Rh4CG456800

Phytosulfokine receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
68885076 .. 68886389
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG456800.1

Sequence Viewer

Length: 1314 bp
ATGAGTGTCCAAGACTTCAGGGTGATTCTGTTTGTTATTGGGTTTTGCTTTCAAGCTCAGGTTTTGATCTCTCAGAACCTGACGTGTCATACAAATGATTTGAATGCATTGGAGGATTTCATGAGTGGTCTGCAAAGTGCCATTGATGGCTGGGGCAATAGTTTCTCTTCTGATTGCTGTAAATGGGCAGGTATCACTTGTAACTCTTCATCTTCTCTTGGACTTAACGATTCGGTTGATACTTATAGAGTGATTGAGTTGGATCTTTCAAGTAAAAGACTAATGGGGAATCTCTCTGAATCTTTGGGCAATTTGGAACAACTTAGAGCCCTCAACCTCTCTCACAATTTCCTCAAATACTCACTTCCCATGAACCTGTTTCGATTGCCAAATTTAGAGCTCTTAGACTTGAGCTCTAATGATTTCTCTGGCCCCATTCCAGTTGATATTAATTTACCATCAATTCAGTCTTTTGACATGTCTCAGAACTTGTTGAGTGGTTCTCTTTCGCATAGCTTCTGTGCTAATCAAACTGAGCTTCGGGTGCTGAACTTGGCAGATAATTACTTGTCTGGTAACCTCCCACCGGGTCTTGGGAATTGTAGCTCCTTGGAGGCCATTCATCTCGGCACAAATAGTCTCTCAGGTGCTATACCTGAAGGTCTATTTGGGCTGCAAAAGCTAACCCAATTGGATATTCAAGAGAACAAATTTTCCGGGGAGCTTAGGGAAGTTGGTAACCTCATTAATCTTGTTAGCTTGGATATCTCAACTAATTGGTTTTCAGGAACTATCCCAGATGTTTTTCACAGCCTTGGAAGGTTACATTCTTTTATTGCTCATTCAAATAACTTTAGTGGTTGGATACCCCCTTCCTTGTCGAGTTCAGCATCTATCTCTTTGCTTAATATGAGAAACAATTCACTGGAGGGTACCATTCATCTAAATTGTTCAGCAATGACTAGTTTGGTCTCCCTTGATCTAGGTTCTAACCGGTTTGATGGGCCTATTCCATCCAATCTTCCCTCTTGTAGGCATTTGAGTAATATAAATCTTGCCCGGAACACCTTGAGTGGTCAAATACCAGAAAGCTTCAAGAATTTTCAGACTCTCTCCTACCTCTCAATTTCAAACTCCAGCTTTTCTAATCTTTCATCTGCCTTTCAAATTTTACAACAGTGTGAGAACCTAACTACTTTGGCTCTCGCCATGAACTTCTATGGTGAAGTATTACCTGCTGATCCAACCCTTCATTTTGCAAGGTTGAAGGTTCTCATAATTGCAAATTGTAGGCTCACAGGTCCAATCCCCTAG

Protein Analysis

437

Amino Acids

47.61

Weight (kDa)

