RLG00000007768

Phytosulfokine receptor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
20830601 .. 20832679
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007768

Sequence Viewer

Length: 2079 bp
ATGGGGGTTCAAGAAATCTTTGTAGTCATCCTTGTTACTGGATTTTGCTTTCAAACTCAAGTTTCGAGCTTTCAGAACCTGACGTGCAATCCAAATGACTGTCAAGCATTGCAAGATTTCATGACAGGTTTATCTCCTGTTATTGATGGATGGGGAAATGATTTCTCTTCTGATTGCTGCAAATGGCCAGGTATCACTTGCAACTCTTCATCTTCTCTTGGACTAAATGATTCTCTTGATAGCTACAGAGTGGTTAAGTTGGAGCTTCCAAGTAGAAGACTAGTTGGCAACATTTCTGAATCCATAGGCAATTTGGAACAGCTTAGGATACTTAACCTATCAGACAATATCTTCAATGACACGCTTCCAATCTCATTGTTTCATCTGCCAAATTTAGACCTCTTAGATCTAAGCTCTAATTTTCTTTTTGGTCCCATTCCAGTTGTTTCTTATTTACCTTCAATCCAGTCCCTTGACATTTCTGATAACAACTTGAATGGTCCTCTTCCGGCAAGTATCTGTGTCAATTCACATCATCTTCGTGTACTAAACTTGGCTGTGAACTACTTGTCTGGTGACCTCCCACCAGGTCTTGGAAATTGTAGTTCCTTGCATGAACTTCATCTCTACGATAATGATCTCACAGGTGGAATATCTGAAAGCTTAGTTCGGCTGCAAAATCTAACCCATTTGAGCATTCAAAGTAACAAGCTTTCCGGGATGTTGAGTGAAGTTAGTAACCTCATCAACCTTGTTCATTTGGATATCTCCATTAATTTATTTTCAGGAACTATTCCGGATGTTTTCCACAGCCTTGGAAGATTACAGTGCTTTGTTGCTCATTCAAATTATTTCAGTGGTCAGATACCCCTTTCCTTGTCAAATTCCCCAACTATCTCCATGCTTAATGTGAGAAACAATTCATTGTCAGGTCCAATTTATCTAAACTGTTCAGCAATGACAAGTTTGGCCTCTCTTGATCTAGGTTCAAACCAGTTTGATGGGGTTATTCCATCCAATCTTCCCTCTTGTCGGCATTTGAATGGTATAAATCTTGCCCGGAACAACTTGAGTGGCCAAATACCTGAAACCTTTAAGAATTTTCATACTCTCCAATACCTCTCACTTTCGAACGCCAGCCATTCTAATATATCATCTACCCTTCAAATTTTACAGCAGTGTCAGAATCTAACTACTTTGATTCTCACCATGAACTTCTATGATGAAGAATTGCCTTTTGATCCAACCATTCATTTTGCAAAGTTGAAGGTTCTCATTATTGCACATTGTAGGCTCACAGGTTCAATGCCCCAGTGGTTGAGAAACAGCAACATGTTGCAGTTGTTAGATTTATCTTGGAACCGCTTTGAAGGAACAATTCCGGTGTGGTTTGGTAATTTCAGTAGTCTCTTCTACTTAGACATATCAAACAATTCTCTTACTGGAGATATCCCTAGAAGCTTAACTGAACTAAGGAGCCTCATTTATTGGAATATTTGCTCGGTTCAGGAATCTTCCCCTAAATTTCCTCTTTTCCAGAAAAAGAATGCAAGTGCAAGGGGATTGCAACACAATAAAGTTTCGAGCTTTCAACCTACGCTGGCACTTGACAACAATAATCTCAGTGGAGAAATCTGGCCAGAGTTTGGGAACCTGAAATCCCTTCATGTATTGGATCTGAAATTCAACAATCTGTCAGGACCAATTCCGAGTAGTTTATCTTCAATGACCAATTTAGAGACTCTGGATTTGTCTCATAACAAACTTTCAGGGGCAATACCACCCTCGTTGGTTAATCTCTGCTCATTGTCCAAGTTTTCTGTTGCATACAATCAATTGGATGGAGAGATCCCTGCAGGACATCAGTTTGGGACCTTCCTAAATTCAAGCTTCGAAGGGAATAATCTTTGCGGCGATCCTGCTCCCCCTTGTCTATCTTTTTCAAAACCACAGCCACAACCACACAGCAAATCAAGAGTAGAATACAGGGGAGTTGTCATTGGAATAGCTGTGGGATTTGTATATGGAGTAGCTTGCTTTATTGTAACAGATAGATATGTATGGACTTGGCATTTCTAA

