Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Forward (+)

577743 .. 581209

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1007600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3066 bp

ATGGGGGTCCAAGATTTCTGGGTTTTCATTTTTGTTATTGGGTTTTGCTTCCAAGCTCGGATTTTAAGCTCTCAAAACCTGACATGCAATCCCAACGATTTGAAAGCATTGGAGGATTTCAGGAACGGTATAGATTCTGTGATTGATGGGTGGGGCAGCAAATTTTCACCTGATTGCTGTAAATGGGCAGGCATCACTTGCAATTCTTCGTCCTCTCTCGGATTGAACTATTCCATTGATACTTATAGAGTGGTAAAACTGGAGCTTCCAAAGAGAAGGCTACTGGGGAATCTCTCTGCATCTTTAGGGACCTTGGACCAGCTCAGAACCCTCAATCTCTCTCACAATTTCCTCAAGCACTTGCTTCCCTTTTCGCTCTTCCATTTGCCAAATTTAAAGCTCTTAGACTTGAGTTCTAATGACTTTTCCGGCCCCATTCCTGTCGATATCGATTTGCCTTCAGTCCAGTTCATTGAAATTTCTTATAACTTTTTGAATGGTTCCCTTCCAGCTAGCATCTGTGACAGTTCTACTCAGCTTCGAACTCTGAAGTTGGCTGTGAACTACTTCTCTGGTAACCTCCCACCAGGTCTTGGCAATTGTATTTCCTTGGAGCACCTCTGTCTAGCCATGAATAATTTCAATGGCAGTGTACCCGAAGGTATATTTCGTCTGCGAAAGCTAACCCAGTTGAACATTCAAGATAACAAGTTGTCAGGGGCCCTCAGCGAAGAATTCGGTAATCTCAGTAACCTTGTTCGTTTGGATATCTCAACTAATGGGTTTTCAGGAACTATCCCAGATGTTTTCCACAGCCTTGGAAGATTACAGAATTTTGTGGCTCATTCAAATCGTTTTGGTGGTCGGATACCCCCTTCTTTGTCGAGTTCATCGACTATCACTTTGCTTAATTTGAAAAACAATTCATTGCAGGGCACAATTGATCTTGATTGTTCAGCAATGACTAGTTTGACCTCTCTTGATCTCGGTTCCAATCGGTTTGATGGGCCTATTCCCTCCAATCTTCCCTCCTGTCAACATTTGAATACTGTCAATCTTGCCCGTAACAACTTCACTGGTGAAATCCCAGAAAGCTTCAAGAGTTTCCATAGCCTCTCTTACATCTCGCTGTCAAATTGCAGCCTTTCCAATATCTCTTCTGCCCTTCAAATTTTACAGCAGTGTCAGAACCTGACTACTTTGGTTCTCACCTTGAACTTCCGCAGCGAACAATTTCCTGCTGATCCAACCCTTCATTTTGAAAAGTTGAAGGTTCTTGTTATTGCAAACTGTAGGCTCACAGGTGTAATACCCCAATGGTTGAGTACTAGCAGCAGATTGCAGTTGTTGGATATATCATGGAACCAATTGGAAGGAACAATTCCAGTCTGGTTTGGTAATTTTAGCAGTCTTTTCTACTTGGACATGTCTAATAATTCCTTAACGGGGGAAATCCCGAGAAGCTTAACTGGACTCCCGAGCCTCATTAATGGGAGGATCTTCATTGAGGAACCTTCACCTGATTTCCCTCTTTTCATGAAGAAGAATGTAAGTGCACGAGGGTTGCAGTACAATCAAGTTGGGAGCTTTCCACCAACGCTGGAACTTAGTAACAATAATCTTAGCGGACCAATCTGGCCAGAGTTTGGGAAACTGAAATCGCTTCATGTTTTGGATCTGAAGTGCAACAATCTATCAGGACCGATTCCGAGTAATTTATCTGGGATGGCAAGCTTAGAGACTCTGGATTTGTCTCATAACATGCTTTCAGGGAACATACCGCCTTCGTTGGTCAAACTCAACTTCTTGTCCAAGTTTAATGCTGCAGACAATCAGTTATACGGGGTGATCCCTACAGGAGGTCAGTTTTGGACCTTCCCAAATTCAAGCTTTGAAGGGAACAATCTTTGTGGCGACCATGCGCCCCCATGTCCATCAAATGTGCATTATCCCCCTGGGAAGCCCAGCAAAACAAGGAAAAATAGAGGAGTTGTTATTGGTATTGCTGTCGGAATTGCATTTGGAACAGCATTTGTTCTTGCTCTCATGTTCATAATTGTGGTGCGGGCACATAGCCGGAGAGAGGTTGATCCTGAAAGAGAGGACCACGATACCAACGGGAAGGATTTGGAAGAACTCGGGTCAAAACTAGTGGTTCTGTTCCAAAACAAGGATGCTAATAAAGAGCTCTCTCTTGATGACCTTCTACAATCTACCAACAATTTTGACCAAGCAAATATCGTCGGTTGCGGGGGTTTTGGTCTGGTTTACAAGGCCAGCCTTCCTGATGGTAAGAAGGTTGCTATCAAGCGGCTTTCTGGTGACTGTGGCCAGATGGACAGAGAATTCTGCGCTGAAGTTGAAACCTTGTCAAGAGCTCAACATCCAAATCTTGTACCTCTTCAGGGTTATTGCACGTATAAAAGTGACAGGCTCTTGATATATTCTTACATGGAGAACGGTAGTCTGGATTACTGGTTACATGAGAAAATCGACGGTCCAACCTCTCTAGATTGGAATGTGAGGCTTAAGATTGCTCAAGGGGCAGCGAGAGGGCTTGCTTATTTGCACCAGTCATGCGAGCCCCACATCCTTCATCGGGATATAAAGTCAAGCAACATCCTTTTGGATGAGAATTTTAAAGCGCACTTGGCGGATTTTGGTCTTGCAAGGCTCATACACCCGTATGCTACTCATGTAACAACTGATCTTGTTGGGACATTAGGCTACATCCCTCCTGAGTACAGCCAAGCCTCTGTCGCTACTTACAAGGGCGATGTGTACAGTTTCGGGGTTGTTCTTTTGGAGCTGCTCACCGGAAAAAGGCCGATGGATATGTGCAAACCAAAAGAATGTCGGGATTTGATCTCGTGGGCATTTCAGATGAAGAGGGAAAAGAAGGAAAGCGAGGTGTTTGATCCATTCATTTGTGACAAGCAGCACGATGAGGAACTGTTGTGTGTTTTTGAGATTGCATGCCTTTGCTTAAGCGGAAGCCCGAAGGTGAGGCCTTCAACTCAGCAGCTAGTTACTTGGCTCGACAACATTAACACCAAGAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

1022

Amino Acids

112.94

Weight (kDa)

6.33

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 68	1.8e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	87 - 142	5.2e-06	Leucine rich repeat
LRR_14	PF23598	100 - 329	5.5e-10	Leucine-rich repeat region
LRR_8	PF13855	323 - 382	3.8e-06	Leucine rich repeat
LRR_8	PF13855	533 - 589	3.2e-07	Leucine rich repeat
Pkinase	PF00069	744 - 1010	2.9e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	746 - 969	1.6e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AccB7I	CCANNNNNTGG	2 cut(s)	593, 1646
AciI	CCGC	8 cut(s)	1222, 1626, 1781, 2065, 2250, 2311, 2654, 2991
AclWI	GGATC	6 cut(s)	1238, 1505, 1683, 1843, 2084, 2912
AcoI	YGGCCR	2 cut(s)	1637, 2329
AcsI	RAATTY	9 cut(s)	161, 391, 477, 734, 832, 1170, 1882, 2345, 2635
AcuI	CTGAAG	5 cut(s)	444, 569, 1700, 2376, 2387
AfaI	GTAC	6 cut(s)	654, 1327, 1571, 2397, 2744, 2783
AfiI	CCNNNNNNNGG	9 cut(s)	593, 1446, 1646, 1859, 2083, 2170, 2405, 2599, 2823
AflII	CTTAAG	2 cut(s)	2528, 2986
AflIII	ACRYGT	1 cut(s)	1425
AhlI	ACTAGT	2 cut(s)	965, 2149
AjnI	CCWGG	2 cut(s)	586, 1954
Alw21I	GWGCWC	4 cut(s)	618, 1558, 2190, 2380
Alw26I	GTCTC	2 cut(s)	1733, 1758
Alw44I	GTGCAC	1 cut(s)	1554
AlwI	GGATC	6 cut(s)	1238, 1505, 1683, 1843, 2084, 2912
AlwNI	CAGNNNCTG	1 cut(s)	1192
Ama87I	CYCGRG	3 cut(s)	1456, 1477, 2138
AoxI	GGCC	8 cut(s)	430, 720, 1007, 1637, 2274, 2329, 2825, 3008
ApaI	GGGCCC	1 cut(s)	724
ApaLI	GTGCAC	1 cut(s)	1554
ApeKI	GCWGC	9 cut(s)	156, 1140, 1224, 1332, 1823, 2546, 2809, 2938, 3022
