pycom16g00710

Phytosulfokine receptor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
425732 .. 427722
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00710.1

Sequence Viewer

Length: 1902 bp
ATGGATGCTCAGGATTTCTGGGTGGTGATTGTTATTGGCTTTTGCTTCCAAGCTCAAATCTTGAGCTCTCAGAACTTGACATGCAATCCAAATGATGTGAAAGCATTGGAGGATTTCACGTCAAGTTTAAAAACTGTGATCCACGGGTGGGGAAGCAGTTTCTCATCTGATTGCTGTAAATGGGAAGGCATCACTTGCAACTCTTCATCCTCTCTCGGAATTGGATTGAACAATTCAATCGATACCTTTCGAGTGGTTAAGTTGGAGCTTCCAAGTAAAAGACTAGCAGGCAATCTCTCTGCATCTTTAGGCACCTTGGACCAGCTTAGAACCCTCAATCTCTCTCAAAATTACCTCATAGGCACGCTTCCAACTGCCCTTTTCCGTTTGCGAAATTTAGAACTCTTAGACTTGAGCTTTAATGATTTTTCCGGCCCCATTCCTTTTGGTATTGATTTACCTTCAATCAAGTTCCTTGACATTTCTCAAAACCTTTTGAATGGTTCCCTTCCTGGCAGCATTTGTGACAACAATTCTACTCAACTTCGGGTACTCAACGTGGCCGCTAACTACTTCTCTGGCAATCTTCCACCAGGTTTTGGCAATTGTACTTCCTTGGAGGACCTTGACCTGAGTACAAATTATCTTACAGGCACAGATGATGGTATATCCAAAGCTTTATTTCGGCTGCCAAAGCTAACCCAATTGAGCATTCAAGACAACAATCTAGCCGAGCCACTCAGCGAAGAAATCGGGAACCTCGTTAACCTTGTTCGTTTGGATATCTCAAGGAATGGGTTTTCAGGAACAATCCCGGATGTTTTCTACAGCCTTGGAAGATTACAGAATTTTGTAGCTCATTCGAATAGGTTTGGTGGTCAGATACCTCCTTCCTTGTCGAGTTCATCGACTCTTTCTTTGCTTAATTTGAGAAACAATTCATTGCAGGGCTCAATCGCTCTAAATTGTTCAGCAATGATTAGTTTGACCTCTCTTGATCTCGGTTCCAATAAGTTTGATGGGCCTATTCCCTCCAATCTTCCTTCTTGTCGACATTTGAGTGATGTCAATCTTGCCCGTAACAACTTCACTGGCGAAATACCAGAAAGCTTCAAGAATTTCCATAGCCTCTCTTACCTCTCCCTGTCAAATTCTAGCCTTTCCAATATCTCTTATGTACTTCAAATTTTACAGCAGTGTCAGAACCTGACTGCTTTGCACCTTCATTTTGAAAAGTTGAAGGTTCTTGTTATTGCAAACTGTAGGCTCACAGGTGTAATACCCCAATGGTTGAGTACTAGCAGCAGATTGCAGTTGTTGGATATATCATGGAACCAATTGGAAGGAATAATTCCAGTCTGGTTTGGCAATTTTAGCAATCTCTTCTACTTGGACATATCTAACAATTCTCTCAGCGGCGAAATCCCAAGAAGCATAACAGGGCTTCAGTGCCTCATTGCGGGTAGGATCTCAATTGAAGAACCTTCCCCTGTTTTCCCTCTTTTCATGTGGATGAATGTGAGTGGGCGAGGCTTGCACTTGCAGTACAATAAAGTTTGGAGCCTTCGGCCTACATTGGACTTTAGCAACAACAATCTCAGTGGAGCAATCTGGCCAGACTTCAGGAAGTTGAGGTTGCTTCATGTTTTGGATTTGAACAACAACAGATTATCAGGACCAATTCCGAGTAGTTTATCTAAGATGGTGAACTTGGAGATTCTGGATTTGTCACATAACGAGCTTTCGGGGATAATCCCGCCTTCGTTGGTTGACCTTAGCTTCTTGTCCAAGTTTAGTGTTGCTGACAACGAATTGGCTTGTTCTCGTGCATTTACGTTATGTTTCTTTAGTTATTTTAGTACTTTAAGCTATTTTCGTGTGTTTGTAGGTCCAAAGGGCTAA

