Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000784

Physical Location & Seq

Genomic Coordinates Reverse (-)

52507460 .. 52524177

Gene Structure 16718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG225100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACAGGTTTATCTCCTGTTATTGATGGATGGGGAAATGATTTCTCTTCTGATTGCTGCAAATGGCCAGGTATCACTTGCAACTCTTCATCTTCTCTTGGACTGAATGATTCTCTTGATAGCTATAGAGTGGTTAAGTTGGAGCTTCCAAGTAGAAGACTAGTTGGCAACATTTCTAAATCTATAGTTGTTTTTGATTTGCCTTCAATCCAGTCCCTTGACATTTCTGATAACAACTTGAATGGTCCTCTTCCGGCAAGTATCTGTGTCAATTCACATCACCTTCGTGTACTAAACTTGGCTGTGAACTACTTTTCTGGTGACCTCCCACCAGGTCTTGGAAATTGTAGTTCCTTGCATGACCTCCATCTCTACGATAATGATCTCACAGGTGGAATATCTGAAAGCTTAGTTCGGCTACAAAATCTAACCCATTTGAGCATTCAAAGTAACAAGCTTTCCGGGATGCTGAGTGAAGTTAGAACTATTCCGGATGTTTTCCACAGCCTTGGAAGATTACAGTACTTTGTTGCTCATTCAAATAATTTCAGTGGTCAGATACCCTTTTCCTTGTCAAATTCCCCAACTATCTCCATGCTTAATGAACCTTCCCCTGAATTTCCTCTTTTCCAGAAAAAGAATACAAGTGAAAGGGGATTGCAGCACAATAAAGTTTCGAGCTTTCAACCTACGCTGGCACTTGACAACAATAATCTCAGTGGAGAAATCTGGCCAGAGTTTGGGAACCTGAAATCCCTTCATGTATTGGATCTGAAATTCAACAGTCTATCAGGACCAATTCCAAGCTCATTCTTTTCCATCATGCCCCAAACTTCTGGTGCCGGACAATCTGGGTCCAACCAGTCTGCTGCTTCTGAACAATCTGAGTCATCCTCTGCTTGCAACGAAATTTATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

306

Amino Acids

33.13

Weight (kDa)

