(s)	1061, 1358, 2579
BstSFI	CTRYAG	2 cut(s)	601, 1475
BstV1I	GCAGC	3 cut(s)	660, 1344, 2290
BstX2I	RGATCY	2 cut(s)	326, 1635
BstXI	CCANNNNNNTGG	2 cut(s)	818, 1004
BstYI	RGATCY	2 cut(s)	326, 1635
Bsu36I	CCTNAGG	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	4 cut(s)	432, 721, 1080, 1642
BtsCI	GGATG	5 cut(s)	232, 268, 808, 1016, 2373
BtsI	GCAGTG	1 cut(s)	1187
BtsIMutI	CAGTG	7 cut(s)	374, 865, 1187, 1322, 1790, 1828, 2292
BveI	ACCTGC	2 cut(s)	92, 179
Cac8I	GCNNGC	3 cut(s)	1239, 1605, 2259
CaiI	CAGNNNCTG	2 cut(s)	79, 547
Cfr10I	RCCGGY	2 cut(s)	1603, 2615
Cfr13I	GGNCC	9 cut(s)	431, 616, 719, 935, 1079, 1703, 1875, 2393, 2577
CseI	GACGC	2 cut(s)	1609, 2621
Csp6I	GTAC	6 cut(s)	400, 545, 576, 653, 1377, 1573
CspCI	CAANNNNNGTGG	4 cut(s)	45, 80, 1057, 1092
CviAII	CATG	4 cut(s)	121, 1213, 1670, 1932
CviQI	GTAC	6 cut(s)	400, 545, 576, 653, 1377, 1573
DdeI	CTNAG	6 cut(s)	72, 323, 657, 725, 1738, 1802
DpnI	GATC	7 cut(s)	328, 686, 945, 984, 1245, 1637, 2241
DpnII	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
DraI	TTTAAA	1 cut(s)	1683
EaeI	YGGCCR	1 cut(s)	1640
Eam1104I	CTCTTC	2 cut(s)	211, 1418
EarI	CTCTTC	2 cut(s)	211, 1418
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	609, 817, 1503
Eco24I	GRGCYC	1 cut(s)	71
Eco32I	GATATC	3 cut(s)	478, 769, 1453
Eco47I	GGWCC	6 cut(s)	616, 935, 1703, 1875, 2393, 2577
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	3 cut(s)	524, 569, 1151
Eco81I	CCTNAGG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	1456
Eco91I	GGTNACC	2 cut(s)	740, 1916
EcoICRI	GAGCTC	1 cut(s)	69
EcoO109I	RGGNCCY	3 cut(s)	616, 1875, 2393
EcoO65I	GGTNACC	2 cut(s)	740, 1916
EcoRII	CCWGG	1 cut(s)	1358
EcoRV	GATATC	3 cut(s)	478, 769, 1453
EcoT14I	CCWWGG	3 cut(s)	609, 817, 1503
EcoT22I	ATGCAT	2 cut(s)	109, 2373
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	3 cut(s)	609, 817, 1503
FaeI	CATG	4 cut(s)	124, 1216, 1673, 1935
FaqI	GGGAC	6 cut(s)	805, 1888, 2083, 2379, 2424, 2596
FatI	CATG	4 cut(s)	120, 1212, 1669, 1931
FbaI	TGATCA	1 cut(s)	684
FblI	GTMKAC	1 cut(s)	2475
Fnu4HI	GCNGC	4 cut(s)	674, 722, 1333, 2304
FokI	GGATG	5 cut(s)	239, 275, 815, 1003, 2380
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	674, 722, 1333, 2304
FspBI	CTAG	5 cut(s)	986, 1407, 1857, 2037, 2258
GluI	GCNGC	4 cut(s)	674, 722, 1333, 2304
GsuI	CTGGAG	1 cut(s)	1123
HaeIII	GGCC	4 cut(s)	432, 721, 1080, 1642
HapII	CCGG	6 cut(s)	800, 1063, 1604, 2493, 2580, 2616
HgaI	GACGC	2 cut(s)	1609, 2621
Hin1I	GRCGYC	2 cut(s)	1601, 2613
Hin1II	CATG	4 cut(s)	124, 1216, 1673, 1935
