Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Reverse (-)

64085871 .. 64087067

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG438100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGGATTCTAAAAATCTTGCTGGTCATCCTTGTTACTGGGTTTTGCTTCCAAACTCCAGTTTTGAGCTTTCAGAACCTGACATGCAATCCAAATGACTTTCAAGCATTGCAGGATTTCATGACAGGTTTATCAACAAAAGTAGGTGGGTGGGGAAATGATTTCTCTTCCAATTGCTGTAAATGGCCAGGTATCACTTGCAACTCTTCATCTTCTCTTGGATTGAATGATTCTATTGATACCTATAGAGTGGTTAAGTTGGAGCTTCCGAGTAAAAGACTAGTGGGAAAACTGTCGGAGTCTATAGGCAATTTGGAACAGCTAAGGACACTTAACCTCTCCCACAATTTTTTAAAAGCCTCACTTCCAGTTTCATTGTTCCATTTGCCAAATTTACGACTGTTAGACCTGAGCTTTAATGACATTTCTGGTCCCATTCCAGTTGTTATTGATTTACATTCAATCCAGTCCATTGACATGTCAGAAAACATCTTGAACAGTACTCTTCCAGCAAGTATCTGCGTCAATTCTCATCACCTTCGTGTGCTGAACCTAGGTGTGAACTACTTGTCTGGTAGCCTCCCACCAGGTCTTGGCAGTTGTAGTTCCTTGGAAGACCTCCGTCTCAACATGAATGAACTCAGAGGTGGAATATCTGAAGGTTTAGTTCGGCTGCAAAAGCTAAACCAGTTGAGAATTCAAGGTAATCAGTTTTCCGGGCCACTGAGCAAAGAAGTTGGTAACCTCATCAACCTTGTTTGTTTGGATATCTCGACTAATTCGTTTTCAGGAACTATCCCAGATGTTTTCCACAGCCTGGGAAGGTTACAGTTTTTTATTGCTGATGCAAATAATTTTAGTGGTCAAATACCACCTTCCCTGTCAAATTCCCCAACTATTTCTTTGCTTGGTGTGAGAAACAATTCACTGGAGGGTACCATCCAACTGAATTGTTCAGCAATGACTAGTTTGGTCTCTCTTGATCTAGGTTCCAATCGGTTTGATGGGCCTATTCCATCCAATCTTCCCTCTTGTAGGCATTTGAATAATATAAATCTTGCCCGGAACAATTTGAGCGGCCAAATCCCAGAAAGTTTCAAGAATTTTCATACTCTTTCTTACCTATCACTCTCAAACTCCAGCATTTCTAATATCTTTCATCTGCCCTTCAAATATTACAGCAGTGTCAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

398

Amino Acids

43.34

Weight (kDa)