ApoI	RAATTY	9 cut(s)	161, 391, 477, 734, 832, 1170, 1882, 2345, 2635
ArsI	GACNNNNNNTTYG	4 cut(s)	886, 918, 1732, 1764
AseI	ATTAAT	1 cut(s)	1488
Asp700I	GAANNNNTTC	3 cut(s)	566, 638, 1233
AspLEI	GCGC	3 cut(s)	1924, 2354, 2647
AsuHPI	GGTGA	8 cut(s)	159, 1091, 1201, 1509, 1858, 2333, 2806, 3016
AsuII	TTCGAA	1 cut(s)	541
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	3 cut(s)	1456, 1477, 2138
AvaII	GGWCC	8 cut(s)	7, 309, 316, 1628, 1700, 1872, 2104, 2498
BaeGI	GKGCMC	4 cut(s)	724, 938, 1558, 2071
BalI	TGGCCA	2 cut(s)	1639, 2331
BanII	GRGCYC	4 cut(s)	724, 2190, 2380, 2586
BauI	CACGAG	2 cut(s)	1557, 2869
Bbv12I	GWGCWC	4 cut(s)	618, 1558, 2190, 2380
BbvCI	CCTCAGC	1 cut(s)	725
BbvI	GCAGC	9 cut(s)	168, 1152, 1236, 1344, 1810, 2558, 2796, 2950, 3034
BccI	CCATC	7 cut(s)	140, 998, 1720, 1942, 2282, 2329, 2824
BciT130I	CCWGG	2 cut(s)	588, 1956
BciVI	GTATCC	1 cut(s)	861
BcoDI	GTCTC	2 cut(s)	1733, 1758
BcuI	ACTAGT	2 cut(s)	965, 2149
BfaI	CTAG	7 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026
BfmI	CTRYAG	3 cut(s)	1291, 1824, 1854
BfrI	CTTAAG	2 cut(s)	2528, 2986
BfuI	GTATCC	1 cut(s)	861
BmcAI	AGTACT	1 cut(s)	1327
Bme1390I	CCNGG	2 cut(s)	588, 1956
Bme18I	GGWCC	8 cut(s)	7, 309, 316, 1628, 1700, 1872, 2104, 2498
BmeT110I	CYCGRG	3 cut(s)	1456, 1477, 2138
BmiI	GGNNCC	9 cut(s)	8, 310, 433, 502, 721, 722, 991, 1364, 1512
BmrFI	CCNGG	2 cut(s)	588, 1956
BmrI	ACTGGG	2 cut(s)	293, 682
BmsI	GCATC	4 cut(s)	201, 308, 525, 2164
BmtI	GCTAGC	1 cut(s)	516
BmuI	ACTGGG	2 cut(s)	293, 682
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	725
Bpu14I	TTCGAA	1 cut(s)	541
BpuEI	CTTGAG	3 cut(s)	338, 430, 2523
Bsa29I	ATCGAT	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	2418
BsaJI	CCNNGG	5 cut(s)	312, 609, 817, 1954, 1955
BsaWI	WCCGGW	1 cut(s)	2816
Bsc4I	CCNNNNNNNGG	9 cut(s)	593, 1446, 1646, 1859, 2083, 2170, 2405, 2599, 2823
Bse1I	ACTGG	9 cut(s)	264, 288, 466, 688, 1081, 1385, 1474, 2480, 2572
Bse3DI	GCAATG	2 cut(s)	926, 966
BseBI	CCWGG	2 cut(s)	588, 1956
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	5 cut(s)	312, 609, 817, 1954, 1955
BseGI	GGATG	7 cut(s)	1731, 2179, 2383, 2589, 2619, 2635, 2730
BseLI	CCNNNNNNNGG	9 cut(s)	593, 1446, 1646, 1859, 2083, 2170, 2405, 2599, 2823
BseMI	GCAATG	2 cut(s)	926, 966
BseMII	CTCAG	6 cut(s)	337, 548, 739, 760, 2730, 3032
BseNI	ACTGG	9 cut(s)	264, 288, 466, 688, 1081, 1385, 1474, 2480, 2572
BseRI	GAGGAG	1 cut(s)	2001
BseSI	GKGCMC	4 cut(s)	724, 938, 1558, 2071
