Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Reverse (-)

28468508 .. 28477525

Gene Structure 9018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTGTCTTTGGTCGCAAGAGATAAGAGTGGCTGATGTTACAGTGGGAATATGTGTAATGCAGATCTGTGAAGGAAAAGTGACATCTATACATCTGTATCAAGGAGCATTTGTGGACATCGGAGGTGTGTATGATGGGTGGGTTCCTATAAAAAATAACGACTGGTACTGGATCCGCCATCACATAAAAGTTAGTATGCATGTCATGGTTGAAATTCTGCCAAAACGAGATCCTTATCGCTTTCGGTTTCCAATTGAATTGCGTTTTGTCTATCCGAATATAGACCACCTTATCTTTAACAGGTTTGACTTTCCACCAATATTTCATCATGATGAAGATACTAATCCAGACGAATTACGGTTGTGGCAGATACATGTTGCTGAACAGATGATTTTGGATGATGTGGAGGCTAATCCTGGGAAATATAAAGACAAAAAACTATCAGAGTTAACTGATGCTGAAGATTTGAATGAAGAAAATAGTATTGAATATTCAAAAGCTTATTATAAGAAAACCTTAGTACCAAAAGTGATTCTGAAAACAAGCGTTAAAGAACTTGACCTGGAGGCTGCCTTTGCTGAGCGTCAGCTACGTAACACACTAAGAAGGGAGACAGAAGAGAGAGGAGAGGAATACAAAGTTACCAAAATGAGGCGCAATGTTGAGATGGACGAGTATGACTTCTTACAATTGGCGTCGATCATTGGAGGAAAGAGAAGCTTTGATCAGAGATATAAGCTGGTACTGCAAGAAGTTCTATATGTTTTTGATGCTATCCGCAAGGCTCTTGGTCTACCACTGGAAGAGCCGGGGAGGTATGTGGAAGACAGCTATTTTGGAAAGGATCAATATGACCCGGACAACGCTCTATACCGGTATGACTACTGGGGAGAACCGAAAAACTCAGAGAAGAGCAAGCAAGAACGGCTGACAGATGCTCACAACAAAGCTATTGTTGGAAAGAGTACCGTGTGGTATGAAATGTCATATGACGATTGCATCAAACAGCGGATGCAAAGAGAAGCCAAGGGGATAAAACCAAGAGAATATGAGGAGGAAGATACAAACACAGGTGACGATGATGAAGACGACGACGACGACTTTGATTTCAGCTTCTTGAATGAAACTGTTGATATGACCTCCCAGCCCCATGTTAATGGGACAGAATCTCCTACAATTTCCGATGAGGGCATATTTGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

401

Amino Acids

47.31

Weight (kDa)

