Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Forward (+)

53930469 .. 53937149

Gene Structure 6681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0368200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGAGCTCCGCCAGAGCCAAGAACTTCCGCCGCCGCATCGACGACGACGATGATGACGACGCCGCCGATACCCCTTCAACCACCTCCACTCTCAAATCCCTATCGAAACCCTCCTCCTCCGCCAAGCCCAAGAAGCCTCAGAACCAAGCCCCGAAGCTCCTCAGCTTCGCCGACGACGAAGAAAACGCCACGCCGTCTCGCTCCTCCTCCAAGCGCGACAAGTCGTCTTCTCGCCTCGCCAAGCCCTCCTCAGCTCACAAGCTCACGGCCGCCAAGGACCGTTTGGTAAATTCCTCCTCCGTCTCTTCTTCTCTTCCCTCCAATGTCCAGCCCCAAGCCGGAACTTACACCAAGGAAGCCCTCCGTGAGCTTCAGAAGAACACGCGAACCCTAGCCAGCTCTAGACCCTCCTCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCTCCGCCGCCGAGGCCGTGAACGGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGAACAAGGATAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAAGGATAGGTCGGAGTATCCTGATCAGGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGCGGCTCCGGAAGTCCAAGCCCGCCGCGCCGGATTTCATTTCATTGGATTCGGGGAGTAATCACGGCGCGGCGGAGGGGTTGAGTGATGAGGAACCGGAGTTTCAGAACCGAATTGCAATGTTTGGGGAGAAGATGGAGGGTAGTAAGAAAGGTGTGTTTGAGGATGTTGATGATAGGGAAGTGGATGGTGGTGGATTGAGGAAAGAGAGCGTAGTAGTCGAAGATGATGATGAGGATGAAGAAGAGAAGATTTGGGAGGAAGAGCAGTTTAGGAAAGGGTTGGGGAAGAGAGTGGATGATGGGTCTAGTATAGGGGTTAGTGCTAGTGTTCCTAGAGTTCATAGTGTGCCACAGCCCAAGGCTACTTACTCCGCAATCGCTGGGTATAGTTTGGCACAGACTCTGCCTGGTGTGTCGAGTATAGGAGGGGCAACAGGAGCATCACAAGGTTCGAATGCTATGTCCATAAATGAGCAAGCTGAAATTGCTCAGAAAGCTTTGCAGGAAAATGTGAAGAAACTTAAGGAAAGTCACGGAAGAACAAAGATGTCACTAACTAAGGCTGATGAGAATTTATCTGCCTCACTATTGAACATTACTGCTCTTGAAAAGTCTCTGTCTGCTGCTGACGTGAAGTACAAGTTCATGCAAGAGCTTCGCGACTTTGTCTCTACCATATGTGACTTTTTGCAGGATAAGGCTCCCTTGATAGAGGAGCTTGAAGAGGAAATGCAGAAGCAACGTGATGAACGTGCATCAGCTATTTTTGAAAGAAGAATTGCTGATAACGATGATGAAATGATGGAAGTAGAAGCAGCTGTAAATGCAGCAATGTCTATTTTCAGTAAAGAAGGTACCGGTGCTGATATAATTGCAGTTGCTAAAAGTGCAGCACAGGCTGCTTCTGCTGCTGTGAGAGAACAAACAAATTTACCAGTCAAGCTAGATGAATTTGGTAGAGATATGAACCTTAAGAAACGTATGGATATGAAAGGCAGGGCCGAGGCTCGTCAACGCAGGAGAAAAAAGTATGAAGCTAAGAGAGAGTCATCCATGGATGTGGACAGTCCTAATCGGACGGTTGAAGGAGAATCAAGCACCGATGAGAGTGACAGTGAGAGTAAAGAGTACGAGTCACACCGCCAGTTGGTGCTTGGGACTGCTGATCAAGTTTTCAGTGATGCAGCCGAGGAATATTCACAACTTTCAGCTGTCAAAGAAAGGTTTGAAGAATGGAAGAGAGAGTATCGATCCAGCTACCGTGATGCTTACATGTCATTGAGTGTTCCTGTTATATTCTCTCCGTACGTAAGGCTGGAGCTCTTGAAGTGGGACCCTCTCCGTGAGAACACAGATTTTGTACATATGAGCTGGCATTTATTATTAGAGAATTATGGTTTACCGGAGGATGGTTCAGATTTTGCATCTGATGATGCTGATGCTAACCTTATCCCTGCATTGGTGGAAAAGGTTGCATTACCCATTTTGCATCATCAAATTGTTCACTGCTGGGATATTCTCAGTACAAGAGAAACAAAGAATGCAGTTGCTGCCACAAGCTTGGTAACAGATTATGTCTCTTCCAGTGAGGCTCTTGAAGATTTATTAGTTGCTATTCACACCCGTCTGGCAGATGCTGTCTCAAAACTTACGGTCCCAACATGGAGCCCTCTTGTATTGAAAGCAGTACCAAATGCTGCAAGAATTGCAGCATATCGATTTGGCATGTCTGTTCGTTTGATGAAAAATATCTGCTTGTGGAAAGAAGTACTTGCTTTGCCAGTTCTAGAGAAGCTTGCTATTAATGAGCTTTTGTGTGGCAAAGTTCTACCTCACATTCGAAGCATTGCTGCCAATGTTAATGATGCAGTTACAAGAACTGAAAGGATTATTGCTTCTCTATCAGGGGTGTGGTCAGGTTCAGATGTCACAGGAGACCGTAGCCGCAAGTTGCAATCACTGGTGGATTATGTGCTGACGCTGGGAAAGACTATAGAGAAGAAACATTCGCTGGGTGTGACACAAAGTGAAACTGGTGGACTGGCTCGTAGATTGAAGAAGATGCTGGTTGAGCTCAACGAGTATGACAAGGCCAGGGACGTAGCTAGGACCTTCCATCTTAAAGAGGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

921

Amino Acids

101.57

Weight (kDa)

5.48

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTR2	PF15458	115 - 351	1.1e-11	Nineteen complex-related protein 2
GCFC	PF07842	612 - 815	2.6e-30	GC-rich sequence DNA-binding factor-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1484
AccB1I	GGYRCC	1 cut(s)	1484
AccBSI	CCGCTC	1 cut(s)	631
AccII	CGCG	5 cut(s)	216, 385, 656, 698, 1290
AccIII	TCCGGA	1 cut(s)	636
AclWI	GGATC	2 cut(s)	572, 1875
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	4 cut(s)	289, 1201, 1558, 1580
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	2657
AfaI	GTAC	8 cut(s)	1268, 1486, 1760, 1937, 1992, 2155, 2319, 2400
AfiI	CCNNNNNNNGG	4 cut(s)	338, 1777, 2039, 2089
AflII	CTTAAG	2 cut(s)	1151, 1601
AflIII	ACRYGT	1 cut(s)	1902
AgeI	ACCGGT	1 cut(s)	1487
AhdI	GACNNNNNGTC	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	1261
AjnI	CCWGG	2 cut(s)	1036, 2723
Alw21I	GWGCWC	3 cut(s)	8, 1953, 2706
Alw26I	GTCTC	7 cut(s)	201, 307, 1248, 1303, 2212, 2275, 2559
AlwI	GGATC	2 cut(s)	572, 1875
AlwNI	CAGNNNCTG	3 cut(s)	1033, 2180, 2267
Aor13HI	TCCGGA	1 cut(s)	636
AoxI	GGCC	5 cut(s)	267, 468, 597, 1629, 2721
ApoI	RAATTY	4 cut(s)	289, 1201, 1558, 1580
ArsI	GACNNNNNNTTYG	2 cut(s)	1076, 1108
AseI	ATTAAT	1 cut(s)	2433
AsiGI	ACCGGT	1 cut(s)	1487
Asp700I	GAANNNNTTC	1 cut(s)	612
Asp718I	GGTACC	1 cut(s)	1484