Protein Analysis

693

Amino Acids

76.22

Weight (kDa)

5.68

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 1e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 151 - 302 1e-06 Leucine-rich repeat region
LRR_8 PF13855 322 - 378 2.4e-07 Leucine rich repeat
LRR_8 PF13855 533 - 589 1.1e-06 Leucine rich repeat
LRR_8 PF13855 554 - 613 3.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 593, 1646
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 2 cut(s) 1363, 1911
AclWI GGATC 4 cut(s) 1235, 1683, 1843, 1910
AcoI YGGCCR 3 cut(s) 185, 1075, 1637
AcsI RAATTY 7 cut(s) 391, 883, 1099, 1167, 1523, 1682, 1882
AfaI GTAC 1 cut(s) 546
AfiI CCNNNNNNNGG 3 cut(s) 593, 1032, 1646
AflIII ACRYGT 1 cut(s) 1332
AhlI ACTAGT 1 cut(s) 280
AjiI CACGTC 1 cut(s) 84
AjnI CCWGG 2 cut(s) 187, 586
AloI GAACNNNNNNTCC 2 cut(s) 1643, 1675
Alw26I GTCTC 3 cut(s) 1412, 1733, 1758
AlwI GGATC 4 cut(s) 1235, 1683, 1843, 1910
AlwNI CAGNNNCTG 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 4 cut(s) 185, 969, 1075, 1637
ApeKI GCWGC 2 cut(s) 177, 673
ApoI RAATTY 7 cut(s) 391, 883, 1099, 1167, 1523, 1682, 1882
ArsI GACNNNNNNTTYG 2 cut(s) 1732, 1764
AseI ATTAAT 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 919
AspS9I GGNCC 5 cut(s) 431, 500, 932, 1700, 1872
AsuC2I CCSGG 2 cut(s) 718, 1060
AsuHPI GGTGA 2 cut(s) 587, 1198
AsuII TTCGAA 2 cut(s) 1130, 1893
AvaII GGWCC 5 cut(s) 431, 500, 932, 1700, 1872
BalI TGGCCA 3 cut(s) 187, 1077, 1639
BarI GAAGNNNNNNTAC 2 cut(s) 1705, 1737
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 2 cut(s) 164, 660
BccI CCATC 5 cut(s) 140, 144, 995, 1021, 1835
BciT130I CCWGG 2 cut(s) 189, 588
BciVI GTATCC 1 cut(s) 321
BcnI CCSGG 2 cut(s) 718, 1060
BcoDI GTCTC 3 cut(s) 1412, 1733, 1758
BcuI ACTAGT 1 cut(s) 280
BfaI CTAG 3 cut(s) 281, 983, 1455
BfmI CTRYAG 2 cut(s) 244, 1854
BfuI GTATCC 1 cut(s) 321
BglII AGATCT 1 cut(s) 406
BisI GCNGC 3 cut(s) 178, 674, 1912
BlsI GCNGC 3 cut(s) 179, 675, 1913
Bme1390I CCNGG 4 cut(s) 189, 588, 718, 1060
Bme18I GGWCC 5 cut(s) 431, 500, 932, 1700, 1872
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 5 cut(s) 431, 500, 932, 1700, 1872
BmiI GGNNCC 5 cut(s) 433, 1361, 1478, 1652, 1873
BmrFI CCNGG 4 cut(s) 189, 588, 718, 1060
BmrI ACTGGG 1 cut(s) 1306
BmuI ACTGGG 1 cut(s) 1306
BpiI GAAGAC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 1464
Bpu10I CCTNAGC 1 cut(s) 323
Bpu14I TTCGAA 2 cut(s) 1130, 1893
BpuEI CTTGAG 2 cut(s) 42, 1090
BpuMI CCSGG 2 cut(s) 718, 1060
BsaBI GATNNNNATC 1 cut(s) 636
BsaJI CCNNGG 1 cut(s) 814
BsaWI WCCGGW 2 cut(s) 796, 1381
Bsc4I CCNNNNNNNGG 3 cut(s) 593, 1032, 1646
Bse1I ACTGG 6 cut(s) 43, 440, 466, 994, 1312, 1447
Bse3DI GCAATG 2 cut(s) 107, 963
Bse8I GATNNNNATC 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 2 cut(s) 189, 588