5.11

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 2e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 164 - 412 9.4e-08 Leucine-rich repeat region
LRR_8 PF13855 179 - 238 4.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 179, 1243
Acc65I GGTACC 1 cut(s) 932
AccB1I GGYRCC 1 cut(s) 932
AclWI GGATC 2 cut(s) 270, 1235
AcsI RAATTY 4 cut(s) 391, 710, 1099, 1167
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 1 cut(s) 934
AfiI CCNNNNNNNGG 3 cut(s) 586, 593, 1032
AflIII ACRYGT 2 cut(s) 83, 477
AgeI ACCGGT 1 cut(s) 993
AgsI TTSAA 9 cut(s) 53, 103, 270, 701, 846, 1096, 1131, 1166, 1267
AhlI ACTAGT 1 cut(s) 962
AjiI CACGTC 1 cut(s) 84
AjuI GAANNNNNNNTTGG 4 cut(s) 651, 681, 683, 713
AloI GAACNNNNNNTCC 2 cut(s) 698, 730
Alw21I GWGCWC 2 cut(s) 402, 416
Alw26I GTCTC 3 cut(s) 486, 644, 976
AlwI GGATC 2 cut(s) 270, 1235
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 3 cut(s) 430, 615, 1004
ApeKI GCWGC 1 cut(s) 673
ApoI RAATTY 4 cut(s) 391, 710, 1099, 1167
AseI ATTAAT 2 cut(s) 450, 747
AsiGI ACCGGT 1 cut(s) 993
Asp700I GAANNNNTTC 1 cut(s) 919
Asp718I GGTACC 1 cut(s) 932
AspS9I GGNCC 3 cut(s) 431, 1004, 1301
AsuC2I CCSGG 3 cut(s) 588, 718, 1060
AsuHPI GGTGA 2 cut(s) 34, 1235
AvaII GGWCC 1 cut(s) 1301
BanI GGYRCC 1 cut(s) 932
BanII GRGCYC 3 cut(s) 331, 402, 416
Bbv12I GWGCWC 2 cut(s) 402, 416
BbvI GCAGC 1 cut(s) 660
BccI CCATC 4 cut(s) 140, 466, 995, 1021
BciVI GTATCC 1 cut(s) 858
BcnI CCSGG 3 cut(s) 588, 718, 1060
BcoDI GTCTC 3 cut(s) 486, 644, 976
BcuI ACTAGT 1 cut(s) 962
BfaI CTAG 3 cut(s) 963, 983, 1312
BfuAI ACCTGC 2 cut(s) 179, 1243
BfuI GTATCC 1 cut(s) 858
BisI GCNGC 1 cut(s) 674
BlsI GCNGC 1 cut(s) 675
Bme1390I CCNGG 3 cut(s) 588, 718, 1060
Bme18I GGWCC 1 cut(s) 1301
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 3 cut(s) 431, 1004, 1301
BmiI GGNNCC 2 cut(s) 433, 934
BmrFI CCNGG 3 cut(s) 588, 718, 1060
BmsI GCATC 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpmI CTGGAG 2 cut(s) 947, 1120
Bpu10I CCTNAGC 2 cut(s) 57, 725
BpuEI CTTGAG 2 cut(s) 430, 1090
BpuMI CCSGG 3 cut(s) 588, 718, 1060
BsaI GGTCTC 1 cut(s) 976
BsaJI CCNNGG 3 cut(s) 609, 717, 814
BsaWI WCCGGW 1 cut(s) 993
Bsc4I CCNNNNNNNGG 3 cut(s) 586, 593, 1032
Bse118I RCCGGY 1 cut(s) 993
Bse1I ACTGG 2 cut(s) 440, 930
Bse3DI GCAATG 1 cut(s) 963
BseDI CCNNGG 3 cut(s) 609, 717, 814
BseGI GGATG 1 cut(s) 1013
BseLI CCNNNNNNNGG 3 cut(s) 586, 593, 1032
BseMI GCAATG 1 cut(s) 963
BseMII CTCAG 5 cut(s) 71, 86, 497, 525, 657
BseNI ACTGG 2 cut(s) 440, 930
BseXI GCAGC 1 cut(s) 660
BseYI CCCAGC 1 cut(s) 150
BshFI GGCC 3 cut(s) 432, 617, 1006
BshNI GGYRCC 1 cut(s) 932
BshTI ACCGGT 1 cut(s) 993
BsiHKAI GWGCWC 2 cut(s) 402, 416
BsiSI CCGG 4 cut(s) 587, 717, 994, 1060
BslI CCNNNNNNNGG 3 cut(s) 586, 593, 1032
BsmAI GTCTC 3 cut(s) 486, 644, 976
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 3 cut(s) 432, 617, 1006
Bso31I GGTCTC 1 cut(s) 976
Bsp1286I GDGCHC 3 cut(s) 331, 402, 416
Bsp143I GATC 4 cut(s) 66, 262, 979, 1240
BspANI GGCC 3 cut(s) 432, 617, 1006
BspCNI CTCAG 5 cut(s) 70, 85, 496, 526, 656