AspLEI	GCGC	3 cut(s)	216, 658, 698
AspS9I	GGNCC	5 cut(s)	277, 1629, 1963, 2284, 2739
AsuII	TTCGAA	2 cut(s)	1082, 2470
AvaII	GGWCC	4 cut(s)	277, 1963, 2284, 2739
BanI	GGYRCC	1 cut(s)	1484
BanII	GRGCYC	5 cut(s)	8, 426, 1953, 2300, 2706
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	3 cut(s)	8, 1953, 2706
BbvCI	CCTCAGC	2 cut(s)	161, 250
BccI	CCATC	6 cut(s)	757, 809, 923, 1426, 2033, 2754
BceAI	ACGGC	4 cut(s)	178, 282, 455, 709
BcgI	CGANNNNNNTGC	2 cut(s)	1268, 1302
BciT130I	CCWGG	2 cut(s)	1038, 2725
BciVI	GTATCC	1 cut(s)	597
BclI	TGATCA	2 cut(s)	592, 1795
BcoDI	GTCTC	7 cut(s)	201, 307, 1248, 1303, 2212, 2275, 2559
BfaI	CTAG	8 cut(s)	392, 402, 936, 954, 963, 1574, 2417, 2736
BfmI	CTRYAG	1 cut(s)	2622
BfrI	CTTAAG	2 cut(s)	1151, 1601
BfuI	GTATCC	1 cut(s)	597
BglI	GCCNNNNNGGC	1 cut(s)	467
BmcAI	AGTACT	1 cut(s)	2400
Bme1390I	CCNGG	2 cut(s)	1038, 2725
Bme18I	GGWCC	4 cut(s)	277, 1963, 2284, 2739
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	1261
BmgT120I	GGNCC	5 cut(s)	277, 1629, 1963, 2284, 2739
BmiI	GGNNCC	9 cut(s)	481, 635, 723, 1332, 1486, 1964, 1965, 2286, 2297
BmrFI	CCNGG	2 cut(s)	1038, 2725
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	1967
Bpu10I	CCTNAGC	2 cut(s)	161, 250
Bpu14I	TTCGAA	2 cut(s)	1082, 2470
BpuEI	CTTGAG	1 cut(s)	422
Bsa29I	ATCGAT	2 cut(s)	1879, 2347
BsaAI	YACGTR	1 cut(s)	1939
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	2559
BsaJI	CCNNGG	9 cut(s)	273, 351, 465, 558, 987, 1632, 1683, 1818, 2724
BsaWI	WCCGGW	4 cut(s)	636, 724, 1487, 2032
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 1777, 2039, 2089
Bse118I	RCCGGY	1 cut(s)	1487
Bse1I	ACTGG	7 cut(s)	1565, 1774, 2214, 2411, 2595, 2668, 2676
Bse3DI	GCAATG	3 cut(s)	753, 1467, 2475
BseAI	TCCGGA	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	1038, 2725
BseCI	ATCGAT	2 cut(s)	1879, 2347
BseDI	CCNNGG	9 cut(s)	273, 351, 465, 558, 987, 1632, 1683, 1818, 2724
BseGI	GGATG	7 cut(s)	799, 820, 871, 931, 1679, 1693, 2044
BseLI	CCNNNNNNNGG	4 cut(s)	338, 1777, 2039, 2089
BseMI	GCAATG	3 cut(s)	753, 1467, 2475
BseMII	CTCAG	5 cut(s)	152, 175, 264, 1133, 2164
BseNI	ACTGG	7 cut(s)	1565, 1774, 2214, 2411, 2595, 2668, 2676
BseRI	GAGGAG	9 cut(s)	103, 106, 149, 193, 196, 238, 286, 400, 1358
BseX3I	CGGCCG	1 cut(s)	267