BseDI CCNNGG 1 cut(s) 814
BseGI GGATG 6 cut(s) 27, 155, 726, 805, 1013, 1846
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 3 cut(s) 593, 1032, 1646
BseMI GCAATG 2 cut(s) 107, 963
BseMII CTCAG 1 cut(s) 1636
BseNI ACTGG 6 cut(s) 43, 440, 466, 994, 1312, 1447
BseXI GCAGC 2 cut(s) 164, 660
BshFI GGCC 4 cut(s) 187, 971, 1077, 1639
BsiSI CCGG 5 cut(s) 509, 717, 797, 1060, 1382
BslFI GGGAC 3 cut(s) 417, 454, 1885
BslI CCNNNNNNNGG 3 cut(s) 593, 1032, 1646
BsmAI GTCTC 3 cut(s) 1412, 1733, 1758
BsmFI GGGAC 3 cut(s) 417, 454, 1885
BsmI GAATGC 2 cut(s) 696, 1552
BsnI GGCC 4 cut(s) 187, 971, 1077, 1639
Bsp119I TTCGAA 2 cut(s) 1130, 1893
Bsp13I TCCGGA 1 cut(s) 796
Bsp143I GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
BspACI CCGC 2 cut(s) 1363, 1911
BspANI GGCC 4 cut(s) 187, 971, 1077, 1639
BspCNI CTCAG 1 cut(s) 1635
BspEI TCCGGA 1 cut(s) 796
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 5 cut(s) 433, 1361, 1478, 1652, 1873
BspMAI CTGCAG 1 cut(s) 1858
BspPI GGATC 4 cut(s) 1235, 1683, 1843, 1910
BspT104I TTCGAA 2 cut(s) 1130, 1893
BsrDI GCAATG 2 cut(s) 107, 963
BsrI ACTGG 6 cut(s) 43, 440, 466, 994, 1312, 1447
BssECI CCNNGG 1 cut(s) 814
BssMI GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
BssT1I CCWWGG 1 cut(s) 814
Bst2UI CCWGG 2 cut(s) 189, 588
Bst4CI ACNGT 3 cut(s) 101, 828, 950
Bst6I CTCTTC 4 cut(s) 172, 211, 510, 1415
BstBI TTCGAA 2 cut(s) 1130, 1893
BstC8I GCNNGC 3 cut(s) 1138, 1602, 2035
BstDEI CTNAG 7 cut(s) 323, 403, 410, 664, 1417, 1472, 1622
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 6 cut(s) 27, 155, 726, 805, 1013, 1846
BstKTI GATC 7 cut(s) 409, 640, 982, 1243, 1678, 1851, 1918
BstMAI GTCTC 3 cut(s) 1412, 1733, 1758
BstMBI GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
BstNI CCWGG 2 cut(s) 189, 588
BstNSI RCATGY 1 cut(s) 1336
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 4 cut(s) 187, 586, 716, 1058
BstSFI CTRYAG 2 cut(s) 244, 1854
BstV1I GCAGC 2 cut(s) 164, 660
BstV2I GAAGAC 1 cut(s) 283
BstX2I RGATCY 3 cut(s) 406, 1675, 1848
BstXI CCANNNNNNTGG 2 cut(s) 815, 1001
BstYI RGATCY 3 cut(s) 406, 1675, 1848
BsuI GTATCC 1 cut(s) 321
BsuRI GGCC 4 cut(s) 187, 971, 1077, 1639
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 6 cut(s) 27, 155, 726, 805, 1013, 1846
BtsI GCAGTG 1 cut(s) 1184
BtsIMutI CAGTG 5 cut(s) 833, 862, 1184, 1319, 1630
Cac8I GCNNGC 3 cut(s) 1138, 1602, 2035
CaiI CAGNNNCTG 1 cut(s) 79
CciI TCATGA 1 cut(s) 120
Cfr13I GGNCC 5 cut(s) 431, 500, 932, 1700, 1872
CsiI ACCWGGT 1 cut(s) 586
Csp6I GTAC 1 cut(s) 545
CspCI CAANNNNNGTGG 4 cut(s) 1054, 1089, 1770, 1805
CviAII CATG 6 cut(s) 121, 614, 901, 1210, 1333, 1667
CviQI GTAC 1 cut(s) 545
DdeI CTNAG 7 cut(s) 323, 403, 410, 664, 1417, 1472, 1622
