FvH4_4g36420

Phytosulfokine receptor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
33376893 .. 33381659
4767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36420.t2

Sequence Viewer

Length: 2019 bp
ATGGCAGGTTTGTCAACAAAAGTAGGTGGATGGGGAAATGATTTCTCTTCCGATTGCTGTAAATGGCCAGGTATCACTTGCAACTCTTCATCTTCTCTTGGATTGAATGATTCTATTGATACCTATAGAGTGGTTAAGTTGGAGCTTCCAAGTAAAAGAATATATGGCAAACTCTCTGAATCATTAGGCAATTTGGAACAGCTAAGGACACTTAACCTATCCCACAATTTCTTCAAAGCCTCACTTCCTATTTCAGTGTTCCATTTGCCAAATTTAGAACTGTTGGACCTGAGCTTTAATGACATTTCTGGTCCCATTCCAGTTGCTATCGATTTACCTTCAATCCAGTCCATTGACATTTCTGAAAACATCTTGAACGGTACTCTTCTAGCAAGTATCTGTGTCAATTCTGATCACCTACGCATACTGAACTTAGGTGTGAACTACTTGTCTGGCAGCCTCCCACCAGGTCTTGGGAGTTGTAAGTCCTTGCAAGACCTACGTCTTGACATGAATGATCTCATTGGTGGGATATCTGAAGGTTTAGTTAGGCTGCAGACGCTAACTCAATTAAGAATTCAAGGTAACAAGCTTTCTGGGCCTTTAAGCAAAGTAGTTGGTAACCTCAGTAACCTCATTTATTTGGATATCTCCAGTAATTGGTTTTCAGGAACTATCCCAGATGTTTTTGACAGCCTTGGAAGGTTACAGTTTTTTATTGCTCATTCAAATAATTTTAGTGGTCAGATACCACCTTCACTGTCCAATTCCCCAGTTATTTCTTTGCTTAATGTGAGAAACAATTCACTGGAGGGTACCATTCATCTGAACTGTTCAGCAATGACTAGTTTGATCTCTCTCGATCTAGGTTCTAATCGGTTTGATGGGCCTATTCCTTCCAACCTTCCCTCTTGTAGGCATTTGAATAATGTAAACTTTGCCCGGAACAATTTGAGTGGCCAAATTCCAGAAAGTTTCCAGAATTTTCATACTCTCTCTTACCTCTCGGTTTCAAACTCCAGCATTTCTAATCTTTCAGCTACCCTTCACATATTACAGCAGTGTCAAAACTTAACTGCTCTGGTTATGACAATGAATTTCCTTGATGAAGAATTTCCAGCTGATCCTACCCTTCATTTTGAAAAGTTGAAGGTTCTTGTTCTTGCAAATTGTAGGCTCAGGGGTTCAATACCCCAATGGTTGAGTAGTAGTAGCAATCTGCAGTTGCTGGATATTTCTTGGAACAACTTAGAAGGAACAATCCCAGTCTGGTTTGGTGATTTTAATCATCTCTTCTACTTGGACATATCAAACAATTCTCTCGCTGGGGACATTCCTAGAAGCATAACTGCACTAGAGAGCCTCATTGATGGGAAAATCTCAGTAGAAGAACCATACCCTGACTTTCCCCTTTTCATGAAAAGGAAGGCAAGTGCAAGAGGATTAGCATTACAGTATAATCAAGTTTATAGCTTCCCACCAACATTGGAATTTGGCAACAATAATCTTAGCGGACCAATCTGGGCAGAGTTTGGGAACCTGAAATCACTTCATGTTTTGGACCTTGGATTCAATAGTCTATCGGGACCAATTCCAAGTACTCTATCTAACATGACAAGCTTAGAGACGCTGGATCTGTCTCATAACAAGCTCTCCGGGACAATACCACCTTCATTGGTTCAGCTCAGCTTTTTGTCGAAGTTTAGTGTTGCAGACAACCAGTTAGAGGGTGCAATCCCTACAGGAGGTCAGTTCATGACCTTCCCGAATTCAAGCTTTCAAGGGAACAATCTCTGTGGCTTCCATGCTCTCTCTTGTCCATTAGACAACAATCCAGAAGAAGTGGATAGTGGACCTACTGGAAAATCATCAAGAGTAGAATTAGAACTTGATGGGGTTTATGTAGGAATAGCTGTAGGATTTGTATTTGGAATCATCTGTTTCATTGGAACAGATAAATATAGCTGGGTTATGCATGAAGAAGAAGTTGATGCTGCAAGTCATCGTAGGGCCATCTAA