BseYI	CCCAGC	4 cut(s)	1010, 2139, 2611, 2641
BsgI	GTGCAG	1 cut(s)	1539
Bsh1236I	CGCG	5 cut(s)	216, 385, 656, 698, 1290
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	5 cut(s)	269, 470, 599, 1631, 2723
BshNI	GGYRCC	1 cut(s)	1484
BshTI	ACCGGT	1 cut(s)	1487
BshVI	ATCGAT	2 cut(s)	1879, 2347
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	3 cut(s)	8, 1953, 2706
BsiSI	CCGG	6 cut(s)	339, 637, 659, 725, 1488, 2033
BsiWI	CGTACG	1 cut(s)	1935
BslFI	GGGAC	4 cut(s)	1801, 1976, 2270, 2741
BslI	CCNNNNNNNGG	4 cut(s)	338, 1777, 2039, 2089
BsmAI	GTCTC	7 cut(s)	201, 307, 1248, 1303, 2212, 2275, 2559
BsmBI	CGTCTC	2 cut(s)	201, 307
BsmFI	GGGAC	4 cut(s)	1801, 1976, 2270, 2741
BsmI	GAATGC	2 cut(s)	1090, 2176
BsnI	GGCC	5 cut(s)	269, 470, 599, 1631, 2723
Bso31I	GGTCTC	1 cut(s)	2559
Bsp119I	TTCGAA	2 cut(s)	1082, 2470
Bsp1286I	GDGCHC	5 cut(s)	8, 426, 1953, 2300, 2706
Bsp13I	TCCGGA	1 cut(s)	636
Bsp1407I	TGTACA	1 cut(s)	1990
Bsp143I	GATC	4 cut(s)	564, 592, 1795, 1880
Bsp19I	CCATGG	2 cut(s)	558, 1683
Bsp68I	TCGCGA	1 cut(s)	1290
BspANI	GGCC	5 cut(s)	269, 470, 599, 1631, 2723
BspCNI	CTCAG	5 cut(s)	151, 174, 263, 1132, 2163
BspDI	ATCGAT	2 cut(s)	1879, 2347
BspEI	TCCGGA	1 cut(s)	636
BspFNI	CGCG	5 cut(s)	216, 385, 656, 698, 1290
BspLI	GGNNCC	9 cut(s)	481, 635, 723, 1332, 1486, 1964, 1965, 2286, 2297
BspPI	GGATC	2 cut(s)	572, 1875
BspQI	GCTCTTC	1 cut(s)	885
BspT104I	TTCGAA	2 cut(s)	1082, 2470
BspT107I	GGYRCC	1 cut(s)	1484
BspTI	CTTAAG	2 cut(s)	1151, 1601
BspTNI	GGTCTC	1 cut(s)	2559
BsrBI	CCGCTC	1 cut(s)	631
BsrDI	GCAATG	3 cut(s)	753, 1467, 2475
BsrFI	RCCGGY	1 cut(s)	1487
BsrGI	TGTACA	1 cut(s)	1990
BsrI	ACTGG	7 cut(s)	1565, 1774, 2214, 2411, 2595, 2668, 2676
BssAI	RCCGGY	1 cut(s)	1487
BssECI	CCNNGG	9 cut(s)	273, 351, 465, 558, 987, 1632, 1683, 1818, 2724
BssMI	GATC	4 cut(s)	564, 592, 1795, 1880
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	5 cut(s)	273, 351, 558, 987, 1683
Bst2UI	CCWGG	2 cut(s)	1038, 2725
Bst4CI	ACNGT	7 cut(s)	281, 1697, 1711, 1745, 1892, 2284, 2570
Bst6I	CTCTTC	8 cut(s)	310, 318, 867, 885, 911, 1347, 1862, 2215
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	1151, 1601
BstAPI	GCANNNNNTGC	3 cut(s)	1529, 2180, 2336
BstAUI	TGTACA	1 cut(s)	1990
BstBAI	YACGTR	1 cut(s)	1939