BseXI	GCAGC	9 cut(s)	168, 1152, 1236, 1344, 1810, 2558, 2796, 2950, 3034
BseYI	CCCAGC	1 cut(s)	1964
BshFI	GGCC	8 cut(s)	432, 722, 1009, 1639, 2276, 2331, 2827, 3010
BshVI	ATCGAT	1 cut(s)	450
BsiHKAI	GWGCWC	4 cut(s)	618, 1558, 2190, 2380
BsiHKCI	CYCGRG	3 cut(s)	1456, 1477, 2138
BsiSI	CCGG	3 cut(s)	429, 2077, 2817
BslFI	GGGAC	2 cut(s)	322, 2731
BslI	CCNNNNNNNGG	9 cut(s)	593, 1446, 1646, 1859, 2083, 2170, 2405, 2599, 2823
BsmAI	GTCTC	2 cut(s)	1733, 1758
BsmFI	GGGAC	2 cut(s)	322, 2731
BsnI	GGCC	8 cut(s)	432, 722, 1009, 1639, 2276, 2331, 2827, 3010
BsoBI	CYCGRG	3 cut(s)	1456, 1477, 2138
Bsp119I	TTCGAA	1 cut(s)	541
Bsp120I	GGGCCC	1 cut(s)	720
Bsp1286I	GDGCHC	8 cut(s)	618, 724, 938, 1558, 2071, 2190, 2380, 2586
Bsp1407I	TGTACA	1 cut(s)	2781
BspACI	CCGC	8 cut(s)	1222, 1626, 1781, 2065, 2250, 2311, 2654, 2991
BspANI	GGCC	8 cut(s)	432, 722, 1009, 1639, 2276, 2331, 2827, 3010
BspCNI	CTCAG	6 cut(s)	336, 547, 738, 759, 2731, 3031
BspDI	ATCGAT	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	1536
BspLI	GGNNCC	9 cut(s)	8, 310, 433, 502, 721, 722, 991, 1364, 1512
BspMAI	CTGCAG	1 cut(s)	1828
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	6 cut(s)	1238, 1505, 1683, 1843, 2084, 2912
BspQI	GCTCTTC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	541
BspTI	CTTAAG	2 cut(s)	2528, 2986
BsrDI	GCAATG	2 cut(s)	926, 966
BsrGI	TGTACA	1 cut(s)	2781
BsrI	ACTGG	9 cut(s)	264, 288, 466, 688, 1081, 1385, 1474, 2480, 2572
BssECI	CCNNGG	5 cut(s)	312, 609, 817, 1954, 1955
BssSI	CACGAG	2 cut(s)	1557, 2869
BssT1I	CCWWGG	3 cut(s)	312, 609, 817
Bst2BI	CACGAG	2 cut(s)	1557, 2869
Bst2UI	CCWGG	2 cut(s)	588, 1956
Bst4CI	ACNGT	9 cut(s)	128, 527, 1051, 1292, 2327, 2462, 2498, 2786, 2955
Bst6I	CTCTTC	4 cut(s)	383, 1162, 2406, 2882
BstAFI	CTTAAG	2 cut(s)	2528, 2986
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	2781
BstBAI	YACGTR	1 cut(s)	2418
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	8 cut(s)	190, 514, 1732, 2067, 2278, 2559, 2582, 2977
BstEII	GGTNACC	1 cut(s)	575
BstENI	CCTNNNNNAGG	1 cut(s)	1857
BstF5I	GGATG	7 cut(s)	1731, 2179, 2383, 2589, 2619, 2635, 2730
BstHHI	GCGC	3 cut(s)	1924, 2354, 2647
BstMAI	GTCTC	2 cut(s)	1733, 1758
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 2543, 2651, 2759
BstNI	CCWGG	2 cut(s)	588, 1956
BstNSI	RCATGY	4 cut(s)	87, 1429, 1765, 2979
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	586, 1954
BstSFI	CTRYAG	3 cut(s)	1291, 1824, 1854