5.38

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	60 - 184	1e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02220
fragaria_vesca	FvH4_4g36380 FvH4_4g36410 FvH4_4g36411 FvH4_4g36420 FvH4_4g36420 FvH4_4g36601 FvH4_4g36601 FvH4_4g36601
malus_domestica	MD13G1009400.v1.1 MD13G1088300.v1.1 MD16G1007400.v1.1 MD16G1007500.v1.1 MD16G1007600.v1.1
prunus_persica	Prupe.1G343200_v2.0.a1 Prupe.1G343300_v2.0.a1
pyrus_communis	pycom13g00800 pycom16g00700 pycom16g00710 pycom16g00740 pycom16g00750
rosa_chinensis	RchiOBHm_Chr4g0420391 RchiOBHm_Chr4g0446131 RchiOBHm_Chr4g0446161 RchiOBHm_Chr4g0446181 RchiOBHm_Chr4g0446501
rosa_laevigata	RLG00000005654 RLG00000005685 RLG00000005686 RLG00000005687 RLG00000005689 RLG00000007768
rosa_multiflora	Rmu_co8048352.1_g000001 Rmu_sc0009254.1_g000002 Rmu_sc0009254.1_g000003 Rmu_sc0012061.1_g000004 Rmu_sc0024859.1_g000001 Rmu_sc0041209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386530 Rroxscaffold_5G00386560 Rroxscaffold_5G00386570
rosa_rugosa	Rorug04G0163600 Rorug04G0368100 Rorug04G0368200 Rorug04G0368300 Rorug04G0372000
rosa_samantha	Rh4AG225100 Rh4AG429800 Rh4AG430000 Rh4AG430200 Rh4AG433600 Rh4BG439200 Rh4BG439500 Rh4BG439700 Rh4BG442700 Rh4CG239400 Rh4CG456500 Rh4CG456800 Rh4CG456900 Rh4CG460100 Rh4DG223500 Rh4DG437700 Rh4DG437900 Rh4DG438100 Rh4DG441400
rosa_wichuraiana	Rw4G019430 Rw4G036720 Rw4G036730 Rw4G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	839
AccB7I	CCANNNNNTGG	2 cut(s)	338, 740
AccIII	TCCGGA	1 cut(s)	490
AclWI	GGATC	1 cut(s)	777
AcoI	YGGCCR	2 cut(s)	65, 731
AcsI	RAATTY	4 cut(s)	577, 617, 776, 909
AfaI	GTAC	2 cut(s)	291, 524
AfiI	CCNNNNNNNGG	2 cut(s)	338, 740
AgsI	TTSAA	6 cut(s)	207, 241, 446, 540, 686, 781
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	67, 331
AleI	CACNNNNGTG	1 cut(s)	285
AloI	GAACNNNNNNTCC	2 cut(s)	737, 769
AluBI	AGCT	6 cut(s)	123, 145, 408, 457, 681, 807
AluI	AGCT	6 cut(s)	123, 145, 408, 457, 681, 807
AlwI	GGATC	1 cut(s)	777
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	2 cut(s)	65, 731
ApeKI	GCWGC	3 cut(s)	57, 661, 869
ApoI	RAATTY	4 cut(s)	577, 617, 776, 909
AspS9I	GGNCC	3 cut(s)	245, 794, 855
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	272, 332
AvaII	GGWCC	3 cut(s)	245, 794, 855
BalI	TGGCCA	2 cut(s)	67, 733
BanI	GGYRCC	1 cut(s)	839
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	44, 673, 856
BccI	CCATC	4 cut(s)	20, 24, 375, 827
BciT130I	CCWGG	2 cut(s)	69, 333
BcnI	CCSGG	1 cut(s)	463
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	2 cut(s)	124, 183
BisI	GCNGC	3 cut(s)	58, 662, 870
BlsI	GCNGC	3 cut(s)	59, 663, 871
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	3 cut(s)	69, 333, 463
Bme18I	GGWCC	3 cut(s)	245, 794, 855
BmgT120I	GGNCC	3 cut(s)	245, 794, 855
BmiI	GGNNCC	3 cut(s)	746, 841, 856
BmrFI	CCNGG	3 cut(s)	69, 333, 463
BmsI	GCATC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	878, 910
BpuMI	CCSGG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 740
Bse1I	ACTGG	2 cut(s)	211, 862
Bse8I	GATNNNNATC	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	69, 333
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	4 cut(s)	35, 471, 499, 890
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	338, 740
BseMII	CTCAG	3 cut(s)	461, 730, 876
BseNI	ACTGG	2 cut(s)	211, 862
BseXI	GCAGC	3 cut(s)	44, 673, 856
BshFI	GGCC	2 cut(s)	67, 733
BshNI	GGYRCC	1 cut(s)	839
BsiSI	CCGG	4 cut(s)	254, 462, 491, 843
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	338, 740
BsmFI	GGGAC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	67, 733
Bsp13I	TCCGGA	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	382, 769
BspANI	GGCC	2 cut(s)	67, 733
BspCNI	CTCAG	3 cut(s)	462, 729, 877
BspEI	TCCGGA	1 cut(s)	490
BspLI	GGNNCC	3 cut(s)	746, 841, 856
BspPI	GGATC	1 cut(s)	777
BspT107I	GGYRCC	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	211, 862
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	2 cut(s)	382, 769
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	69, 333
Bst4CI	ACNGT	2 cut(s)	522, 785
Bst6I	CTCTTC	3 cut(s)	52, 91, 255
BstC8I	GCNNGC	2 cut(s)	696, 901
BstDEI	CTNAG	4 cut(s)	409, 470, 716, 885
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	4 cut(s)	35, 471, 499, 890
BstKTI	GATC	2 cut(s)	385, 772
BstMBI	GATC	2 cut(s)	382, 769
BstNI	CCWGG	2 cut(s)	69, 333
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	67, 331, 461
BstSFI	CTRYAG	2 cut(s)	124, 183
BstV1I	GCAGC	3 cut(s)	44, 673, 856
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	2 cut(s)	509, 836