BstBI	TTCGAA	2 cut(s)	1082, 2470
BstC8I	GCNNGC	5 cut(s)	397, 651, 1107, 2003, 2427
BstDEI	CTNAG	7 cut(s)	138, 161, 250, 1119, 1188, 1668, 2150
BstDSI	CCRYGG	2 cut(s)	558, 1683
BstF5I	GGATG	7 cut(s)	799, 820, 871, 931, 1679, 1693, 2044
BstFNI	CGCG	5 cut(s)	216, 385, 656, 698, 1290
BstHHI	GCGC	3 cut(s)	216, 658, 698
BstKTI	GATC	4 cut(s)	567, 595, 1798, 1883
BstMAI	GTCTC	7 cut(s)	201, 307, 1248, 1303, 2212, 2275, 2559
BstMBI	GATC	4 cut(s)	564, 592, 1795, 1880
BstMCI	CGRYCG	1 cut(s)	270
BstNI	CCWGG	2 cut(s)	1038, 2725
BstNSI	RCATGY	2 cut(s)	1906, 2359
BstSCI	CCNGG	2 cut(s)	1036, 2723
BstSFI	CTRYAG	1 cut(s)	2622
BstSNI	TACGTA	1 cut(s)	1939
BstUI	CGCG	5 cut(s)	216, 385, 656, 698, 1290
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	3 cut(s)	490, 1690, 2191
BstZI	CGGCCG	1 cut(s)	267
Bsu15I	ATCGAT	2 cut(s)	1879, 2347
BsuI	GTATCC	1 cut(s)	597
BsuRI	GGCC	5 cut(s)	269, 470, 599, 1631, 2723
BsuTUI	ATCGAT	2 cut(s)	1879, 2347
BtgI	CCRYGG	2 cut(s)	558, 1683
BtrI	CACGTC	1 cut(s)	1261
BtsCI	GGATG	7 cut(s)	799, 820, 871, 931, 1679, 1693, 2044
BtsI	GCAGTG	1 cut(s)	2134
BtsIMutI	CAGTG	5 cut(s)	1750, 1813, 2134, 2221, 2588
BtuMI	TCGCGA	1 cut(s)	1290
Cac8I	GCNNGC	5 cut(s)	397, 651, 1107, 2003, 2427
CaiI	CAGNNNCTG	3 cut(s)	1033, 2180, 2267
CfoI	GCGC	3 cut(s)	216, 658, 698
Cfr10I	RCCGGY	1 cut(s)	1487
Cfr13I	GGNCC	5 cut(s)	277, 1629, 1963, 2284, 2739
ClaI	ATCGAT	2 cut(s)	1879, 2347
CseI	GACGC	2 cut(s)	68, 2617
Csp6I	GTAC	8 cut(s)	1267, 1485, 1759, 1936, 1991, 2154, 2318, 2399
CspAI	ACCGGT	1 cut(s)	1487
CviAII	CATG	6 cut(s)	559, 1276, 1684, 1903, 2292, 2356
CviQI	GTAC	8 cut(s)	1267, 1485, 1759, 1936, 1991, 2154, 2318, 2399
DdeI	CTNAG	7 cut(s)	138, 161, 250, 1119, 1188, 1668, 2150
DpnI	GATC	4 cut(s)	566, 594, 1797, 1882
DpnII	GATC	4 cut(s)	564, 592, 1795, 1880
DraIII	CACNNNGTG	1 cut(s)	2657
DriI	GACNNNNNGTC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	8 cut(s)	310, 318, 867, 885, 911, 1347, 1862, 2215
Eam1105I	GACNNNNNGTC	1 cut(s)	223
EarI	CTCTTC	8 cut(s)	310, 318, 867, 885, 911, 1347, 1862, 2215
EciI	GGCGGA	5 cut(s)	17, 109, 403, 448, 716
Ecl136II	GAGCTC	3 cut(s)	6, 1951, 2704
EclXI	CGGCCG	1 cut(s)	267
Eco105I	TACGTA	1 cut(s)	1939
Eco130I	CCWWGG	5 cut(s)	273, 351, 558, 987, 1683
Eco24I	GRGCYC	5 cut(s)	8, 426, 1953, 2300, 2706