HindIII	AAGCTT	5 cut(s)	710, 1462, 1766, 1891, 2351
HinfI	GANTC	8 cut(s)	230, 289, 299, 1189, 1795, 1852, 2110, 2412
HpaII	CCGG	6 cut(s)	800, 1063, 1604, 2493, 2580, 2616
HphI	GGTGA	5 cut(s)	1201, 1238, 1928, 1957, 2111
Hpy166II	GTNNAC	5 cut(s)	562, 653, 1631, 1790, 2476
Hpy8I	GTNNAC	5 cut(s)	562, 653, 1631, 1790, 2476
Hpy99I	CGWCG	1 cut(s)	1603
HpyCH4III	ACNGT	6 cut(s)	378, 602, 831, 1292, 1381, 2587
HpyCH4IV	ACGT	1 cut(s)	1425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 718
HpyF3I	CTNAG	6 cut(s)	72, 323, 657, 725, 1738, 1802
HpySE526I	ACGT	1 cut(s)	1425
Hsp92I	GRCGYC	2 cut(s)	1601, 2613
Hsp92II	CATG	4 cut(s)	124, 1216, 1673, 1935
KflI	GGGWCCC	1 cut(s)	2393
Kpn2I	TCCGGA	1 cut(s)	799
KroI	GCCGGC	1 cut(s)	1603
KroNI	GCCGGC	1 cut(s)	1605
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
LmnI	GCTCC	2 cut(s)	1587, 2139
Lsp1109I	GCAGC	3 cut(s)	660, 1344, 2290
LweI	GCATC	4 cut(s)	525, 2236, 2358, 2380
MaeI	CTAG	5 cut(s)	986, 1407, 1857, 2037, 2258
MaeII	ACGT	1 cut(s)	1425
MaeIII	GTNAC	2 cut(s)	740, 1916
MalI	GATC	7 cut(s)	328, 686, 945, 984, 1245, 1637, 2241
MboI	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
MboII	GAAGA	5 cut(s)	198, 834, 1016, 1241, 1405
MfeI	CAATTG	2 cut(s)	383, 939
MflI	RGATCY	2 cut(s)	326, 1635
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	1642
MluNI	TGGCCA	1 cut(s)	1642
MlyI	GAGTC	2 cut(s)	1789, 2406
MmeI	TCCRAC	1 cut(s)	240
Mox20I	TGGCCA	1 cut(s)	1642
Mph1103I	ATGCAT	2 cut(s)	109, 2373
MroI	TCCGGA	1 cut(s)	799
MroNI	GCCGGC	1 cut(s)	1603
MroXI	GAANNNNTTC	1 cut(s)	922
MscI	TGGCCA	1 cut(s)	1642
MslI	CAYNNNNRTG	1 cut(s)	2376
Msp20I	TGGCCA	1 cut(s)	1642
MspA1I	CMGCKG	2 cut(s)	673, 724
MspCI	CTTAAG	1 cut(s)	2354
MspI	CCGG	6 cut(s)	800, 1063, 1604, 2493, 2580, 2616
MspR9I	CCNGG	3 cut(s)	1063, 1360, 2581
MunI	CAATTG	2 cut(s)	383, 939
Mva1269I	GAATGC	2 cut(s)	109, 2044
MvaI	CCWGG	1 cut(s)	1360
MwoI	GCNNNNNNNGC	2 cut(s)	153, 718
NaeI	GCCGGC	1 cut(s)	1605
NciI	CCSGG	2 cut(s)	1063, 2581
NdeII	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
NgoMIV	GCCGGC	1 cut(s)	1603
NheI	GCTAGC	1 cut(s)	2257
NlaIII	CATG	4 cut(s)	124, 1216, 1673, 1935
NlaIV	GGNNCC	7 cut(s)	433, 936, 1515, 1655, 1876, 2394, 2395
NmeAIII	GCCGAG	1 cut(s)	1590
NmuCI	GTSAC	1 cut(s)	1916
NsiI	ATGCAT	2 cut(s)	109, 2373
NspV	TTCGAA	1 cut(s)	1133
PctI	GAATGC	2 cut(s)	109, 2044
PdiI	GCCGGC	1 cut(s)	1605
PdmI	GAANNNNTTC	1 cut(s)	922
PfeI	GAWTC	6 cut(s)	230, 289, 299, 1189, 1852, 2110
PflMI	CCANNNNNTGG	1 cut(s)	1649
PfoI	TCCNGGA	2 cut(s)	1358, 2579
PkrI	GCNGC	4 cut(s)	675, 723, 1334, 2305