7.59

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 68	7.3e-08	Leucine rich repeat N-terminal domain
LRR_8	PF13855	85 - 142	4.1e-08	Leucine rich repeat
LRR_4	PF12799	107 - 143	7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	935
AccB1I	GGYRCC	1 cut(s)	935
AccB7I	CCANNNNNTGG	2 cut(s)	593, 817
AccBSI	CCGCTC	1 cut(s)	1077
AciI	CCGC	1 cut(s)	1077
AcoI	YGGCCR	2 cut(s)	185, 1078
AcsI	RAATTY	4 cut(s)	391, 696, 886, 1102
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	2 cut(s)	502, 937
AfiI	CCNNNNNNNGG	3 cut(s)	593, 817, 1035
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	8 cut(s)	104, 226, 462, 496, 701, 1045, 1099, 1171
AhlI	ACTAGT	2 cut(s)	280, 965
AjnI	CCWGG	3 cut(s)	187, 586, 816
AleI	CACNNNNGTG	1 cut(s)	540
AluBI	AGCT	5 cut(s)	69, 265, 322, 414, 682
AluI	AGCT	5 cut(s)	69, 265, 322, 414, 682
Alw26I	GTCTC	2 cut(s)	629, 979
AlwNI	CAGNNNCTG	1 cut(s)	79
AoxI	GGCC	4 cut(s)	185, 719, 1007, 1078
ApeKI	GCWGC	1 cut(s)	673
ApoI	RAATTY	4 cut(s)	391, 696, 886, 1102
Asp700I	GAANNNNTTC	1 cut(s)	922
Asp718I	GGTACC	1 cut(s)	935
AspA2I	CCTAGG	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	431, 719, 1007
AsuC2I	CCSGG	2 cut(s)	718, 1063
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	431
AvrII	CCTAGG	1 cut(s)	553
BalI	TGGCCA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	935
BbsI	GAAGAC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	660
BccI	CCATC	3 cut(s)	947, 998, 1024
BciT130I	CCWGG	3 cut(s)	189, 588, 818
BcnI	CCSGG	2 cut(s)	718, 1063
BcoDI	GTCTC	2 cut(s)	629, 979
BcuI	ACTAGT	2 cut(s)	280, 965
BfaI	CTAG	4 cut(s)	281, 554, 966, 986
BfmI	CTRYAG	2 cut(s)	244, 303
BisI	GCNGC	2 cut(s)	674, 1078
BlnI	CCTAGG	1 cut(s)	553
BlsI	GCNGC	2 cut(s)	675, 1079
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	5 cut(s)	189, 588, 718, 818, 1063
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	3 cut(s)	431, 719, 1007
BmiI	GGNNCC	3 cut(s)	433, 937, 991
BmrFI	CCNGG	5 cut(s)	189, 588, 718, 818, 1063
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	835
BmuI	ACTGGG	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	3 cut(s)	42, 950, 1123
Bpu10I	CCTNAGC	2 cut(s)	323, 410
BpuMI	CCSGG	2 cut(s)	718, 1063
BsaI	GGTCTC	1 cut(s)	979
BsaJI	CCNNGG	3 cut(s)	553, 609, 817
Bsc4I	CCNNNNNNNGG	3 cut(s)	593, 817, 1035
Bse1I	ACTGG	7 cut(s)	43, 59, 368, 440, 466, 688, 933
Bse3DI	GCAATG	2 cut(s)	107, 966
BseBI	CCWGG	3 cut(s)	189, 588, 818
BseDI	CCNNGG	3 cut(s)	553, 609, 817
BseGI	GGATG	3 cut(s)	27, 939, 1016
BseLI	CCNNNNNNNGG	3 cut(s)	593, 817, 1035
BseMI	GCAATG	2 cut(s)	107, 966
BseMII	CTCAG	3 cut(s)	401, 655, 716
BseNI	ACTGG	7 cut(s)	43, 59, 368, 440, 466, 688, 933
BseXI	GCAGC	1 cut(s)	660
BshFI	GGCC	4 cut(s)	187, 721, 1009, 1080
BshNI	GGYRCC	1 cut(s)	935
BsiSI	CCGG	2 cut(s)	717, 1063
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	3 cut(s)	593, 817, 1035
BsmAI	GTCTC	2 cut(s)	629, 979
BsmBI	CGTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	4 cut(s)	187, 721, 1009, 1080
Bso31I	GGTCTC	1 cut(s)	979
Bsp143I	GATC	1 cut(s)	982
BspACI	CCGC	1 cut(s)	1077
BspANI	GGCC	4 cut(s)	187, 721, 1009, 1080
BspCNI	CTCAG	3 cut(s)	402, 654, 717