Eco31I	GGTCTC	1 cut(s)	2559
Eco47I	GGWCC	4 cut(s)	277, 1963, 2284, 2739
Eco52I	CGGCCG	1 cut(s)	267
Eco53kI	GAGCTC	3 cut(s)	6, 1951, 2704
Eco57I	CTGAAG	1 cut(s)	356
EcoICRI	GAGCTC	3 cut(s)	6, 1951, 2704
EcoO109I	RGGNCCY	2 cut(s)	1963, 2739
EcoRII	CCWGG	2 cut(s)	1036, 2723
EcoT14I	CCWWGG	5 cut(s)	273, 351, 558, 987, 1683
EcoT38I	GRGCYC	5 cut(s)	8, 426, 1953, 2300, 2706
ErhI	CCWWGG	5 cut(s)	273, 351, 558, 987, 1683
Esp3I	CGTCTC	2 cut(s)	201, 307
FaeI	CATG	6 cut(s)	562, 1279, 1687, 1906, 2295, 2359
FalI	AAGNNNNNCTT	4 cut(s)	1319, 1351, 2385, 2417
FaqI	GGGAC	4 cut(s)	1801, 1976, 2270, 2741
FatI	CATG	6 cut(s)	558, 1275, 1683, 1902, 2291, 2355
FauI	CCCGC	1 cut(s)	658
FauNDI	CATATG	2 cut(s)	1307, 1995
FbaI	TGATCA	2 cut(s)	592, 1795
FokI	GGATG	7 cut(s)	806, 827, 878, 938, 1666, 1700, 2051
FriOI	GRGCYC	5 cut(s)	8, 426, 1953, 2300, 2706
FspBI	CTAG	8 cut(s)	392, 402, 936, 954, 963, 1574, 2417, 2736
GlaI	GCGC	3 cut(s)	215, 657, 697
GsaI	CCCAGC	4 cut(s)	1014, 2143, 2615, 2645
GsuI	CTGGAG	1 cut(s)	1967
HaeIII	GGCC	5 cut(s)	269, 470, 599, 1631, 2723
HapII	CCGG	6 cut(s)	339, 637, 659, 725, 1488, 2033
HgaI	GACGC	2 cut(s)	68, 2617
HhaI	GCGC	3 cut(s)	216, 658, 698
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	6 cut(s)	562, 1279, 1687, 1906, 2295, 2359
Hin6I	GCGC	3 cut(s)	214, 656, 696
HinP1I	GCGC	3 cut(s)	214, 656, 696
HincII	GTYRAC	1 cut(s)	1643
HindII	GTYRAC	1 cut(s)	1643
HindIII	AAGCTT	3 cut(s)	1125, 2188, 2423
HinfI	GANTC	7 cut(s)	494, 542, 677, 1030, 1676, 1721, 1763
HpaII	CCGG	6 cut(s)	339, 637, 659, 725, 1488, 2033
Hpy166II	GTNNAC	6 cut(s)	475, 1643, 1693, 2030, 2134, 2669
Hpy188III	TCNNGA	9 cut(s)	402, 546, 590, 637, 1235, 1289, 1954, 2225, 2417
Hpy8I	GTNNAC	6 cut(s)	475, 1643, 1693, 2030, 2134, 2669
Hpy99I	CGWCG	7 cut(s)	44, 47, 50, 62, 176, 179, 509
HpyAV	CCTTC	4 cut(s)	84, 1475, 1709, 2752
HpyCH4III	ACNGT	7 cut(s)	281, 1697, 1711, 1745, 1892, 2284, 2570
HpyCH4IV	ACGT	6 cut(s)	1260, 1372, 1381, 1609, 1938, 2730
HpyF3I	CTNAG	7 cut(s)	138, 161, 250, 1119, 1188, 1668, 2150
HpySE526I	ACGT	6 cut(s)	1260, 1372, 1381, 1609, 1938, 2730
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	6 cut(s)	562, 1279, 1687, 1906, 2295, 2359
HspAI	GCGC	3 cut(s)	214, 656, 696
