Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Reverse (-)

54338715 .. 54340103

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0372000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATGGCTAGGCTCGAGACAGACCAGCTCAAACAGCTTAAAGACATCTTCATGCGGTTCGACATGGACTCCGATGGTAGCTTAACCCACCTGGAGCTGGCCGCCCTGCTCCGCTCCCTAGGCCTCAAGCCCCAGGGCGACCAGCTCCACAGGTTAATGGCCAACATGGACGCCAATGGAAACGGCGCCGTTGAGTTCGAGGAGTTGGTAAACGCCATCATGCCGAACATGAACGACGAGATTCTTGTCAACCAAGAGCAGCTCATGGAGGTGTTCCGGTCGTTCGACCGCGACGGTAACGGCTACATAACGGCGGCAGAGCTGGCCGGGTCGATGGCCAAGATGGGCCACCCCTTGACGTACAGGGAGTTGTCGGATATGATGAGGGAGGCGGACACCAACGGTGACGGCGTCATCAGCTTCAACGAGTTCGCCACCATCATGTCTCGGTCCGCCGCCAACTTTCTCGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

158

Amino Acids

17.63

Weight (kDa)

4.5

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	11 - 73	8.1e-11	EF-hand domain pair
EF-hand_7	PF13499	86 - 149	2.7e-16	EF-hand domain pair
EF-hand_6	PF13405	87 - 115	9.5e-07	EF-hand domain
EF-hand_1	PF00036	88 - 114	3.1e-06	EF hand domain
EF-hand_8	PF13833	103 - 148	1.6e-08	EF-hand domain pair
EF-hand_1	PF00036	123 - 150	1.3e-08	EF hand domain
EF-hand_5	PF13202	126 - 148	6.5e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	291
AciI	CCGC	8 cut(s)	55, 102, 112, 289, 314, 392, 453, 456
AcoI	YGGCCR	4 cut(s)	99, 159, 324, 336
AcyI	GRCGYC	3 cut(s)	171, 186, 411
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	90, 132
AluBI	AGCT	8 cut(s)	28, 37, 81, 97, 145, 262, 322, 420
AluI	AGCT	8 cut(s)	28, 37, 81, 97, 145, 262, 322, 420
Alw26I	GTCTC	2 cut(s)	11, 450
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	6 cut(s)	99, 121, 159, 324, 336, 346
ApeKI	GCWGC	1 cut(s)	259
AspA2I	CCTAGG	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	346, 450
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	450
AvrII	CCTAGG	1 cut(s)	118
BalI	TGGCCA	2 cut(s)	161, 338
BanI	GGYRCC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	5 cut(s)	68, 224, 328, 337, 446
BceAI	ACGGC	5 cut(s)	173, 199, 316, 327, 424
BciT130I	CCWGG	2 cut(s)	92, 134
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	11, 450
BfaI	CTAG	2 cut(s)	9, 119
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	4 cut(s)	102, 260, 315, 456
BlnI	CCTAGG	1 cut(s)	118
BlsI	GCNGC	4 cut(s)	103, 261, 316, 457
Bme1390I	CCNGG	3 cut(s)	92, 134, 328
Bme18I	GGWCC	1 cut(s)	450
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	346, 450
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	92, 134, 328
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	328
BsaHI	GRCGYC	3 cut(s)	171, 186, 411
BsaJI	CCNNGG	3 cut(s)	118, 132, 133
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	92, 134
BseDI	CCNNGG	3 cut(s)	118, 132, 133
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	2 cut(s)	281, 289
BshFI	GGCC	6 cut(s)	101, 123, 161, 326, 338, 348
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	281, 289
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	277, 327
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	11, 450
BsnI	GGCC	6 cut(s)	101, 123, 161, 326, 338, 348
BsoBI	CYCGRG	1 cut(s)	14
BspACI	CCGC	8 cut(s)	55, 102, 112, 289, 314, 392, 453, 456
BspANI	GGCC	6 cut(s)	101, 123, 161, 326, 338, 348
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	118, 132, 133
BssNI	GRCGYC	3 cut(s)	171, 186, 411
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	92, 134
Bst4CI	ACNGT	2 cut(s)	296, 404
BstACI	GRCGYC	3 cut(s)	171, 186, 411
BstC8I	GCNNGC	2 cut(s)	99, 324
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstMAI	GTCTC	2 cut(s)	11, 450
BstMCI	CGRYCG	2 cut(s)	281, 289
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 120, 323, 417
BstNI	CCWGG	2 cut(s)	92, 134
BstSCI	CCNGG	3 cut(s)	90, 132, 326
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	6 cut(s)	101, 123, 161, 326, 338, 348
Cac8I	GCNNGC	2 cut(s)	99, 324
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	346, 450
CpoI	CGGWCCG	1 cut(s)	450
CseI	GACGC	2 cut(s)	179, 400
Csp6I	GTAC	1 cut(s)	361