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 433, 934
BspMI ACCTGC 2 cut(s) 179, 1243
BspPI GGATC 2 cut(s) 270, 1235
BspT107I GGYRCC 1 cut(s) 932
BspTNI GGTCTC 1 cut(s) 976
BsrDI GCAATG 1 cut(s) 963
BsrFI RCCGGY 1 cut(s) 993
BsrI ACTGG 2 cut(s) 440, 930
BssAI RCCGGY 1 cut(s) 993
BssECI CCNNGG 3 cut(s) 609, 717, 814
BssMI GATC 4 cut(s) 66, 262, 979, 1240
BssT1I CCWWGG 2 cut(s) 609, 814
Bst4CI ACNGT 1 cut(s) 1179
Bst6I CTCTTC 2 cut(s) 172, 211
BstDEI CTNAG 8 cut(s) 57, 72, 323, 403, 483, 534, 643, 725
BstEII GGTNACC 2 cut(s) 575, 737
BstENI CCTNNNNNAGG 1 cut(s) 1030
BstF5I GGATG 1 cut(s) 1013
BstKTI GATC 4 cut(s) 69, 265, 982, 1243
BstMAI GTCTC 3 cut(s) 486, 644, 976
BstMBI GATC 4 cut(s) 66, 262, 979, 1240
BstMWI GCNNNNNNNGC 2 cut(s) 544, 679
BstNSI RCATGY 1 cut(s) 481
BstPI GGTNACC 2 cut(s) 575, 737
BstSCI CCNGG 3 cut(s) 586, 716, 1058
BstV1I GCAGC 1 cut(s) 660
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 1 cut(s) 858
BsuRI GGCC 3 cut(s) 432, 617, 1006
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 1013
BtsIMutI CAGTG 2 cut(s) 923, 1184
BveI ACCTGC 2 cut(s) 179, 1243
CaiI CAGNNNCTG 1 cut(s) 79
CciI TCATGA 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 993
Cfr13I GGNCC 3 cut(s) 431, 1004, 1301
Csp6I GTAC 1 cut(s) 933
CspAI ACCGGT 1 cut(s) 993
CviAII CATG 4 cut(s) 121, 370, 478, 1210
CviQI GTAC 1 cut(s) 933
DdeI CTNAG 8 cut(s) 57, 72, 323, 403, 483, 534, 643, 725
DpnI GATC 4 cut(s) 68, 264, 981, 1242
DpnII GATC 4 cut(s) 66, 262, 979, 1240
Eam1104I CTCTTC 2 cut(s) 172, 211
EarI CTCTTC 2 cut(s) 172, 211
Ecl136II GAGCTC 2 cut(s) 400, 414
Eco130I CCWWGG 2 cut(s) 609, 814
Eco24I GRGCYC 3 cut(s) 331, 402, 416
Eco31I GGTCTC 1 cut(s) 976
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 1301
Eco53kI GAGCTC 2 cut(s) 400, 414
Eco57I CTGAAG 1 cut(s) 678
Eco91I GGTNACC 2 cut(s) 575, 737
EcoICRI GAGCTC 2 cut(s) 400, 414
EcoNI CCTNNNNNAGG 1 cut(s) 1030
EcoO65I GGTNACC 2 cut(s) 575, 737
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 609, 814
EcoT22I ATGCAT 1 cut(s) 109
EcoT38I GRGCYC 3 cut(s) 331, 402, 416
ErhI CCWWGG 2 cut(s) 609, 814
FaeI CATG 4 cut(s) 124, 373, 481, 1213
FatI CATG 4 cut(s) 120, 369, 477, 1209
Fnu4HI GCNGC 1 cut(s) 674
FokI GGATG 1 cut(s) 1000
FriOI GRGCYC 3 cut(s) 331, 402, 416
Fsp4HI GCNGC 1 cut(s) 674
FspBI CTAG 3 cut(s) 963, 983, 1312
GluI GCNGC 1 cut(s) 674
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 2 cut(s) 947, 1120
HaeIII GGCC 3 cut(s) 432, 617, 1006
HapII CCGG 4 cut(s) 587, 717, 994, 1060
Hin1II CATG 4 cut(s) 124, 373, 481, 1213
HindIII AAGCTT 1 cut(s) 1090
HinfI GANTC 5 cut(s) 25, 230, 289, 299, 1108
HpaII CCGG 4 cut(s) 587, 717, 994, 1060
HphI GGTGA 2 cut(s) 34, 1235
Hpy188I TCNGA 5 cut(s) 75, 172, 298, 486, 1107
Hpy188III TCNNGA 4 cut(s) 121, 701, 786, 1096
HpyAV CCTTC 5 cut(s) 653, 813, 882, 1259, 1261
HpyCH4III ACNGT 1 cut(s) 1179
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 5 cut(s) 107, 133, 676, 1259, 1283
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 679