KflI	GGGWCCC	1 cut(s)	1963
Kpn2I	TCCGGA	1 cut(s)	636
KpnI	GGTACC	1 cut(s)	1488
Ksp22I	TGATCA	2 cut(s)	592, 1795
Kzo9I	GATC	4 cut(s)	564, 592, 1795, 1880
LguI	GCTCTTC	1 cut(s)	885
MaeI	CTAG	8 cut(s)	392, 402, 936, 954, 963, 1574, 2417, 2736
MaeII	ACGT	6 cut(s)	1260, 1372, 1381, 1609, 1938, 2730
MalI	GATC	4 cut(s)	566, 594, 1797, 1882
MbiI	CCGCTC	1 cut(s)	631
MboI	GATC	4 cut(s)	564, 592, 1795, 1880
MhlI	GDGCHC	5 cut(s)	8, 426, 1953, 2300, 2706
MlyI	GAGTC	5 cut(s)	488, 551, 1024, 1685, 1772
MmeI	TCCRAC	1 cut(s)	561
MroI	TCCGGA	1 cut(s)	636
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	6 cut(s)	450, 1152, 1602, 2433, 2490, 2751
MslI	CAYNNNNRTG	1 cut(s)	1688
MspA1I	CMGCKG	2 cut(s)	1448, 1841
MspCI	CTTAAG	2 cut(s)	1151, 1601
MspI	CCGG	6 cut(s)	339, 637, 659, 725, 1488, 2033
MspR9I	CCNGG	2 cut(s)	1038, 2725
Mva1269I	GAATGC	2 cut(s)	1090, 2176
MvaI	CCWGG	2 cut(s)	1038, 2725
MvnI	CGCG	5 cut(s)	216, 385, 656, 698, 1290
NcoI	CCATGG	2 cut(s)	558, 1683
NdeI	CATATG	2 cut(s)	1307, 1995
NdeII	GATC	4 cut(s)	564, 592, 1795, 1880
NlaIII	CATG	6 cut(s)	562, 1279, 1687, 1906, 2295, 2359
NlaIV	GGNNCC	9 cut(s)	481, 635, 723, 1332, 1486, 1964, 1965, 2286, 2297
NmeAIII	GCCGAG	5 cut(s)	445, 490, 565, 1657, 1843
NmuCI	GTSAC	8 cut(s)	543, 1160, 1179, 1310, 1739, 1764, 2557, 2647
NruI	TCGCGA	1 cut(s)	1290
NspI	RCATGY	2 cut(s)	1906, 2359
NspV	TTCGAA	2 cut(s)	1082, 2470
PciI	ACATGT	1 cut(s)	1902
PciSI	GCTCTTC	1 cut(s)	885
PcsI	WCGNNNNNNNCGW	5 cut(s)	45, 54, 63, 174, 1378
PctI	GAATGC	2 cut(s)	1090, 2176
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	677, 1721
Pfl23II	CGTACG	1 cut(s)	1935
PflFI	GACNNNGTC	1 cut(s)	1295
PinAI	ACCGGT	1 cut(s)	1487
PleI	GAGTC	5 cut(s)	488, 550, 1024, 1684, 1771
PpsI	GAGTC	5 cut(s)	488, 550, 1024, 1684, 1771
Ppu21I	YACGTR	1 cut(s)	1939
PpuMI	RGGWCCY	2 cut(s)	1963, 2739
PscI	ACATGT	1 cut(s)	1902
PshBI	ATTAAT	1 cut(s)	2433
Psp124BI	GAGCTC	3 cut(s)	8, 1953, 2706
Psp5II	RGGWCCY	2 cut(s)	1963, 2739
Psp6I	CCWGG	2 cut(s)	1036, 2723
PspFI	CCCAGC	4 cut(s)	1010, 2139, 2611, 2641
PspGI	CCWGG	2 cut(s)	1036, 2723
PspLI	CGTACG	1 cut(s)	1935
PspN4I	GGNNCC	9 cut(s)	481, 635, 723, 1332, 1486, 1964, 1965, 2286, 2297
PspPI	GGNCC	5 cut(s)	277, 1629, 1963, 2284, 2739
PspPPI	RGGWCCY	2 cut(s)	1963, 2739