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	67, 733
BtsCI	GGATG	4 cut(s)	35, 471, 499, 890
BtsIMutI	CAGTG	2 cut(s)	556, 724
Cac8I	GCNNGC	2 cut(s)	696, 901
Cfr13I	GGNCC	3 cut(s)	245, 794, 855
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	290, 523
CviAII	CATG	4 cut(s)	359, 595, 761, 823
CviQI	GTAC	2 cut(s)	290, 523
DdeI	CTNAG	4 cut(s)	409, 470, 716, 885
DpnI	GATC	2 cut(s)	384, 771
DpnII	GATC	2 cut(s)	382, 769
EaeI	YGGCCR	2 cut(s)	65, 731
Eam1104I	CTCTTC	3 cut(s)	52, 91, 255
EarI	CTCTTC	3 cut(s)	52, 91, 255
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	245, 794, 855
Eco91I	GGTNACC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	67, 331
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	4 cut(s)	362, 598, 764, 826
FaiI	YATR	6 cut(s)	126, 185, 360, 596, 762, 824
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	4 cut(s)	358, 594, 760, 822
Fnu4HI	GCNGC	3 cut(s)	58, 662, 870
FokI	GGATG	4 cut(s)	42, 478, 506, 877
Fsp4HI	GCNGC	3 cut(s)	58, 662, 870
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	3 cut(s)	58, 662, 870
HaeIII	GGCC	2 cut(s)	67, 733
HapII	CCGG	4 cut(s)	254, 462, 491, 843
Hin1II	CATG	4 cut(s)	362, 598, 764, 826
HindIII	AAGCTT	2 cut(s)	406, 455
HinfI	GANTC	2 cut(s)	110, 887
HpaII	CCGG	4 cut(s)	254, 462, 491, 843
HphI	GGTGA	2 cut(s)	272, 332
Hpy166II	GTNNAC	2 cut(s)	290, 307
Hpy188I	TCNGA	7 cut(s)	52, 229, 403, 558, 774, 877, 886
Hpy188III	TCNNGA	4 cut(s)	116, 491, 631, 792
Hpy8I	GTNNAC	2 cut(s)	290, 307
HpyAV	CCTTC	4 cut(s)	213, 293, 618, 767
HpyCH4III	ACNGT	2 cut(s)	522, 785
HpyCH4V	TGCA	5 cut(s)	60, 81, 358, 661, 903
HpyF3I	CTNAG	4 cut(s)	409, 470, 716, 885
Hsp92II	CATG	4 cut(s)	362, 598, 764, 826
Kpn2I	TCCGGA	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	382, 769
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	3 cut(s)	44, 673, 856
LweI	GCATC	1 cut(s)	456
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	320, 449
MalI	GATC	2 cut(s)	384, 771
MboI	GATC	2 cut(s)	382, 769
MboII	GAAGA	6 cut(s)	39, 78, 84, 168, 242, 525
MflI	RGATCY	1 cut(s)	769
MlsI	TGGCCA	2 cut(s)	67, 733
MluCI	AATT	8 cut(s)	271, 343, 544, 577, 617, 776, 798, 909
MluNI	TGGCCA	2 cut(s)	67, 733
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	2 cut(s)	120, 882
MnlI	CCTC	5 cut(s)	258, 335, 374, 633, 904
Mox20I	TGGCCA	2 cut(s)	67, 733
MroI	TCCGGA	1 cut(s)	490
MscI	TGGCCA	2 cut(s)	67, 733
MseI	TTAA	2 cut(s)	135, 600
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	2 cut(s)	67, 733
MspI	CCGG	4 cut(s)	254, 462, 491, 843
MspR9I	CCNGG	3 cut(s)	69, 333, 463
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	2 cut(s)	69, 333
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	2 cut(s)	382, 769
NlaIII	CATG	4 cut(s)	362, 598, 764, 826
NlaIV	GGNNCC	3 cut(s)	746, 841, 856
NmuCI	GTSAC	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	285
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	110
PflMI	CCANNNNNTGG	2 cut(s)	338, 740
PfoI	TCCNGGA	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	59, 663, 871
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
Psp6I	CCWGG	2 cut(s)	67, 331
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	2 cut(s)	67, 331
PspN4I	GGNNCC	3 cut(s)	746, 841, 856
PspPI	GGNCC	3 cut(s)	245, 794, 855
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	2 cut(s)	291, 524
RsaNI	GTAC	2 cut(s)	290, 523
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	135, 600
SatI	GCNGC	3 cut(s)	58, 662, 870
Sau3AI	GATC	2 cut(s)	382, 769
Sau96I	GGNCC	3 cut(s)	245, 794, 855
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	3 cut(s)	69, 333, 463
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	2 cut(s)	124, 183
SinI	GGWCC	3 cut(s)	245, 794, 855
SmiMI	CAYNNNNRTG	1 cut(s)	285
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	8 cut(s)	271, 343, 544, 577, 617, 776, 798, 909
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	67, 331, 461
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	522, 785
TaqI	TCGA	1 cut(s)	677
TasI	AATT	8 cut(s)	271, 343, 544, 577, 617, 776, 798, 909
TatI	WGTACW	2 cut(s)	289, 522
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	135, 600
Tru9I	TTAA	2 cut(s)	135, 600
TscAI	CASTG	2 cut(s)	556, 724
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	3 cut(s)	57, 661, 869
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	78, 618, 749
TspRI	CASTG	2 cut(s)	556, 724
Van91I	CCANNNNNTGG	2 cut(s)	338, 740
VpaK11BI	GGWCC	3 cut(s)	245, 794, 855
XapI	RAATTY	4 cut(s)	577, 617, 776, 909
XspI	CTAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.