Protein Analysis

673

Amino Acids

73.22

Weight (kDa)

5.14

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 3.4e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 86 - 142 3.2e-06 Leucine rich repeat
LRR_8 PF13855 422 - 481 5.6e-09 Leucine rich repeat
LRR_8 PF13855 556 - 615 8.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 815
AccB7I CCANNNNNTGG 2 cut(s) 473, 660
AciI CCGC 1 cut(s) 1512
AclWI GGATC 2 cut(s) 1118, 1641
AcoI YGGCCR 2 cut(s) 65, 958
AcsI RAATTY 8 cut(s) 271, 576, 963, 982, 1096, 1112, 1490, 1768
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 3 cut(s) 382, 817, 1600
AfiI CCNNNNNNNGG 5 cut(s) 473, 660, 915, 1726, 1745
AhlI ACTAGT 1 cut(s) 845
AjnI CCWGG 2 cut(s) 67, 466
Alw26I GTCTC 2 cut(s) 1619, 1644
AlwI GGATC 2 cut(s) 1118, 1641
AlwNI CAGNNNCTG 1 cut(s) 1228
AoxI GGCC 5 cut(s) 65, 599, 887, 958, 2010
ApeKI GCWGC 3 cut(s) 456, 553, 1994
ApoI RAATTY 8 cut(s) 271, 576, 963, 982, 1096, 1112, 1490, 1768
Asp700I GAANNNNTTC 2 cut(s) 802, 1113
Asp718I GGTACC 1 cut(s) 815
AspS9I GGNCC 9 cut(s) 286, 311, 599, 887, 1514, 1561, 1586, 1853, 2010
AsuC2I CCSGG 2 cut(s) 943, 1657
AsuHPI GGTGA 2 cut(s) 407, 1289
AvaII GGWCC 6 cut(s) 286, 311, 1514, 1561, 1586, 1853
BalI TGGCCA 2 cut(s) 67, 960
BanI GGYRCC 1 cut(s) 815
BbvI GCAGC 3 cut(s) 468, 540, 1981
BccI CCATC 4 cut(s) 24, 878, 1364, 1886
BciT130I CCWGG 2 cut(s) 69, 468
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 2 cut(s) 943, 1657
BcoDI GTCTC 2 cut(s) 1619, 1644
BcuI ACTAGT 1 cut(s) 845
BfaI CTAG 5 cut(s) 389, 846, 866, 1338, 1355
BfmI CTRYAG 5 cut(s) 124, 554, 1220, 1740, 1914
BisI GCNGC 3 cut(s) 457, 554, 1995
BlpI GCTNAGC 1 cut(s) 1685
BlsI GCNGC 3 cut(s) 458, 555, 1996
BmcAI AGTACT 1 cut(s) 1600
Bme1390I CCNGG 4 cut(s) 69, 468, 943, 1657
Bme18I GGWCC 6 cut(s) 286, 311, 1514, 1561, 1586, 1853
BmgT120I GGNCC 9 cut(s) 286, 311, 599, 887, 1514, 1561, 1586, 1853, 2010
BmiI GGNNCC 4 cut(s) 313, 817, 1538, 1587
BmrFI CCNGG 4 cut(s) 69, 468, 943, 1657
BmrI ACTGGG 2 cut(s) 767, 1259
BmsI GCATC 1 cut(s) 1981
BmuI ACTGGG 2 cut(s) 767, 1259
BoxI GACNNNNGTC 1 cut(s) 501
BpmI CTGGAG 3 cut(s) 637, 830, 1003
Bpu10I CCTNAGC 3 cut(s) 203, 290, 1178
Bpu1102I GCTNAGC 1 cut(s) 1685
BpuMI CCSGG 2 cut(s) 943, 1657
Bsa29I ATCGAT 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 1284
BsaJI CCNNGG 2 cut(s) 697, 1564
BsaXI ACNNNNNCTCC 2 cut(s) 1637, 1667
Bsc4I CCNNNNNNNGG 5 cut(s) 473, 660, 915, 1726, 1745
Bse1I ACTGG 8 cut(s) 320, 346, 654, 773, 813, 1265, 1720, 1864
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 1284
BseBI CCWGG 2 cut(s) 69, 468
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 697, 1564