4.76

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
AccI	GTMKAC	1 cut(s)	793
AciI	CCGC	3 cut(s)	175, 778, 1009
AclWI	GGATC	4 cut(s)	166, 179, 224, 852
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	695
AfaI	GTAC	4 cut(s)	167, 522, 744, 967
AfiI	CCNNNNNNNGG	1 cut(s)	651
AflIII	ACRYGT	1 cut(s)	373
AgeI	ACCGGT	1 cut(s)	873
AgsI	TTSAA	6 cut(s)	212, 257, 469, 488, 495, 1120
AjnI	CCWGG	2 cut(s)	415, 561
AluBI	AGCT	7 cut(s)	500, 589, 720, 739, 831, 950, 1113
AluI	AGCT	7 cut(s)	500, 589, 720, 739, 831, 950, 1113
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	4 cut(s)	166, 179, 224, 852
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	213
ArsI	GACNNNNNNTTYG	4 cut(s)	818, 850, 1085, 1117
AsiGI	ACCGGT	1 cut(s)	873
AspLEI	GCGC	1 cut(s)	657
AsuC2I	CCSGG	2 cut(s)	810, 857
AsuHPI	GGTGA	1 cut(s)	1085
BaeI	ACNNNNGTAYC	4 cut(s)	80, 113, 504, 537
BamHI	GGATCC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	831, 1092
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	3 cut(s)	128, 186, 661
BceAI	ACGGC	1 cut(s)	941
BciT130I	CCWGG	2 cut(s)	417, 563
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	2 cut(s)	810, 857
BcoDI	GTCTC	1 cut(s)	605
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	4 cut(s)	417, 563, 810, 857
BmiI	GGNNCC	2 cut(s)	144, 173
BmrFI	CCNGG	4 cut(s)	417, 563, 810, 857
BmrI	ACTGGG	1 cut(s)	895
BmsI	GCATC	5 cut(s)	445, 760, 925, 1002, 1008
BmuI	ACTGGG	1 cut(s)	895
BpiI	GAAGAC	2 cut(s)	831, 1092
BpmI	CTGGAG	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuMI	CCSGG	2 cut(s)	810, 857
BsaAI	YACGTR	1 cut(s)	593
BsaBI	GATNNNNATC	2 cut(s)	234, 342
BsaHI	GRCGYC	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	416, 809, 1026
BsaWI	WCCGGW	1 cut(s)	873
BsaXI	ACNNNNNCTCC	4 cut(s)	96, 126, 1153, 1183
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse118I	RCCGGY	1 cut(s)	873
Bse1I	ACTGG	4 cut(s)	167, 173, 804, 890
Bse3DI	GCAATG	1 cut(s)	664
Bse8I	GATNNNNATC	2 cut(s)	234, 342
BseBI	CCWGG	2 cut(s)	417, 563
BseDI	CCNNGG	3 cut(s)	416, 809, 1026
BseGI	GGATG	2 cut(s)	403, 1017
BseJI	GATNNNNATC	2 cut(s)	234, 342
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	570, 918
BseNI	ACTGG	4 cut(s)	167, 173, 804, 890
BseRI	GAGGAG	2 cut(s)	639, 1067
BseXI	GCAGC	1 cut(s)	556
BseYI	CCCAGC	1 cut(s)	1143
BshTI	ACCGGT	1 cut(s)	873
BsiSI	CCGG	3 cut(s)	809, 857, 874
BslFI	GGGAC	1 cut(s)	1174
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	1174
Bsp143I	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
Bsp1720I	GCTNAGC	1 cut(s)	579
BspACI	CCGC	3 cut(s)	175, 778, 1009
BspCNI	CTCAG	2 cut(s)	571, 917
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	144, 173
BspPI	GGATC	4 cut(s)	166, 179, 224, 852
BspQI	GCTCTTC	2 cut(s)	798, 905
BsrDI	GCAATG	1 cut(s)	664
BsrFI	RCCGGY	1 cut(s)	873
BsrI	ACTGG	4 cut(s)	167, 173, 804, 890
BssAI	RCCGGY	1 cut(s)	873
BssECI	CCNNGG	3 cut(s)	416, 809, 1026
BssMI	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
BssNI	GRCGYC	1 cut(s)	695
BssT1I	CCWWGG	1 cut(s)	1026