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	433, 937, 991
BspT107I	GGYRCC	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	979
BsrBI	CCGCTC	1 cut(s)	1077
BsrDI	GCAATG	2 cut(s)	107, 966
BsrI	ACTGG	7 cut(s)	43, 59, 368, 440, 466, 688, 933
BssECI	CCNNGG	3 cut(s)	553, 609, 817
BssMI	GATC	1 cut(s)	982
BssT1I	CCWWGG	2 cut(s)	553, 609
Bst2UI	CCWGG	3 cut(s)	189, 588, 818
Bst4CI	ACNGT	4 cut(s)	294, 402, 500, 831
Bst6I	CTCTTC	3 cut(s)	172, 211, 510
BstDEI	CTNAG	4 cut(s)	323, 410, 641, 725
BstEII	GGTNACC	1 cut(s)	740
BstENI	CCTNNNNNAGG	1 cut(s)	1033
BstF5I	GGATG	3 cut(s)	27, 939, 1016
BstKTI	GATC	1 cut(s)	985
BstMAI	GTCTC	2 cut(s)	629, 979
BstMBI	GATC	1 cut(s)	982
BstMWI	GCNNNNNNNGC	1 cut(s)	679
BstNI	CCWGG	3 cut(s)	189, 588, 818
BstNSI	RCATGY	2 cut(s)	87, 481
BstPAI	GACNNNNGTC	1 cut(s)	621
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	5 cut(s)	187, 586, 716, 816, 1061
BstSFI	CTRYAG	2 cut(s)	244, 303
BstV1I	GCAGC	1 cut(s)	660
BstV2I	GAAGAC	1 cut(s)	621
BsuRI	GGCC	4 cut(s)	187, 721, 1009, 1080
BtsCI	GGATG	3 cut(s)	27, 939, 1016
BtsI	GCAGTG	1 cut(s)	1189
BtsIMutI	CAGTG	3 cut(s)	722, 926, 1189
CaiI	CAGNNNCTG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	431, 719, 1007
CseI	GACGC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	501, 936
CviAII	CATG	4 cut(s)	84, 121, 478, 631
CviQI	GTAC	2 cut(s)	501, 936
DdeI	CTNAG	4 cut(s)	323, 410, 641, 725
DpnI	GATC	1 cut(s)	984
DpnII	GATC	1 cut(s)	982
DraI	TTTAAA	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	185, 1078
Eam1104I	CTCTTC	3 cut(s)	172, 211, 510
EarI	CTCTTC	3 cut(s)	172, 211, 510
Eco130I	CCWWGG	2 cut(s)	553, 609
Eco31I	GGTCTC	1 cut(s)	979
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	678
Eco91I	GGTNACC	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	1033
EcoO65I	GGTNACC	1 cut(s)	740
EcoRI	GAATTC	1 cut(s)	696
EcoRII	CCWGG	3 cut(s)	187, 586, 816
EcoRV	GATATC	1 cut(s)	769
EcoT14I	CCWWGG	2 cut(s)	553, 609
ErhI	CCWWGG	2 cut(s)	553, 609
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	4 cut(s)	87, 124, 481, 634
FaiI	YATR	9 cut(s)	85, 122, 246, 305, 479, 632, 1052, 1110, 1195
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	4 cut(s)	83, 120, 477, 630
Fnu4HI	GCNGC	2 cut(s)	674, 1078
FokI	GGATG	3 cut(s)	14, 926, 1003
Fsp4HI	GCNGC	2 cut(s)	674, 1078
FspBI	CTAG	4 cut(s)	281, 554, 966, 986
GluI	GCNGC	2 cut(s)	674, 1078
GsuI	CTGGAG	3 cut(s)	42, 950, 1123
HaeIII	GGCC	4 cut(s)	187, 721, 1009, 1080
HapII	CCGG	2 cut(s)	717, 1063
HgaI	GACGC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	87, 124, 481, 634
HinfI	GANTC	3 cut(s)	7, 230, 299
HpaII	CCGG	2 cut(s)	717, 1063
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	6 cut(s)	75, 270, 298, 484, 644, 658
Hpy188III	TCNNGA	6 cut(s)	121, 493, 772, 789, 980, 1099
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	5 cut(s)	548, 653, 816, 885, 1177
HpyCH4III	ACNGT	4 cut(s)	294, 402, 500, 831
HpyCH4V	TGCA	5 cut(s)	87, 112, 201, 676, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	679
HpyF3I	CTNAG	4 cut(s)	323, 410, 641, 725
Hsp92II	CATG	4 cut(s)	87, 124, 481, 634
KpnI	GGTACC	1 cut(s)	939