BseGI GGATG 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 1284
BseLI CCNNNNNNNGG 5 cut(s) 473, 660, 915, 1726, 1745
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 5 cut(s) 281, 640, 1192, 1395, 1699
BseNI ACTGG 8 cut(s) 320, 346, 654, 773, 813, 1265, 1720, 1864
BseXI GCAGC 3 cut(s) 468, 540, 1981
BseYI CCCAGC 2 cut(s) 1325, 1965
BsgI GTGCAG 1 cut(s) 1335
BshFI GGCC 5 cut(s) 67, 601, 889, 960, 2012
BshNI GGYRCC 1 cut(s) 815
BshVI ATCGAT 1 cut(s) 330
BsiSI CCGG 2 cut(s) 943, 1656
BslFI GGGAC 4 cut(s) 297, 1343, 1599, 1672
BslI CCNNNNNNNGG 5 cut(s) 473, 660, 915, 1726, 1745
BsmAI GTCTC 2 cut(s) 1619, 1644
BsmBI CGTCTC 1 cut(s) 1619
BsmFI GGGAC 4 cut(s) 297, 1343, 1599, 1672
BsnI GGCC 5 cut(s) 67, 601, 889, 960, 2012
Bsp143I GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
Bsp1720I GCTNAGC 1 cut(s) 1685
BspACI CCGC 1 cut(s) 1512
BspANI GGCC 5 cut(s) 67, 601, 889, 960, 2012
BspCNI CTCAG 5 cut(s) 282, 639, 1191, 1394, 1698
BspDI ATCGAT 1 cut(s) 330
BspHI TCATGA 2 cut(s) 1416, 1755
BspLI GGNNCC 4 cut(s) 313, 817, 1538, 1587
BspMAI CTGCAG 2 cut(s) 558, 1224
BspPI GGATC 2 cut(s) 1118, 1641
BspT107I GGYRCC 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 846
BsrI ACTGG 8 cut(s) 320, 346, 654, 773, 813, 1265, 1720, 1864
BssECI CCNNGG 2 cut(s) 697, 1564
BssMI GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
BssT1I CCWWGG 2 cut(s) 697, 1564
Bst2UI CCWGG 2 cut(s) 69, 468
Bst4CI ACNGT 6 cut(s) 282, 380, 711, 762, 833, 1455
Bst6I CTCTTC 4 cut(s) 52, 91, 390, 1298
BstEII GGTNACC 1 cut(s) 620
BstENI CCTNNNNNAGG 2 cut(s) 913, 1743
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 6 cut(s) 415, 520, 855, 865, 1126, 1636
BstMAI GTCTC 2 cut(s) 1619, 1644
BstMBI GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
BstMWI GCNNNNNNNGC 2 cut(s) 559, 598
BstNI CCWGG 2 cut(s) 69, 468
BstPAI GACNNNNGTC 1 cut(s) 501
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 4 cut(s) 67, 466, 941, 1655
BstSFI CTRYAG 5 cut(s) 124, 554, 1220, 1740, 1914
BstV1I GCAGC 3 cut(s) 468, 540, 1981
BstX2I RGATCY 1 cut(s) 1633
BstYI RGATCY 1 cut(s) 1633
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 5 cut(s) 67, 601, 889, 960, 2012
BsuTUI ATCGAT 1 cut(s) 330
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 1067
BtsIMutI CAGTG 4 cut(s) 261, 758, 806, 1067
CaiI CAGNNNCTG 1 cut(s) 1228
CciI TCATGA 2 cut(s) 1416, 1755
Cfr13I GGNCC 9 cut(s) 286, 311, 599, 887, 1514, 1561, 1586, 1853, 2010
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 2 cut(s) 568, 1636
CsiI ACCWGGT 1 cut(s) 466
Csp6I GTAC 3 cut(s) 381, 816, 1599
CspCI CAANNNNNGTGG 8 cut(s) 937, 972, 1467, 1502, 1656, 1691, 1777, 1812