Protein Analysis

634

Amino Acids

69.67

Weight (kDa)

5.88

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 67 7.1e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 152 - 335 4.5e-10 Leucine-rich repeat region
LRR_8 PF13855 181 - 243 4.6e-06 Leucine rich repeat
LRR_8 PF13855 412 - 471 6e-11 Leucine rich repeat
LRR_8 PF13855 546 - 605 6.7e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 599
AccI GTMKAC 1 cut(s) 1051
AciI CCGC 4 cut(s) 564, 1416, 1460, 1757
AclWI GGATC 2 cut(s) 133, 1475
AcoI YGGCCR 2 cut(s) 561, 1613
AcsI RAATTY 5 cut(s) 394, 847, 1117, 1150, 1185
AcuI CTGAAG 2 cut(s) 1430, 1606
AfaI GTAC 7 cut(s) 552, 610, 637, 1179, 1297, 1547, 1861
AfiI CCNNNNNNNGG 3 cut(s) 148, 599, 1459
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 2 cut(s) 511, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 2 cut(s) 133, 1475
AlwNI CAGNNNCTG 1 cut(s) 1207
AoxI GGCC 5 cut(s) 433, 561, 1022, 1568, 1613
ApeKI GCWGC 3 cut(s) 516, 688, 1302
ApoI RAATTY 5 cut(s) 394, 847, 1117, 1150, 1185
ArsI GACNNNNNNTTYG 2 cut(s) 901, 933
Asp700I GAANNNNTTC 1 cut(s) 937
AspS9I GGNCC 6 cut(s) 319, 434, 622, 1022, 1676, 1889
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 2 cut(s) 37, 1717
AsuII TTCGAA 1 cut(s) 863
AvaII GGWCC 4 cut(s) 319, 622, 1676, 1889
BalI TGGCCA 1 cut(s) 1615
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 2 cut(s) 68, 953
BauI CACGAG 1 cut(s) 1824
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 528, 675, 1314
BccI CCATC 3 cut(s) 656, 1013, 1696
BciT130I CCWGG 2 cut(s) 513, 594
BcnI CCSGG 1 cut(s) 815
BfaI CTAG 4 cut(s) 284, 728, 1155, 1299
BfmI CTRYAG 2 cut(s) 826, 1261
BisI GCNGC 5 cut(s) 517, 564, 689, 1303, 1417
BlsI GCNGC 5 cut(s) 518, 565, 690, 1304, 1418
BmcAI AGTACT 2 cut(s) 1297, 1861
Bme1390I CCNGG 3 cut(s) 513, 594, 815
Bme18I GGWCC 4 cut(s) 319, 622, 1676, 1889
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 6 cut(s) 319, 434, 622, 1022, 1676, 1889
BmiI GGNNCC 7 cut(s) 313, 436, 505, 758, 1006, 1334, 1562
BmrFI CCNGG 3 cut(s) 513, 594, 815
BmsI GCATC 2 cut(s) 198, 311
Bpu10I CCTNAGC 2 cut(s) 9, 1775
Bpu14I TTCGAA 1 cut(s) 863
BpuEI CTTGAG 3 cut(s) 82, 433, 772
BpuMI CCSGG 1 cut(s) 815
Bsa29I ATCGAT 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 1068
BsaJI CCNNGG 4 cut(s) 142, 315, 615, 832
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 599, 1459
Bse1I ACTGG 2 cut(s) 1096, 1355
Bse3DI GCAATG 3 cut(s) 941, 981, 1455
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 2 cut(s) 513, 594
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 142, 315, 615, 832
BseGI GGATG 4 cut(s) 10, 206, 823, 1518
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 3 cut(s) 148, 599, 1459