PstNI	CAGNNNCTG	3 cut(s)	1033, 2180, 2267
PsyI	GACNNNGTC	1 cut(s)	1295
PvuII	CAGCTG	2 cut(s)	1448, 1841
RruI	TCGCGA	1 cut(s)	1290
RsaI	GTAC	8 cut(s)	1268, 1486, 1760, 1937, 1992, 2155, 2319, 2400
RsaNI	GTAC	8 cut(s)	1267, 1485, 1759, 1936, 1991, 2154, 2318, 2399
RseI	CAYNNNNRTG	1 cut(s)	1688
SacI	GAGCTC	3 cut(s)	8, 1953, 2706
SapI	GCTCTTC	1 cut(s)	885
SaqAI	TTAA	6 cut(s)	450, 1152, 1602, 2433, 2490, 2751
Sau3AI	GATC	4 cut(s)	564, 592, 1795, 1880
Sau96I	GGNCC	5 cut(s)	277, 1629, 1963, 2284, 2739
ScaI	AGTACT	1 cut(s)	2400
SchI	GAGTC	5 cut(s)	488, 551, 1024, 1685, 1772
ScrFI	CCNGG	2 cut(s)	1038, 2725
SduI	GDGCHC	5 cut(s)	8, 426, 1953, 2300, 2706
SfcI	CTRYAG	1 cut(s)	2622
SfuI	TTCGAA	2 cut(s)	1082, 2470
SinI	GGWCC	4 cut(s)	277, 1963, 2284, 2739
SmiMI	CAYNNNNRTG	1 cut(s)	1688
SmlI	CTYRAG	3 cut(s)	437, 1151, 1601
SmoI	CTYRAG	3 cut(s)	437, 1151, 1601
SnaBI	TACGTA	1 cut(s)	1939
SspI	AATATT	1 cut(s)	1826
SspMI	CTAG	8 cut(s)	392, 402, 936, 954, 963, 1574, 2417, 2736
SstI	GAGCTC	3 cut(s)	8, 1953, 2706
StyD4I	CCNGG	2 cut(s)	1036, 2723
StyI	CCWWGG	5 cut(s)	273, 351, 558, 987, 1683
TaaI	ACNGT	7 cut(s)	281, 1697, 1711, 1745, 1892, 2284, 2570
TaiI	ACGT	6 cut(s)	1263, 1375, 1384, 1612, 1941, 2733
TaqI	TCGA	9 cut(s)	39, 104, 567, 849, 1046, 1082, 1879, 2347, 2470
TatI	WGTACW	4 cut(s)	1266, 1990, 2153, 2398
TfiI	GAWTC	2 cut(s)	677, 1721
Tru1I	TTAA	6 cut(s)	450, 1152, 1602, 2433, 2490, 2751
Tru9I	TTAA	6 cut(s)	450, 1152, 1602, 2433, 2490, 2751
TscAI	CASTG	5 cut(s)	1750, 1813, 2141, 2221, 2595
TseFI	GTSAC	8 cut(s)	543, 1160, 1179, 1310, 1739, 1764, 2557, 2647
Tsp45I	GTSAC	8 cut(s)	543, 1160, 1179, 1310, 1739, 1764, 2557, 2647
TspGWI	ACGGA	6 cut(s)	289, 353, 492, 1179, 1923, 1961
TspRI	CASTG	5 cut(s)	1750, 1813, 2141, 2221, 2595
Tth111I	GACNNNGTC	1 cut(s)	1295
Vha464I	CTTAAG	2 cut(s)	1151, 1601
VpaK11BI	GGWCC	4 cut(s)	277, 1963, 2284, 2739
VspI	ATTAAT	1 cut(s)	2433
XapI	RAATTY	4 cut(s)	289, 1201, 1558, 1580
XbaI	TCTAGA	2 cut(s)	401, 2416
XceI	RCATGY	2 cut(s)	1906, 2359
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 1781
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	8 cut(s)	392, 402, 936, 954, 963, 1574, 2417, 2736
ZrmI	AGTACT	1 cut(s)	2400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.