DpnI GATC 7 cut(s) 408, 639, 981, 1242, 1677, 1850, 1917
DpnII GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
EaeI YGGCCR 3 cut(s) 185, 1075, 1637
Eam1104I CTCTTC 4 cut(s) 172, 211, 510, 1415
EarI CTCTTC 4 cut(s) 172, 211, 510, 1415
Eco130I CCWWGG 1 cut(s) 814
Eco32I GATATC 2 cut(s) 766, 1450
Eco47I GGWCC 5 cut(s) 431, 500, 932, 1700, 1872
Eco91I GGTNACC 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 1872
EcoO65I GGTNACC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 187, 586
EcoRV GATATC 2 cut(s) 766, 1450
EcoT14I CCWWGG 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 814
FaeI CATG 6 cut(s) 124, 617, 904, 1213, 1336, 1670
FaqI GGGAC 3 cut(s) 417, 454, 1885
FatI CATG 6 cut(s) 120, 613, 900, 1209, 1332, 1666
Fnu4HI GCNGC 3 cut(s) 178, 674, 1912
FokI GGATG 6 cut(s) 14, 162, 733, 812, 1000, 1853
Fsp4HI GCNGC 3 cut(s) 178, 674, 1912
FspBI CTAG 3 cut(s) 281, 983, 1455
GluI GCNGC 3 cut(s) 178, 674, 1912
GsuI CTGGAG 1 cut(s) 1464
HaeIII GGCC 4 cut(s) 187, 971, 1077, 1639
HapII CCGG 5 cut(s) 509, 717, 797, 1060, 1382
Hin1II CATG 6 cut(s) 124, 617, 904, 1213, 1336, 1670
HindIII AAGCTT 4 cut(s) 661, 710, 1459, 1888
HinfI GANTC 6 cut(s) 230, 299, 1186, 1201, 1511, 1741
HpaII CCGG 5 cut(s) 509, 717, 797, 1060, 1382
HphI GGTGA 2 cut(s) 587, 1198
Hpy166II GTNNAC 2 cut(s) 545, 562
Hpy8I GTNNAC 2 cut(s) 545, 562
HpyAV CCTTC 7 cut(s) 468, 1172, 1261, 1364, 1673, 1885, 1889
HpyCH4III ACNGT 3 cut(s) 101, 828, 950
HpyCH4IV ACGT 1 cut(s) 83
HpyF3I CTNAG 7 cut(s) 323, 403, 410, 664, 1417, 1472, 1622
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 6 cut(s) 124, 617, 904, 1213, 1336, 1670
Kpn2I TCCGGA 1 cut(s) 796
Kzo9I GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
LmnI GCTCC 3 cut(s) 262, 1476, 1927
Lsp1109I GCAGC 2 cut(s) 164, 660
MabI ACCWGGT 1 cut(s) 586
MaeI CTAG 3 cut(s) 281, 983, 1455
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 5 cut(s) 34, 575, 704, 737, 2044
MalI GATC 7 cut(s) 408, 639, 981, 1242, 1677, 1850, 1917
MboI GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
MfeI CAATTG 1 cut(s) 1835
MflI RGATCY 3 cut(s) 406, 1675, 1848
MlsI TGGCCA 3 cut(s) 187, 1077, 1639
MluNI TGGCCA 3 cut(s) 187, 1077, 1639
MlyI GAGTC 1 cut(s) 1735
MmeI TCCRAC 2 cut(s) 240, 1268
Mox20I TGGCCA 3 cut(s) 187, 1077, 1639
MroI TCCGGA 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 919
MscI TGGCCA 3 cut(s) 187, 1077, 1639
MseI TTAA 7 cut(s) 255, 333, 774, 906, 1095, 1463, 1794
MslI CAYNNNNRTG 2 cut(s) 540, 1041
Msp20I TGGCCA 3 cut(s) 187, 1077, 1639
MspI CCGG 5 cut(s) 509, 717, 797, 1060, 1382
MspR9I CCNGG 4 cut(s) 189, 588, 718, 1060
MunI CAATTG 1 cut(s) 1835
Mva1269I GAATGC 2 cut(s) 696, 1552
MvaI CCWGG 2 cut(s) 189, 588
NciI CCSGG 2 cut(s) 718, 1060