BseMI GCAATG 3 cut(s) 941, 981, 1455
BseMII CTCAG 6 cut(s) 23, 83, 623, 754, 1426, 1612
BseNI ACTGG 2 cut(s) 1096, 1355
BseXI GCAGC 3 cut(s) 528, 675, 1314
BshFI GGCC 5 cut(s) 435, 563, 1024, 1570, 1615
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 2 cut(s) 432, 815
BslI CCNNNNNNNGG 3 cut(s) 148, 599, 1459
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 5 cut(s) 435, 563, 1024, 1570, 1615
Bsp119I TTCGAA 1 cut(s) 863
Bsp1286I GDGCHC 2 cut(s) 68, 953
Bsp143I GATC 3 cut(s) 138, 997, 1467
BspACI CCGC 4 cut(s) 564, 1416, 1460, 1757
BspANI GGCC 5 cut(s) 435, 563, 1024, 1570, 1615
BspCNI CTCAG 6 cut(s) 22, 82, 624, 753, 1425, 1611
BspDI ATCGAT 1 cut(s) 240
BspLI GGNNCC 7 cut(s) 313, 436, 505, 758, 1006, 1334, 1562
BspPI GGATC 2 cut(s) 133, 1475
BspT104I TTCGAA 1 cut(s) 863
BspT107I GGYRCC 1 cut(s) 311
BsrDI GCAATG 3 cut(s) 941, 981, 1455
BsrI ACTGG 2 cut(s) 1096, 1355
BssECI CCNNGG 4 cut(s) 142, 315, 615, 832
BssMI GATC 3 cut(s) 138, 997, 1467
BssSI CACGAG 1 cut(s) 1824
BssT1I CCWWGG 3 cut(s) 315, 615, 832
Bst2BI CACGAG 1 cut(s) 1824
Bst2UI CCWGG 2 cut(s) 513, 594
Bst4CI ACNGT 2 cut(s) 136, 1262
Bst6I CTCTTC 2 cut(s) 208, 1388
BstAPI GCANNNNNTGC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 863
BstC8I GCNNGC 3 cut(s) 289, 365, 1535
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 4 cut(s) 10, 206, 823, 1518
BstKTI GATC 3 cut(s) 141, 1000, 1470
BstMBI GATC 3 cut(s) 138, 997, 1467
BstMWI GCNNNNNNNGC 4 cut(s) 195, 694, 1374, 1534
BstNI CCWGG 2 cut(s) 513, 594
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 3 cut(s) 511, 592, 813
BstSFI CTRYAG 2 cut(s) 826, 1261
BstV1I GCAGC 3 cut(s) 528, 675, 1314
BstX2I RGATCY 1 cut(s) 1467
BstYI RGATCY 1 cut(s) 1467
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 5 cut(s) 435, 563, 1024, 1570, 1615
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 142
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 4 cut(s) 10, 206, 823, 1518
BtsI GCAGTG 1 cut(s) 1202
BtsIMutI CAGTG 4 cut(s) 1089, 1202, 1454, 1606
Cac8I GCNNGC 3 cut(s) 289, 365, 1535
CaiI CAGNNNCTG 1 cut(s) 1207
Cfr13I GGNCC 6 cut(s) 319, 434, 622, 1022, 1676, 1889
ClaI ATCGAT 1 cut(s) 240
CsiI ACCWGGT 1 cut(s) 592
Csp6I GTAC 7 cut(s) 551, 609, 636, 1178, 1296, 1546, 1860
CspCI CAANNNNNGTGG 2 cut(s) 1582, 1617
CviAII CATG 4 cut(s) 81, 1329, 1507, 1643
CviQI GTAC 7 cut(s) 551, 609, 636, 1178, 1296, 1546, 1860
DpnI GATC 3 cut(s) 140, 999, 1469
DpnII GATC 3 cut(s) 138, 997, 1467
DraI TTTAAA 1 cut(s) 129
EaeI YGGCCR 2 cut(s) 561, 1613
Eam1104I CTCTTC 2 cut(s) 208, 1388
EarI CTCTTC 2 cut(s) 208, 1388
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 3 cut(s) 315, 615, 832
Eco24I GRGCYC 2 cut(s) 68, 953