BstSLI	GKGCMC	4 cut(s)	724, 938, 1558, 2071
BstV1I	GCAGC	9 cut(s)	168, 1152, 1236, 1344, 1810, 2558, 2796, 2950, 3034
BstX2I	RGATCY	2 cut(s)	1497, 1675
BstXI	CCANNNNNNTGG	1 cut(s)	818
BstYI	RGATCY	2 cut(s)	1497, 1675
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	861
BsuRI	GGCC	8 cut(s)	432, 722, 1009, 1639, 2276, 2331, 2827, 3010
BsuTUI	ATCGAT	1 cut(s)	450
BtgZI	GCGATG	1 cut(s)	2790
BtsCI	GGATG	7 cut(s)	1731, 2179, 2383, 2589, 2619, 2635, 2730
BtsI	GCAGTG	2 cut(s)	655, 1187
BtsIMutI	CAGTG	3 cut(s)	655, 1074, 1187
Cac8I	GCNNGC	8 cut(s)	190, 514, 1732, 2067, 2278, 2559, 2582, 2977
CaiI	CAGNNNCTG	1 cut(s)	1192
CciI	TCATGA	1 cut(s)	1536
CfoI	GCGC	3 cut(s)	1924, 2354, 2647
ClaI	ATCGAT	1 cut(s)	450
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	6 cut(s)	653, 1326, 1570, 2396, 2743, 2782
CspCI	CAANNNNNGTGG	4 cut(s)	1891, 1926, 2133, 2168
CviQI	GTAC	6 cut(s)	653, 1326, 1570, 2396, 2743, 2782
DraI	TTTAAA	2 cut(s)	396, 2641
EaeI	YGGCCR	2 cut(s)	1637, 2329
Eam1104I	CTCTTC	4 cut(s)	383, 1162, 2406, 2882
EarI	CTCTTC	4 cut(s)	383, 1162, 2406, 2882
EciI	GGCGGA	1 cut(s)	2669
Ecl136II	GAGCTC	2 cut(s)	2188, 2378
Eco130I	CCWWGG	3 cut(s)	312, 609, 817
Eco147I	AGGCCT	1 cut(s)	3010
Eco24I	GRGCYC	4 cut(s)	724, 2190, 2380, 2586
Eco32I	GATATC	2 cut(s)	448, 769
Eco47I	GGWCC	8 cut(s)	7, 309, 316, 1628, 1700, 1872, 2104, 2498
Eco53kI	GAGCTC	2 cut(s)	2188, 2378
Eco57I	CTGAAG	5 cut(s)	444, 569, 1700, 2376, 2387
Eco88I	CYCGRG	3 cut(s)	1456, 1477, 2138
Eco91I	GGTNACC	1 cut(s)	575
EcoICRI	GAGCTC	2 cut(s)	2188, 2378
EcoNI	CCTNNNNNAGG	1 cut(s)	1857
EcoO109I	RGGNCCY	3 cut(s)	309, 720, 721
EcoO65I	GGTNACC	1 cut(s)	575
EcoRI	GAATTC	2 cut(s)	734, 2345
EcoRII	CCWGG	2 cut(s)	586, 1954
EcoRV	GATATC	2 cut(s)	448, 769
EcoT14I	CCWWGG	3 cut(s)	312, 609, 817
EcoT38I	GRGCYC	4 cut(s)	724, 2190, 2380, 2586
ErhI	CCWWGG	3 cut(s)	312, 609, 817
FaqI	GGGAC	2 cut(s)	322, 2731
FauI	CCCGC	2 cut(s)	2058, 2243
FokI	GGATG	7 cut(s)	1738, 2186, 2370, 2576, 2606, 2642, 2717
FriOI	GRGCYC	4 cut(s)	724, 2190, 2380, 2586
FspBI	CTAG	7 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026
GlaI	GCGC	3 cut(s)	1923, 2353, 2646
GsaI	CCCAGC	1 cut(s)	1968
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	8 cut(s)	432, 722, 1009, 1639, 2276, 2331, 2827, 3010
HapII	CCGG	3 cut(s)	429, 2077, 2817
HhaI	GCGC	3 cut(s)	1924, 2354, 2647
Hin6I	GCGC	3 cut(s)	1922, 2352, 2645
HinP1I	GCGC	3 cut(s)	1922, 2352, 2645
HincII	GTYRAC	1 cut(s)	1037