CviAII CATG 7 cut(s) 511, 1417, 1553, 1612, 1756, 1805, 1976
CviQI GTAC 3 cut(s) 381, 816, 1599
DpnI GATC 6 cut(s) 414, 519, 854, 864, 1125, 1635
DpnII GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
EaeI YGGCCR 2 cut(s) 65, 958
Eam1104I CTCTTC 4 cut(s) 52, 91, 390, 1298
EarI CTCTTC 4 cut(s) 52, 91, 390, 1298
Eco130I CCWWGG 2 cut(s) 697, 1564
Eco32I GATATC 2 cut(s) 534, 649
Eco47I GGWCC 6 cut(s) 286, 311, 1514, 1561, 1586, 1853
Eco57I CTGAAG 1 cut(s) 558
Eco91I GGTNACC 1 cut(s) 620
EcoNI CCTNNNNNAGG 2 cut(s) 913, 1743
EcoO65I GGTNACC 1 cut(s) 620
EcoRI GAATTC 2 cut(s) 576, 1768
EcoRII CCWGG 2 cut(s) 67, 466
EcoRV GATATC 2 cut(s) 534, 649
EcoT14I CCWWGG 2 cut(s) 697, 1564
EcoT22I ATGCAT 1 cut(s) 1977
ErhI CCWWGG 2 cut(s) 697, 1564
Esp3I CGTCTC 1 cut(s) 1619
FaeI CATG 7 cut(s) 514, 1420, 1556, 1615, 1759, 1808, 1979
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 4 cut(s) 297, 1343, 1599, 1672
FatI CATG 7 cut(s) 510, 1416, 1552, 1611, 1755, 1804, 1975
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 457, 554, 1995
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 3 cut(s) 457, 554, 1995
FspBI CTAG 5 cut(s) 389, 846, 866, 1338, 1355
GluI GCNGC 3 cut(s) 457, 554, 1995
GsaI CCCAGC 2 cut(s) 1329, 1969
GsuI CTGGAG 3 cut(s) 637, 830, 1003
HaeIII GGCC 5 cut(s) 67, 601, 889, 960, 2012
HapII CCGG 2 cut(s) 943, 1656
HgaI GACGC 2 cut(s) 568, 1636
Hin1II CATG 7 cut(s) 514, 1420, 1556, 1615, 1759, 1808, 1979
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HindIII AAGCTT 3 cut(s) 590, 1618, 1774
HinfI GANTC 4 cut(s) 110, 179, 1569, 1932
HpaII CCGG 2 cut(s) 943, 1656
HphI GGTGA 2 cut(s) 407, 1289
Hpy166II GTNNAC 4 cut(s) 15, 442, 934, 1853
Hpy188I TCNGA 7 cut(s) 52, 178, 364, 412, 538, 747, 828
Hpy8I GTNNAC 4 cut(s) 15, 442, 934, 1853
HpyCH4III ACNGT 6 cut(s) 282, 380, 711, 762, 833, 1455
HpyCH4IV ACGT 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 559, 598
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 7 cut(s) 514, 1420, 1556, 1615, 1759, 1808, 1979
KpnI GGTACC 1 cut(s) 819
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 3 cut(s) 468, 540, 1981
LweI GCATC 1 cut(s) 1981
MabI ACCWGGT 1 cut(s) 466
MaeI CTAG 5 cut(s) 389, 846, 866, 1338, 1355
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 4 cut(s) 584, 620, 629, 705
MalI GATC 6 cut(s) 414, 519, 854, 864, 1125, 1635
MboI GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
MflI RGATCY 1 cut(s) 1633
MlsI TGGCCA 2 cut(s) 67, 960
MluNI TGGCCA 2 cut(s) 67, 960
MmeI TCCRAC 3 cut(s) 120, 264, 924
Mox20I TGGCCA 2 cut(s) 67, 960
Mph1103I ATGCAT 1 cut(s) 1977