CspI	CGGWCCG	1 cut(s)	450
CviAII	CATG	7 cut(s)	52, 64, 166, 220, 229, 265, 442
CviQI	GTAC	1 cut(s)	361
DinI	GGCGCC	1 cut(s)	187
EaeI	YGGCCR	4 cut(s)	99, 159, 324, 336
EciI	GGCGGA	2 cut(s)	407, 442
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	90, 132
EcoT14I	CCWWGG	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
FaiI	YATR	9 cut(s)	53, 65, 167, 221, 230, 266, 308, 380, 443
FatI	CATG	7 cut(s)	51, 63, 165, 219, 228, 264, 441
Fnu4HI	GCNGC	4 cut(s)	102, 260, 315, 456
Fsp4HI	GCNGC	4 cut(s)	102, 260, 315, 456
FspBI	CTAG	2 cut(s)	9, 119
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	4 cut(s)	102, 260, 315, 456
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	6 cut(s)	101, 123, 161, 326, 338, 348
HapII	CCGG	2 cut(s)	277, 327
HgaI	GACGC	2 cut(s)	179, 400
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	3 cut(s)	171, 186, 411
Hin1II	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	68, 241, 471
HpaII	CCGG	2 cut(s)	277, 327
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	211, 250
Hpy188I	TCNGA	4 cut(s)	73, 376, 470, 476
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	2 cut(s)	211, 250
Hpy99I	CGWCG	2 cut(s)	239, 296
HpyCH4III	ACNGT	2 cut(s)	296, 404
HpyCH4IV	ACGT	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 120, 323, 417
HpySE526I	ACGT	1 cut(s)	359
Hsp92I	GRCGYC	3 cut(s)	171, 186, 411
Hsp92II	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
HspAI	GCGC	1 cut(s)	186
KasI	GGCGCC	1 cut(s)	185
LmnI	GCTCC	4 cut(s)	94, 114, 119, 150
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	9, 119
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	296, 404
MbiI	CCGCTC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	40
MlsI	TGGCCA	2 cut(s)	161, 338
MluNI	TGGCCA	2 cut(s)	161, 338
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	5 cut(s)	134, 193, 262, 378, 382
Mox20I	TGGCCA	2 cut(s)	161, 338
MscI	TGGCCA	2 cut(s)	161, 338
MseI	TTAA	3 cut(s)	39, 83, 155
MslI	CAYNNNNRTG	3 cut(s)	50, 269, 440
Msp20I	TGGCCA	2 cut(s)	161, 338
MspI	CCGG	2 cut(s)	277, 327
MspR9I	CCNGG	3 cut(s)	92, 134, 328
MvaI	CCWGG	2 cut(s)	92, 134
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	34, 120, 323, 417
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	328
NlaIII	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	14
PasI	CCCWGGG	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	241, 471
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	103, 261, 316, 457
PleI	GAGTC	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	90, 132
PspGI	CCWGG	2 cut(s)	90, 132
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	346, 450
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	3 cut(s)	50, 269, 440
Rsr2I	CGGWCCG	1 cut(s)	450
RsrII	CGGWCCG	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	39, 83, 155
SatI	GCNGC	4 cut(s)	102, 260, 315, 456
Sau96I	GGNCC	2 cut(s)	346, 450
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	92, 134, 328
SfoI	GGCGCC	1 cut(s)	187
Sfr274I	CTCGAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	450
SlaI	CTCGAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	3 cut(s)	50, 269, 440
SmlI	CTYRAG	2 cut(s)	14, 125
SmoI	CTYRAG	2 cut(s)	14, 125
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	8 cut(s)	55, 102, 112, 289, 314, 392, 453, 456
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	9, 119
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	90, 132, 326
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	296, 404
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	5 cut(s)	15, 60, 198, 285, 332
TaqII	GACCGA	1 cut(s)	438
TauI	GCSGC	3 cut(s)	104, 317, 458
TfiI	GAWTC	2 cut(s)	241, 471
Tru1I	TTAA	3 cut(s)	39, 83, 155
Tru9I	TTAA	3 cut(s)	39, 83, 155
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	40, 245
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	450
XhoI	CTCGAG	1 cut(s)	14
XmaJI	CCTAGG	1 cut(s)	118
XspI	CTAG	2 cut(s)	9, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.