PleI	GAGTC	2 cut(s)	1789, 2406
PpsI	GAGTC	2 cut(s)	1789, 2406
PpuMI	RGGWCCY	3 cut(s)	616, 1875, 2393
PshAI	GACNNNNGTC	2 cut(s)	621, 2616
PshBI	ATTAAT	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	71
Psp5II	RGGWCCY	3 cut(s)	616, 1875, 2393
Psp6I	CCWGG	1 cut(s)	1358
PspEI	GGTNACC	2 cut(s)	740, 1916
PspGI	CCWGG	1 cut(s)	1358
PspN4I	GGNNCC	7 cut(s)	433, 936, 1515, 1655, 1876, 2394, 2395
PspPI	GGNCC	9 cut(s)	431, 616, 719, 935, 1079, 1703, 1875, 2393, 2577
PspPPI	RGGWCCY	3 cut(s)	616, 1875, 2393
PstNI	CAGNNNCTG	2 cut(s)	79, 547
PsuI	RGATCY	2 cut(s)	326, 1635
PvuII	CAGCTG	1 cut(s)	673
RsaI	GTAC	6 cut(s)	401, 546, 577, 654, 1378, 1574
RsaNI	GTAC	6 cut(s)	400, 545, 576, 653, 1377, 1573
RseI	CAYNNNNRTG	1 cut(s)	2376
SacI	GAGCTC	1 cut(s)	71
SatI	GCNGC	4 cut(s)	674, 722, 1333, 2304
Sau3AI	GATC	7 cut(s)	326, 684, 943, 982, 1243, 1635, 2239
Sau96I	GGNCC	9 cut(s)	431, 616, 719, 935, 1079, 1703, 1875, 2393, 2577
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	2 cut(s)	1789, 2406
ScrFI	CCNGG	3 cut(s)	1063, 1360, 2581
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	4 cut(s)	525, 2236, 2358, 2380
SfcI	CTRYAG	2 cut(s)	601, 1475
SfuI	TTCGAA	1 cut(s)	1133
SinI	GGWCC	6 cut(s)	616, 935, 1703, 1875, 2393, 2577
SmiMI	CAYNNNNRTG	1 cut(s)	2376
SmlI	CTYRAG	3 cut(s)	409, 1072, 2354
SmoI	CTYRAG	3 cut(s)	409, 1072, 2354
SpeI	ACTAGT	2 cut(s)	1406, 2036
SsiI	CCGC	2 cut(s)	147, 722
SspMI	CTAG	5 cut(s)	986, 1407, 1857, 2037, 2258
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	1061, 1358, 2579
StyI	CCWWGG	3 cut(s)	609, 817, 1503
TaaI	ACNGT	6 cut(s)	378, 602, 831, 1292, 1381, 2587
TaiI	ACGT	1 cut(s)	1428
TaqI	TCGA	4 cut(s)	269, 1133, 2599, 2628
TatI	WGTACW	2 cut(s)	399, 1572
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	6 cut(s)	230, 289, 299, 1189, 1852, 2110
TscAI	CASTG	7 cut(s)	381, 865, 1187, 1322, 1797, 1828, 2299
TseFI	GTSAC	1 cut(s)	1916
TseI	GCWGC	3 cut(s)	673, 1332, 2303
Tsp45I	GTSAC	1 cut(s)	1916
TspDTI	ATGAA	9 cut(s)	17, 109, 915, 1097, 1229, 1244, 1296, 1658, 2539
TspRI	CASTG	7 cut(s)	381, 865, 1187, 1322, 1797, 1828, 2299
Van91I	CCANNNNNTGG	1 cut(s)	1649
Vha464I	CTTAAG	1 cut(s)	2354
VpaK11BI	GGWCC	6 cut(s)	616, 935, 1703, 1875, 2393, 2577
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	7 cut(s)	160, 310, 391, 1011, 1685, 1885, 2569
XmiI	GTMKAC	1 cut(s)	2475
XmnI	GAANNNNTTC	1 cut(s)	922
XspI	CTAG	5 cut(s)	986, 1407, 1857, 2037, 2258
ZrmI	AGTACT	1 cut(s)	401
Zsp2I	ATGCAT	2 cut(s)	109, 2373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.