MroXI GAANNNNTTC 2 cut(s) 802, 1113
MscI TGGCCA 2 cut(s) 67, 960
MseI TTAA 8 cut(s) 135, 213, 297, 572, 605, 789, 1073, 1284
Msp20I TGGCCA 2 cut(s) 67, 960
MspA1I CMGCKG 1 cut(s) 1121
MspI CCGG 2 cut(s) 943, 1656
MspR9I CCNGG 4 cut(s) 69, 468, 943, 1657
MvaI CCWGG 2 cut(s) 69, 468
MwoI GCNNNNNNNGC 2 cut(s) 559, 598
NciI CCSGG 2 cut(s) 943, 1657
NdeII GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
NlaIII CATG 7 cut(s) 514, 1420, 1556, 1615, 1759, 1808, 1979
NlaIV GGNNCC 4 cut(s) 313, 817, 1538, 1587
NsiI ATGCAT 1 cut(s) 1977
PagI TCATGA 2 cut(s) 1416, 1755
PdmI GAANNNNTTC 2 cut(s) 802, 1113
PfeI GAWTC 4 cut(s) 110, 179, 1569, 1932
PflMI CCANNNNNTGG 2 cut(s) 473, 660
PfoI TCCNGGA 1 cut(s) 1655
PkrI GCNGC 3 cut(s) 458, 555, 1996
PshAI GACNNNNGTC 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 67, 466
PspEI GGTNACC 1 cut(s) 620
PspFI CCCAGC 2 cut(s) 1325, 1965
PspGI CCWGG 2 cut(s) 67, 466
PspN4I GGNNCC 4 cut(s) 313, 817, 1538, 1587
PspPI GGNCC 9 cut(s) 286, 311, 599, 887, 1514, 1561, 1586, 1853, 2010
PstI CTGCAG 2 cut(s) 558, 1224
PstNI CAGNNNCTG 1 cut(s) 1228
PsuI RGATCY 1 cut(s) 1633
PvuII CAGCTG 1 cut(s) 1121
RsaI GTAC 3 cut(s) 382, 817, 1600
RsaNI GTAC 3 cut(s) 381, 816, 1599
SaqAI TTAA 8 cut(s) 135, 213, 297, 572, 605, 789, 1073, 1284
SatI GCNGC 3 cut(s) 457, 554, 1995
Sau3AI GATC 6 cut(s) 412, 517, 852, 862, 1123, 1633
Sau96I GGNCC 9 cut(s) 286, 311, 599, 887, 1514, 1561, 1586, 1853, 2010
ScaI AGTACT 1 cut(s) 1600
ScrFI CCNGG 4 cut(s) 69, 468, 943, 1657
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 1 cut(s) 1981
SfcI CTRYAG 5 cut(s) 124, 554, 1220, 1740, 1914
SinI GGWCC 6 cut(s) 286, 311, 1514, 1561, 1586, 1853
SpeI ACTAGT 1 cut(s) 845
SsiI CCGC 1 cut(s) 1512
SspMI CTAG 5 cut(s) 389, 846, 866, 1338, 1355
StyD4I CCNGG 4 cut(s) 67, 466, 941, 1655
StyI CCWWGG 2 cut(s) 697, 1564
TaaI ACNGT 6 cut(s) 282, 380, 711, 762, 833, 1455
TaiI ACGT 1 cut(s) 505
TaqI TCGA 3 cut(s) 330, 861, 1697
TatI WGTACW 1 cut(s) 1598
TfiI GAWTC 4 cut(s) 110, 179, 1569, 1932
Tru1I TTAA 8 cut(s) 135, 213, 297, 572, 605, 789, 1073, 1284
Tru9I TTAA 8 cut(s) 135, 213, 297, 572, 605, 789, 1073, 1284
TscAI CASTG 4 cut(s) 261, 765, 813, 1067
TseI GCWGC 3 cut(s) 456, 553, 1994
TspRI CASTG 4 cut(s) 261, 765, 813, 1067
Van91I CCANNNNNTGG 2 cut(s) 473, 660
VpaK11BI GGWCC 6 cut(s) 286, 311, 1514, 1561, 1586, 1853
XagI CCTNNNNNAGG 2 cut(s) 913, 1743
XapI RAATTY 8 cut(s) 271, 576, 963, 982, 1096, 1112, 1490, 1768
XmnI GAANNNNTTC 2 cut(s) 802, 1113
XspI CTAG 5 cut(s) 389, 846, 866, 1338, 1355
ZrmI AGTACT 1 cut(s) 1600
Zsp2I ATGCAT 1 cut(s) 1977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.