Bst2UI	CCWGG	2 cut(s)	417, 563
Bst4CI	ACNGT	4 cut(s)	43, 360, 970, 1129
Bst6I	CTCTTC	3 cut(s)	612, 798, 905
BstACI	GRCGYC	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	917
BstDEI	CTNAG	4 cut(s)	517, 579, 602, 904
BstF5I	GGATG	2 cut(s)	403, 1017
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	6 cut(s)	66, 174, 232, 702, 727, 847
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
BstMWI	GCNNNNNNNGC	3 cut(s)	575, 745, 925
BstNI	CCWGG	2 cut(s)	417, 563
BstNSI	RCATGY	2 cut(s)	203, 377
BstSCI	CCNGG	4 cut(s)	415, 561, 808, 855
BstSNI	TACGTA	1 cut(s)	593
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	2 cut(s)	831, 1092
BstX2I	RGATCY	3 cut(s)	63, 171, 229
BstXI	CCANNNNNNTGG	1 cut(s)	1157
BstYI	RGATCY	3 cut(s)	63, 171, 229
BtsCI	GGATG	2 cut(s)	403, 1017
BtsIMutI	CAGTG	2 cut(s)	48, 797
Cac8I	GCNNGC	1 cut(s)	917
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	657
Cfr10I	RCCGGY	1 cut(s)	873
CseI	GACGC	2 cut(s)	572, 684
Csp6I	GTAC	4 cut(s)	166, 521, 743, 966
CspAI	ACCGGT	1 cut(s)	873
CviAII	CATG	5 cut(s)	200, 205, 329, 374, 1151
CviQI	GTAC	4 cut(s)	166, 521, 743, 966
DdeI	CTNAG	4 cut(s)	517, 579, 602, 904
DpnI	GATC	6 cut(s)	65, 173, 231, 701, 726, 846
DpnII	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
Eam1104I	CTCTTC	3 cut(s)	612, 798, 905
EarI	CTCTTC	3 cut(s)	612, 798, 905
EciI	GGCGGA	1 cut(s)	164
Eco105I	TACGTA	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	1026
Eco57I	CTGAAG	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	415, 561
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT22I	ATGCAT	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	1026
FaeI	CATG	5 cut(s)	203, 208, 332, 377, 1154
FalI	AAGNNNNNCTT	4 cut(s)	500, 532, 704, 736
FaqI	GGGAC	1 cut(s)	1174
FatI	CATG	5 cut(s)	199, 204, 328, 373, 1150
FauNDI	CATATG	1 cut(s)	988
FbaI	TGATCA	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	793
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	2 cut(s)	410, 1024
Fsp4HI	GCNGC	1 cut(s)	570
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	1 cut(s)	570
GsaI	CCCAGC	1 cut(s)	1147
GsuI	CTGGAG	1 cut(s)	584
HapII	CCGG	3 cut(s)	809, 857, 874
HgaI	GACGC	2 cut(s)	572, 684
HhaI	GCGC	1 cut(s)	657
Hin1I	GRCGYC	1 cut(s)	695
Hin1II	CATG	5 cut(s)	203, 208, 332, 377, 1154
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	2 cut(s)	498, 718
HinfI	GANTC	2 cut(s)	532, 1166
HpaI	GTTAAC	1 cut(s)	450
HpaII	CCGG	3 cut(s)	809, 857, 874
HphI	GGTGA	1 cut(s)	1085
Hpy166II	GTNNAC	3 cut(s)	115, 450, 794
Hpy188I	TCNGA	7 cut(s)	122, 276, 445, 537, 729, 907, 1183
Hpy188III	TCNNGA	3 cut(s)	329, 347, 1117
Hpy8I	GTNNAC	3 cut(s)	115, 450, 794
Hpy99I	CGWCG	4 cut(s)	700, 1094, 1097, 1100
HpyAV	CCTTC	2 cut(s)	65, 600
HpyCH4III	ACNGT	4 cut(s)	43, 360, 970, 1129
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	5 cut(s)	61, 199, 748, 999, 1015
HpyF10VI	GCNNNNNNNGC	3 cut(s)	575, 745, 925
HpyF3I	CTNAG	4 cut(s)	517, 579, 602, 904
HpySE526I	ACGT	1 cut(s)	592
Hsp92I	GRCGYC	1 cut(s)	695