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 4 cut(s) 319, 622, 1676, 1889
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 1430, 1606
EcoICRI GAGCTC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 2 cut(s) 511, 592
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 3 cut(s) 315, 615, 832
EcoT38I GRGCYC 2 cut(s) 68, 953
ErhI CCWWGG 3 cut(s) 315, 615, 832
FaeI CATG 4 cut(s) 84, 1332, 1510, 1646
FatI CATG 4 cut(s) 80, 1328, 1506, 1642
FauI CCCGC 2 cut(s) 1453, 1764
FblI GTMKAC 1 cut(s) 1051
Fnu4HI GCNGC 5 cut(s) 517, 564, 689, 1303, 1417
FokI GGATG 4 cut(s) 17, 193, 830, 1525
FriOI GRGCYC 2 cut(s) 68, 953
Fsp4HI GCNGC 5 cut(s) 517, 564, 689, 1303, 1417
FspBI CTAG 4 cut(s) 284, 728, 1155, 1299
GluI GCNGC 5 cut(s) 517, 564, 689, 1303, 1417
HaeIII GGCC 5 cut(s) 435, 563, 1024, 1570, 1615
HapII CCGG 2 cut(s) 432, 815
Hin1II CATG 4 cut(s) 84, 1332, 1510, 1646
HincII GTYRAC 3 cut(s) 766, 1052, 1771
HindII GTYRAC 3 cut(s) 766, 1052, 1771
HindIII AAGCTT 2 cut(s) 675, 1108
HinfI GANTC 2 cut(s) 910, 1717
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 2 cut(s) 432, 815
HphI GGTGA 2 cut(s) 37, 1717
Hpy166II GTNNAC 4 cut(s) 766, 1052, 1708, 1771
Hpy188I TCNGA 6 cut(s) 72, 169, 218, 882, 1203, 1686
Hpy8I GTNNAC 4 cut(s) 766, 1052, 1708, 1771
HpyCH4III ACNGT 2 cut(s) 136, 1262
HpyCH4IV ACGT 3 cut(s) 119, 558, 1835
HpyF10VI GCNNNNNNNGC 4 cut(s) 195, 694, 1374, 1534
HpySE526I ACGT 3 cut(s) 119, 558, 1835
Hsp92II CATG 4 cut(s) 84, 1332, 1510, 1646
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 3 cut(s) 138, 997, 1467
LmnI GCTCC 3 cut(s) 265, 1560, 1604
Lsp1109I GCAGC 3 cut(s) 528, 675, 1314
LweI GCATC 2 cut(s) 198, 311
MabI ACCWGGT 1 cut(s) 592
MaeI CTAG 4 cut(s) 284, 728, 1155, 1299
MaeII ACGT 3 cut(s) 119, 558, 1835
MaeIII GTNAC 3 cut(s) 524, 1079, 1728
MalI GATC 3 cut(s) 140, 999, 1469
MboI GATC 3 cut(s) 138, 997, 1467
MboII GAAGA 7 cut(s) 195, 578, 758, 849, 1031, 1375, 1490
MfeI CAATTG 4 cut(s) 604, 704, 1337, 1473
MflI RGATCY 1 cut(s) 1467
MhlI GDGCHC 2 cut(s) 68, 953
MlsI TGGCCA 1 cut(s) 1615
MluNI TGGCCA 1 cut(s) 1615
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 3 cut(s) 243, 395, 1299
Mox20I TGGCCA 1 cut(s) 1615
MroXI GAANNNNTTC 1 cut(s) 937
MscI TGGCCA 1 cut(s) 1615
MseI TTAA 6 cut(s) 128, 258, 420, 765, 924, 1865
MslI CAYNNNNRTG 2 cut(s) 1059, 1511
Msp20I TGGCCA 1 cut(s) 1615
MspA1I CMGCKG 1 cut(s) 1416
MspI CCGG 2 cut(s) 432, 815
MspR9I CCNGG 3 cut(s) 513, 594, 815
MunI CAATTG 4 cut(s) 604, 704, 1337, 1473
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 2 cut(s) 513, 594
MwoI GCNNNNNNNGC 4 cut(s) 195, 694, 1374, 1534
NciI CCSGG 1 cut(s) 815
NdeII GATC 3 cut(s) 138, 997, 1467
NlaIII CATG 4 cut(s) 84, 1332, 1510, 1646
NlaIV GGNNCC 7 cut(s) 313, 436, 505, 758, 1006, 1334, 1562