NdeII GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
NlaIII CATG 6 cut(s) 124, 617, 904, 1213, 1336, 1670
NlaIV GGNNCC 5 cut(s) 433, 1361, 1478, 1652, 1873
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 1336
NspV TTCGAA 2 cut(s) 1130, 1893
PagI TCATGA 1 cut(s) 120
PciI ACATGT 1 cut(s) 1332
PctI GAATGC 2 cut(s) 696, 1552
PdmI GAANNNNTTC 1 cut(s) 919
PfeI GAWTC 5 cut(s) 230, 299, 1186, 1201, 1511
PflMI CCANNNNNTGG 2 cut(s) 593, 1646
PfoI TCCNGGA 1 cut(s) 716
PkrI GCNGC 3 cut(s) 179, 675, 1913
PleI GAGTC 1 cut(s) 1735
PpsI GAGTC 1 cut(s) 1735
PpuMI RGGWCCY 1 cut(s) 1872
PscI ACATGT 1 cut(s) 1332
PshBI ATTAAT 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 1872
Psp6I CCWGG 2 cut(s) 187, 586
PspEI GGTNACC 1 cut(s) 575
PspGI CCWGG 2 cut(s) 187, 586
PspN4I GGNNCC 5 cut(s) 433, 1361, 1478, 1652, 1873
PspPI GGNCC 5 cut(s) 431, 500, 932, 1700, 1872
PspPPI RGGWCCY 1 cut(s) 1872
PstI CTGCAG 1 cut(s) 1858
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 3 cut(s) 406, 1675, 1848
RsaI GTAC 1 cut(s) 546
RsaNI GTAC 1 cut(s) 545
RseI CAYNNNNRTG 2 cut(s) 540, 1041
SaqAI TTAA 7 cut(s) 255, 333, 774, 906, 1095, 1463, 1794
SatI GCNGC 3 cut(s) 178, 674, 1912
Sau3AI GATC 7 cut(s) 406, 637, 979, 1240, 1675, 1848, 1915
Sau96I GGNCC 5 cut(s) 431, 500, 932, 1700, 1872
SbfI CCTGCAGG 1 cut(s) 1858
SchI GAGTC 1 cut(s) 1735
ScrFI CCNGG 4 cut(s) 189, 588, 718, 1060
SdaI CCTGCAGG 1 cut(s) 1858
SexAI ACCWGGT 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 244, 1854
SfuI TTCGAA 2 cut(s) 1130, 1893
SinI GGWCC 5 cut(s) 431, 500, 932, 1700, 1872
SmiMI CAYNNNNRTG 2 cut(s) 540, 1041
SmlI CTYRAG 2 cut(s) 57, 1069
SmoI CTYRAG 2 cut(s) 57, 1069
SpeI ACTAGT 1 cut(s) 280
Sse8387I CCTGCAGG 1 cut(s) 1858
SsiI CCGC 2 cut(s) 1363, 1911
SspI AATATT 1 cut(s) 1495
SspMI CTAG 3 cut(s) 281, 983, 1455
StyD4I CCNGG 4 cut(s) 187, 586, 716, 1058
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 3 cut(s) 101, 828, 950
TaiI ACGT 1 cut(s) 86
TaqI TCGA 4 cut(s) 65, 1130, 1583, 1893
TatI WGTACW 1 cut(s) 544
TauI GCSGC 1 cut(s) 1914
TfiI GAWTC 5 cut(s) 230, 299, 1186, 1201, 1511
Tru1I TTAA 7 cut(s) 255, 333, 774, 906, 1095, 1463, 1794
Tru9I TTAA 7 cut(s) 255, 333, 774, 906, 1095, 1463, 1794
TscAI CASTG 5 cut(s) 833, 862, 1184, 1319, 1630
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 177, 673
Tsp45I GTSAC 1 cut(s) 575
TspRI CASTG 5 cut(s) 833, 862, 1184, 1319, 1630
Van91I CCANNNNNTGG 2 cut(s) 593, 1646
VpaK11BI GGWCC 5 cut(s) 431, 500, 932, 1700, 1872
VspI ATTAAT 1 cut(s) 774
XapI RAATTY 7 cut(s) 391, 883, 1099, 1167, 1523, 1682, 1882
XceI RCATGY 1 cut(s) 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 919
XspI CTAG 3 cut(s) 281, 983, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.