Hsp92II	CATG	5 cut(s)	203, 208, 332, 377, 1154
HspAI	GCGC	1 cut(s)	655
Ksp22I	TGATCA	1 cut(s)	724
KspAI	GTTAAC	1 cut(s)	450
Kzo9I	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
LguI	GCTCTTC	2 cut(s)	798, 905
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	5 cut(s)	445, 760, 925, 1002, 1008
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	5 cut(s)	37, 79, 593, 640, 1073
MalI	GATC	6 cut(s)	65, 173, 231, 701, 726, 846
MboI	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
MboII	GAAGA	9 cut(s)	347, 473, 485, 629, 815, 836, 922, 1070, 1097
MfeI	CAATTG	2 cut(s)	252, 689
MflI	RGATCY	3 cut(s)	63, 171, 229
MluCI	AATT	6 cut(s)	213, 252, 257, 353, 689, 1176
MmeI	TCCRAC	1 cut(s)	937
Mph1103I	ATGCAT	1 cut(s)	201
MseI	TTAA	5 cut(s)	297, 449, 549, 1155, 1204
MslI	CAYNNNNRTG	2 cut(s)	330, 1155
MspA1I	CMGCKG	1 cut(s)	1009
MspI	CCGG	3 cut(s)	809, 857, 874
MspR9I	CCNGG	4 cut(s)	417, 563, 810, 857
MunI	CAATTG	2 cut(s)	252, 689
MvaI	CCWGG	2 cut(s)	417, 563
MwoI	GCNNNNNNNGC	3 cut(s)	575, 745, 925
NciI	CCSGG	2 cut(s)	810, 857
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
NlaIII	CATG	5 cut(s)	203, 208, 332, 377, 1154
NlaIV	GGNNCC	2 cut(s)	144, 173
NmuCI	GTSAC	2 cut(s)	79, 1073
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	2 cut(s)	203, 377
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	1 cut(s)	373
PciSI	GCTCTTC	2 cut(s)	798, 905
PcsI	WCGNNNNNNNCGW	1 cut(s)	1095
PfeI	GAWTC	2 cut(s)	532, 1166
PinAI	ACCGGT	1 cut(s)	873
PkrI	GCNGC	1 cut(s)	571
Ppu21I	YACGTR	1 cut(s)	593
PscI	ACATGT	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	415, 561
PspFI	CCCAGC	1 cut(s)	1143
PspGI	CCWGG	2 cut(s)	415, 561
PspN4I	GGNNCC	2 cut(s)	144, 173
PsuI	RGATCY	3 cut(s)	63, 171, 229
RsaI	GTAC	4 cut(s)	167, 522, 744, 967
RsaNI	GTAC	4 cut(s)	166, 521, 743, 966
RseI	CAYNNNNRTG	2 cut(s)	330, 1155
SapI	GCTCTTC	2 cut(s)	798, 905
SaqAI	TTAA	5 cut(s)	297, 449, 549, 1155, 1204
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	6 cut(s)	63, 171, 229, 699, 724, 844
ScrFI	CCNGG	4 cut(s)	417, 563, 810, 857
SfaNI	GCATC	5 cut(s)	445, 760, 925, 1002, 1008
SmiMI	CAYNNNNRTG	2 cut(s)	330, 1155
SnaBI	TACGTA	1 cut(s)	593
Sse9I	AATT	6 cut(s)	213, 252, 257, 353, 689, 1176
SsiI	CCGC	3 cut(s)	175, 778, 1009
SspI	AATATT	2 cut(s)	321, 491
StyD4I	CCNGG	4 cut(s)	415, 561, 808, 855
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	4 cut(s)	43, 360, 970, 1129
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	1 cut(s)	698
TasI	AATT	6 cut(s)	213, 252, 257, 353, 689, 1176
TfiI	GAWTC	2 cut(s)	532, 1166
Tru1I	TTAA	5 cut(s)	297, 449, 549, 1155, 1204
Tru9I	TTAA	5 cut(s)	297, 449, 549, 1155, 1204
TscAI	CASTG	2 cut(s)	48, 804
TseFI	GTSAC	2 cut(s)	79, 1073
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	79, 1073
TspDTI	ATGAA	6 cut(s)	314, 348, 486, 993, 1098, 1137
TspRI	CASTG	2 cut(s)	48, 804
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	2 cut(s)	203, 377
XmiI	GTMKAC	1 cut(s)	793
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.