HindII	GTYRAC	1 cut(s)	1037
HindIII	AAGCTT	4 cut(s)	1093, 1462, 1732, 1888
HinfI	GANTC	5 cut(s)	134, 289, 1473, 1705, 1741
HpaII	CCGG	3 cut(s)	429, 2077, 2817
HphI	GGTGA	8 cut(s)	159, 1091, 1201, 1509, 1858, 2333, 2806, 3016
Hpy166II	GTNNAC	6 cut(s)	562, 653, 1037, 1556, 2269, 2782
Hpy8I	GTNNAC	6 cut(s)	562, 653, 1037, 1556, 2269, 2782
Hpy99I	CGWCG	2 cut(s)	2246, 2498
HpyCH4III	ACNGT	9 cut(s)	128, 527, 1051, 1292, 2327, 2462, 2498, 2786, 2955
HpyCH4IV	ACGT	1 cut(s)	2417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 2543, 2651, 2759
HpySE526I	ACGT	1 cut(s)	2417
HspAI	GCGC	3 cut(s)	1922, 2352, 2645
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	4 cut(s)	262, 613, 1584, 2806
Lsp1109I	GCAGC	9 cut(s)	168, 1152, 1236, 1344, 1810, 2558, 2796, 2950, 3034
LweI	GCATC	4 cut(s)	201, 308, 525, 2164
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	7 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026
MaeII	ACGT	1 cut(s)	2417
MfeI	CAATTG	3 cut(s)	598, 939, 1367
MflI	RGATCY	2 cut(s)	1497, 1675
MhlI	GDGCHC	8 cut(s)	618, 724, 938, 1558, 2071, 2190, 2380, 2586
MlsI	TGGCCA	2 cut(s)	1639, 2331
MluNI	TGGCCA	2 cut(s)	1639, 2331
MlyI	GAGTC	2 cut(s)	1467, 1735
MmeI	TCCRAC	5 cut(s)	845, 1271, 1329, 1990, 2525
Mox20I	TGGCCA	2 cut(s)	1639, 2331
MroXI	GAANNNNTTC	3 cut(s)	566, 638, 1233
MscI	TGGCCA	2 cut(s)	1639, 2331
MslI	CAYNNNNRTG	2 cut(s)	2057, 2685
Msp20I	TGGCCA	2 cut(s)	1639, 2331
MspCI	CTTAAG	2 cut(s)	2528, 2986
MspI	CCGG	3 cut(s)	429, 2077, 2817
MspR9I	CCNGG	2 cut(s)	588, 1956
MunI	CAATTG	3 cut(s)	598, 939, 1367
MvaI	CCWGG	2 cut(s)	588, 1956
MwoI	GCNNNNNNNGC	4 cut(s)	198, 2543, 2651, 2759
NheI	GCTAGC	1 cut(s)	512
NlaIV	GGNNCC	9 cut(s)	8, 310, 433, 502, 721, 722, 991, 1364, 1512
NmuCI	GTSAC	4 cut(s)	521, 2321, 2426, 2930
NspI	RCATGY	4 cut(s)	87, 1429, 1765, 2979
NspV	TTCGAA	1 cut(s)	541
PaeI	GCATGC	1 cut(s)	2979
PagI	TCATGA	1 cut(s)	1536
PasI	CCCWGGG	1 cut(s)	1955
PceI	AGGCCT	1 cut(s)	3010
PciI	ACATGT	1 cut(s)	1425
PciSI	GCTCTTC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	890
PdmI	GAANNNNTTC	3 cut(s)	566, 638, 1233
PfeI	GAWTC	3 cut(s)	134, 289, 1705
PflMI	CCANNNNNTGG	2 cut(s)	593, 1646
PleI	GAGTC	2 cut(s)	1467, 1735
PpsI	GAGTC	2 cut(s)	1467, 1735
Ppu21I	YACGTR	1 cut(s)	2418
PpuMI	RGGWCCY	1 cut(s)	309
PscI	ACATGT	1 cut(s)	1425
PshBI	ATTAAT	1 cut(s)	1488
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	2190, 2380
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	586, 1954