HpyF3I CTNAG 8 cut(s) 57, 72, 323, 403, 483, 534, 643, 725
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 4 cut(s) 124, 373, 481, 1213
KpnI GGTACC 1 cut(s) 936
Kzo9I GATC 4 cut(s) 66, 262, 979, 1240
LmnI GCTCC 2 cut(s) 611, 721
Lsp1109I GCAGC 1 cut(s) 660
LweI GCATC 1 cut(s) 899
MaeI CTAG 3 cut(s) 963, 983, 1312
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 4 cut(s) 200, 575, 737, 822
MalI GATC 4 cut(s) 68, 264, 981, 1242
MboI GATC 4 cut(s) 66, 262, 979, 1240
MboII GAAGA 4 cut(s) 159, 198, 204, 1013
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 3 cut(s) 331, 402, 416
MlyI GAGTC 1 cut(s) 1102
MmeI TCCRAC 3 cut(s) 240, 842, 1268
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 919
MseI TTAA 4 cut(s) 225, 450, 747, 906
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 4 cut(s) 587, 717, 994, 1060
MspR9I CCNGG 3 cut(s) 588, 718, 1060
MunI CAATTG 1 cut(s) 689
Mva1269I GAATGC 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 544, 679
NciI CCSGG 3 cut(s) 588, 718, 1060
NdeII GATC 4 cut(s) 66, 262, 979, 1240
NlaIII CATG 4 cut(s) 124, 373, 481, 1213
NlaIV GGNNCC 2 cut(s) 433, 934
NmeAIII GCCGAG 1 cut(s) 606
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 481
PagI TCATGA 1 cut(s) 120
PciI ACATGT 1 cut(s) 477
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 919
PfeI GAWTC 4 cut(s) 25, 230, 289, 299
PinAI ACCGGT 1 cut(s) 993
PkrI GCNGC 1 cut(s) 675
PleI GAGTC 1 cut(s) 1102
PpsI GAGTC 1 cut(s) 1102
PscI ACATGT 1 cut(s) 477
PshBI ATTAAT 2 cut(s) 450, 747
Psp124BI GAGCTC 2 cut(s) 402, 416
PspEI GGTNACC 2 cut(s) 575, 737
PspFI CCCAGC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 433, 934
PspPI GGNCC 3 cut(s) 431, 1004, 1301
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 934
RsaNI GTAC 1 cut(s) 933
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 2 cut(s) 402, 416
SaqAI TTAA 4 cut(s) 225, 450, 747, 906
SatI GCNGC 1 cut(s) 674
Sau3AI GATC 4 cut(s) 66, 262, 979, 1240
Sau96I GGNCC 3 cut(s) 431, 1004, 1301
SchI GAGTC 1 cut(s) 1102
ScrFI CCNGG 3 cut(s) 588, 718, 1060
SduI GDGCHC 3 cut(s) 331, 402, 416
SfaNI GCATC 1 cut(s) 899
SinI GGWCC 1 cut(s) 1301
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 2 cut(s) 409, 1069
SmoI CTYRAG 2 cut(s) 409, 1069
SpeI ACTAGT 1 cut(s) 962
SspMI CTAG 3 cut(s) 963, 983, 1312
SstI GAGCTC 2 cut(s) 402, 416
StyD4I CCNGG 3 cut(s) 586, 716, 1058
StyI CCWWGG 2 cut(s) 609, 814
TaaI ACNGT 1 cut(s) 1179
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 382, 881
TfiI GAWTC 4 cut(s) 25, 230, 289, 299
Tru1I TTAA 4 cut(s) 225, 450, 747, 906
Tru9I TTAA 4 cut(s) 225, 450, 747, 906
TscAI CASTG 2 cut(s) 930, 1184
TseI GCWGC 1 cut(s) 673
TspDTI ATGAA 8 cut(s) 109, 198, 386, 611, 929, 1143, 1226, 1241
TspRI CASTG 2 cut(s) 930, 1184
VpaK11BI GGWCC 1 cut(s) 1301
VspI ATTAAT 2 cut(s) 450, 747
XagI CCTNNNNNAGG 1 cut(s) 1030
XapI RAATTY 4 cut(s) 391, 710, 1099, 1167
XceI RCATGY 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 919
XspI CTAG 3 cut(s) 963, 983, 1312
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.