Kzo9I	GATC	1 cut(s)	982
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	660
LweI	GCATC	1 cut(s)	835
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	4 cut(s)	281, 554, 966, 986
MaeIII	GTNAC	3 cut(s)	34, 740, 825
MalI	GATC	1 cut(s)	984
MbiI	CCGCTC	1 cut(s)	1077
MboI	GATC	1 cut(s)	982
MboII	GAAGA	6 cut(s)	159, 198, 204, 497, 626, 1016
MfeI	CAATTG	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	187
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	3 cut(s)	240, 276, 967
MnlI	CCTC	8 cut(s)	347, 370, 590, 629, 638, 755, 925, 1039
Mox20I	TGGCCA	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	922
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	4 cut(s)	255, 333, 353, 417
MslI	CAYNNNNRTG	2 cut(s)	476, 540
Msp20I	TGGCCA	1 cut(s)	187
MspI	CCGG	2 cut(s)	717, 1063
MspR9I	CCNGG	5 cut(s)	189, 588, 718, 818, 1063
MunI	CAATTG	1 cut(s)	172
MvaI	CCWGG	3 cut(s)	189, 588, 818
MwoI	GCNNNNNNNGC	1 cut(s)	679
NciI	CCSGG	2 cut(s)	718, 1063
NdeII	GATC	1 cut(s)	982
NlaIII	CATG	4 cut(s)	87, 124, 481, 634
NlaIV	GGNNCC	3 cut(s)	433, 937, 991
NspI	RCATGY	2 cut(s)	87, 481
OliI	CACNNNNGTG	1 cut(s)	540
PagI	TCATGA	1 cut(s)	120
PciI	ACATGT	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	779
PdmI	GAANNNNTTC	1 cut(s)	922
PfeI	GAWTC	2 cut(s)	7, 230
PflMI	CCANNNNNTGG	2 cut(s)	593, 817
PkrI	GCNGC	2 cut(s)	675, 1079
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PscI	ACATGT	1 cut(s)	477
PshAI	GACNNNNGTC	1 cut(s)	621
Psp6I	CCWGG	3 cut(s)	187, 586, 816
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	3 cut(s)	187, 586, 816
PspN4I	GGNNCC	3 cut(s)	433, 937, 991
PspPI	GGNCC	3 cut(s)	431, 719, 1007
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	502, 937
RsaNI	GTAC	2 cut(s)	501, 936
RseI	CAYNNNNRTG	2 cut(s)	476, 540
SaqAI	TTAA	4 cut(s)	255, 333, 353, 417
SatI	GCNGC	2 cut(s)	674, 1078
Sau3AI	GATC	1 cut(s)	982
Sau96I	GGNCC	3 cut(s)	431, 719, 1007
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	5 cut(s)	189, 588, 718, 818, 1063
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	2 cut(s)	244, 303
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	2 cut(s)	476, 540
SpeI	ACTAGT	2 cut(s)	280, 965
SsiI	CCGC	1 cut(s)	1077
SspI	AATATT	1 cut(s)	1175
SspMI	CTAG	4 cut(s)	281, 554, 966, 986
StyD4I	CCNGG	5 cut(s)	187, 586, 716, 816, 1061
StyI	CCWWGG	2 cut(s)	553, 609
TaaI	ACNGT	4 cut(s)	294, 402, 500, 831
TaqI	TCGA	1 cut(s)	773
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	1 cut(s)	1080
TfiI	GAWTC	2 cut(s)	7, 230
Tru1I	TTAA	4 cut(s)	255, 333, 353, 417
Tru9I	TTAA	4 cut(s)	255, 333, 353, 417
TscAI	CASTG	3 cut(s)	729, 933, 1189
TseI	GCWGC	1 cut(s)	673
TspDTI	ATGAA	7 cut(s)	109, 198, 363, 647, 651, 1097, 1148
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	3 cut(s)	729, 933, 1189
Van91I	CCANNNNNTGG	2 cut(s)	593, 817
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	1033
XapI	RAATTY	4 cut(s)	391, 696, 886, 1102
XceI	RCATGY	2 cut(s)	87, 481
XmaJI	CCTAGG	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	922
XspI	CTAG	4 cut(s)	281, 554, 966, 986
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.