PspEI	GGTNACC	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	1964
PspGI	CCWGG	2 cut(s)	586, 1954
PspN4I	GGNNCC	9 cut(s)	8, 310, 433, 502, 721, 722, 991, 1364, 1512
PspOMI	GGGCCC	1 cut(s)	720
PspPPI	RGGWCCY	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	1828
PstNI	CAGNNNCTG	1 cut(s)	1192
PsuI	RGATCY	2 cut(s)	1497, 1675
RsaI	GTAC	6 cut(s)	654, 1327, 1571, 2397, 2744, 2783
RsaNI	GTAC	6 cut(s)	653, 1326, 1570, 2396, 2743, 2782
RseI	CAYNNNNRTG	2 cut(s)	2057, 2685
SacI	GAGCTC	2 cut(s)	2190, 2380
SapI	GCTCTTC	1 cut(s)	383
ScaI	AGTACT	1 cut(s)	1327
SchI	GAGTC	2 cut(s)	1467, 1735
ScrFI	CCNGG	2 cut(s)	588, 1956
SduI	GDGCHC	8 cut(s)	618, 724, 938, 1558, 2071, 2190, 2380, 2586
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	201, 308, 525, 2164
SfcI	CTRYAG	3 cut(s)	1291, 1824, 1854
SfuI	TTCGAA	1 cut(s)	541
SinI	GGWCC	8 cut(s)	7, 309, 316, 1628, 1700, 1872, 2104, 2498
SmiMI	CAYNNNNRTG	2 cut(s)	2057, 2685
SmlI	CTYRAG	5 cut(s)	353, 409, 2528, 2538, 2986
SmoI	CTYRAG	5 cut(s)	353, 409, 2528, 2538, 2986
SpeI	ACTAGT	2 cut(s)	965, 2149
SphI	GCATGC	1 cut(s)	2979
SseBI	AGGCCT	1 cut(s)	3010
SsiI	CCGC	8 cut(s)	1222, 1626, 1781, 2065, 2250, 2311, 2654, 2991
SspMI	CTAG	7 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026
SstI	GAGCTC	2 cut(s)	2190, 2380
StuI	AGGCCT	1 cut(s)	3010
StyD4I	CCNGG	2 cut(s)	586, 1954
StyI	CCWWGG	3 cut(s)	312, 609, 817
TaaI	ACNGT	9 cut(s)	128, 527, 1051, 1292, 2327, 2462, 2498, 2786, 2955
TaiI	ACGT	1 cut(s)	2420
TaqI	TCGA	7 cut(s)	444, 450, 541, 884, 893, 2493, 3039
TaqII	GACCGA	1 cut(s)	1717
TatI	WGTACW	4 cut(s)	1325, 1569, 2742, 2781
TauI	GCSGC	1 cut(s)	2314
TfiI	GAWTC	3 cut(s)	134, 289, 1705
TscAI	CASTG	3 cut(s)	655, 1081, 1187
TseFI	GTSAC	4 cut(s)	521, 2321, 2426, 2930
TseI	GCWGC	9 cut(s)	156, 1140, 1224, 1332, 1823, 2546, 2809, 2938, 3022
Tsp45I	GTSAC	4 cut(s)	521, 2321, 2426, 2930
TspRI	CASTG	3 cut(s)	655, 1081, 1187
Van91I	CCANNNNNTGG	2 cut(s)	593, 1646
Vha464I	CTTAAG	2 cut(s)	2528, 2986
VneI	GTGCAC	1 cut(s)	1554
VpaK11BI	GGWCC	8 cut(s)	7, 309, 316, 1628, 1700, 1872, 2104, 2498
VspI	ATTAAT	1 cut(s)	1488
XagI	CCTNNNNNAGG	1 cut(s)	1857
XapI	RAATTY	9 cut(s)	161, 391, 477, 734, 832, 1170, 1882, 2345, 2635
XbaI	TCTAGA	1 cut(s)	2509
XceI	RCATGY	4 cut(s)	87, 1429, 1765, 2979
XmnI	GAANNNNTTC	3 cut(s)	566, 638, 1233
XspI	CTAG	7 cut(s)	513, 626, 966, 1329, 2150, 2510, 3026
ZrmI	AGTACT	1 cut(s)	1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.