NmeAIII GCCGAG 1 cut(s) 757
NmuCI GTSAC 2 cut(s) 524, 1728
NspI RCATGY 1 cut(s) 84
NspV TTCGAA 1 cut(s) 863
PcsI WCGNNNNNNNCGW 2 cut(s) 759, 905
PctI GAATGC 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 1 cut(s) 1717
PflMI CCANNNNNTGG 1 cut(s) 599
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 5 cut(s) 518, 565, 690, 1304, 1418
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
PpuMI RGGWCCY 1 cut(s) 622
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 2 cut(s) 511, 592
PspGI CCWGG 2 cut(s) 511, 592
PspN4I GGNNCC 7 cut(s) 313, 436, 505, 758, 1006, 1334, 1562
PspPI GGNCC 6 cut(s) 319, 434, 622, 1022, 1676, 1889
PspPPI RGGWCCY 1 cut(s) 622
PstNI CAGNNNCTG 1 cut(s) 1207
PsuI RGATCY 1 cut(s) 1467
RsaI GTAC 7 cut(s) 552, 610, 637, 1179, 1297, 1547, 1861
RsaNI GTAC 7 cut(s) 551, 609, 636, 1178, 1296, 1546, 1860
RseI CAYNNNNRTG 2 cut(s) 1059, 1511
SacI GAGCTC 1 cut(s) 68
SalI GTCGAC 1 cut(s) 1050
SaqAI TTAA 6 cut(s) 128, 258, 420, 765, 924, 1865
SatI GCNGC 5 cut(s) 517, 564, 689, 1303, 1417
Sau3AI GATC 3 cut(s) 138, 997, 1467
Sau96I GGNCC 6 cut(s) 319, 434, 622, 1022, 1676, 1889
ScaI AGTACT 2 cut(s) 1297, 1861
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 3 cut(s) 513, 594, 815
SduI GDGCHC 2 cut(s) 68, 953
SexAI ACCWGGT 1 cut(s) 592
SfaNI GCATC 2 cut(s) 198, 311
SfcI CTRYAG 2 cut(s) 826, 1261
SfuI TTCGAA 1 cut(s) 863
SinI GGWCC 4 cut(s) 319, 622, 1676, 1889
SmiMI CAYNNNNRTG 2 cut(s) 1059, 1511
SmlI CTYRAG 3 cut(s) 61, 412, 787
SmoI CTYRAG 3 cut(s) 61, 412, 787
SsiI CCGC 4 cut(s) 564, 1416, 1460, 1757
SspMI CTAG 4 cut(s) 284, 728, 1155, 1299
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 3 cut(s) 511, 592, 813
StyI CCWWGG 3 cut(s) 315, 615, 832
TaaI ACNGT 2 cut(s) 136, 1262
TaiI ACGT 3 cut(s) 122, 561, 1838
TaqI TCGA 6 cut(s) 240, 250, 863, 899, 908, 1051
TatI WGTACW 6 cut(s) 608, 635, 1177, 1295, 1545, 1859
TauI GCSGC 2 cut(s) 566, 1419
TfiI GAWTC 1 cut(s) 1717
Tru1I TTAA 6 cut(s) 128, 258, 420, 765, 924, 1865
Tru9I TTAA 6 cut(s) 128, 258, 420, 765, 924, 1865
TscAI CASTG 4 cut(s) 1096, 1202, 1454, 1606
TseFI GTSAC 2 cut(s) 524, 1728
TseI GCWGC 3 cut(s) 516, 688, 1302
Tsp45I GTSAC 2 cut(s) 524, 1728
TspDTI ATGAA 7 cut(s) 195, 894, 930, 1214, 1495, 1529, 1631
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 4 cut(s) 1096, 1202, 1454, 1606
Van91I CCANNNNNTGG 1 cut(s) 599
VpaK11BI GGWCC 4 cut(s) 319, 622, 1676, 1889
XapI RAATTY 5 cut(s) 394, 847, 1117, 1150, 1185
XceI RCATGY 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 1051
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 4 cut(s) 284, 728, 1155, 1299
ZrmI AGTACT 2 cut(s) 1297, 1861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.