Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010029

Physical Location & Seq

Genomic Coordinates Forward (+)

22211559 .. 22215441

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGGAAGAAACTATTTGACTGGCAATGTCCCTCCTGAAATTGGTCATATCAAAAACTTGCAGATAGCCTTAAATTTGAGCTTCAACCATCTCCGTGGGCCTCTTCCCCCTGAATTAGGGAAACTTGACAAGCTTGTTTCTCTTGATGTCTCCAATAATCAGCTTTCCGATATTATTCCATCTGCATTTAAGGGAATGCTGAGCTTGATAGAGGTTAATTTTTCGAACAATCTATTTACTGGTCCAGTACCGACATTCATACCATTTCAGAAAAGTCCAAATTCAAGTTTTCTGGGAAATAAGGGGCTATGTGGAGAGCCACTGAGCTCCTCATGTGGAAGTTCTTACAGTGCTGACCATGATAATTACCATCACAGGGTTTCTTACAGAATCATACTCGCAGTTATTGGTTCTGGTTTGGCAATTTTTGTCTCTGTAACTGTAGTTGTTCTGCTGTTTATGATGAGAGAGAAGCAGGAGAAGGAAGAGAGAGCTGCTGAAACTGAAGATGAAGGAGCCAACAATGTACCAGTGATAGTAGCAGGGAGTGTTTTTGTTGAGAATCTCAGACAAGCAATTGATCTTGATTGTGCTGTTAAAGCAACATTGAAGGATTCAAACAAGGTCAGTACTGGGACTTTTAGCACTGTTTACAAGGCTGTAATGCCATCTGGGCTGATTGTATCAGTGAAGCGACTAAAATCCATGGACAGGACAATAGTTCATCACCAGAACAAGATGATTAGAGAGCTTGAAAGGCTGAGTAAACTCTGCCATGATAACCTAGTGCGCCCTATTGGATTTGTTATTTATGAAGATGTTGCTCTTTTGCTGCATCATTACTTGCCCTATGGGACATTATGTCAGCTTCTTCATGAATCTTCCAAGAAACCTGAATATGAACCCGACTGGCCAACAAGACTTTCTATTGCCATTGGAGTAGCAGAAGGGTTGGCTTTTCTTCATAATGTGGCAATTATCCACCTTGATATATCTTCTGGCAATGTTCTTTTGGATGGTAACTTCAAGCCTCTGGTTGGAGAGATTGAGATTTCAAAGCTGTTGGATCCATCCAGAGGCACAGCCAGTATTAGTGCAGTTGCTGGATCCTTTGGTTACATTCCTCCAGAATATGCGTATACAATGCAAGTTACAGCTCCTGGAAATGTTTATAGCTATGGCGTTATTTTGCTGGAGATCCTTACTACAAAATTGCCAGTAGATGAGGCCTTCGATGAGGGAGTAGATTTGGTGAAGTGGGTGCATAATGCTCCTATGAGAGGGGAAACCCCAGAGCAGATTCTTGACGCAAGGCTCAGCACGGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCAGCACTGAAGATTGCATTACTCTGCACTGACAACATCCCGGCCAAACGGCCAAAAATGAAGAAGGTTGTGGAAATGCTTCAAGAAATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

482

Amino Acids

53.07

Weight (kDa)

6.41

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	206 - 477	3e-27	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	206 - 412	1.5e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41820
fragaria_vesca	FvH4_6g23640 FvH4_6g23640 FvH4_6g23640
malus_domestica	MD12G1076900.v1.1 MD14G1071100.v1.1
prunus_persica	Prupe.7G063100_v2.0.a1
pyrus_communis	pycom12g06280 pycom14g06030
rosa_chinensis	RchiOBHm_Chr3g0482081
rosa_laevigata	RLG00000023377
rosa_multiflora	Rmu_sc0001738.1_g000026
rosa_roxburghii	Rroxscaffold_6G00399750 Rroxscaffold_6G00400100
rosa_rugosa	Rorug03G0194500 Rorug03G0194600
rosa_samantha	Rh3AG245800 Rh3BG280800 Rh3CG277000 Rh3DG273100
rosa_wichuraiana	Rw3G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1139
AclWI	GGATC	5 cut(s)	1061, 1074, 1101, 1114, 1192
AcoI	YGGCCR	3 cut(s)	911, 1395, 1403
AcsI	RAATTY	2 cut(s)	73, 280
AcuI	CTGAAG	2 cut(s)	525, 1382
AfaI	GTAC	3 cut(s)	249, 528, 631
AfiI	CCNNNNNNNGG	8 cut(s)	41, 116, 376, 711, 1037, 1076, 1280, 1335
AgsI	TTSAA	8 cut(s)	85, 285, 610, 618, 755, 1027, 1056, 1436
AhdI	GACNNNNNGTC	1 cut(s)	861
AjnI	CCWGG	1 cut(s)	1159
AjuI	GAANNNNNNNTTGG	2 cut(s)	907, 939
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	154, 436
AlwI	GGATC	5 cut(s)	1061, 1074, 1101, 1114, 1192
AlwNI	CAGNNNCTG	2 cut(s)	1103, 1160
AoxI	GGCC	5 cut(s)	98, 911, 1227, 1395, 1403
ApeKI	GCWGC	3 cut(s)	494, 832, 1355
ApoI	RAATTY	2 cut(s)	73, 280
Asp700I	GAANNNNTTC	1 cut(s)	1431
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	2 cut(s)	98, 242
AsuC2I	CCSGG	1 cut(s)	1394
AsuHPI	GGTGA	2 cut(s)	719, 1264
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	913
BamHI	GGATCC	2 cut(s)	1066, 1106
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	3 cut(s)	481, 819, 1367
BccI	CCATC	6 cut(s)	96, 187, 378, 676, 1010, 1078
BceAI	ACGGC	1 cut(s)	1418
BciT130I	CCWGG	1 cut(s)	1161
BcnI	CCSGG	1 cut(s)	1394
BcoDI	GTCTC	2 cut(s)	154, 436
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	1 cut(s)	441
BglI	GCCNNNNNGGC	1 cut(s)	673
BisI	GCNGC	3 cut(s)	495, 833, 1356
BlpI	GCTNAGC	2 cut(s)	200, 1316
BlsI	GCNGC	3 cut(s)	496, 834, 1357
BmcAI	AGTACT	1 cut(s)	631
Bme1390I	CCNGG	2 cut(s)	1161, 1394
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	861
BmgT120I	GGNCC	2 cut(s)	98, 242
BmiI	GGNNCC	3 cut(s)	517, 1068, 1108
BmrFI	CCNGG	2 cut(s)	1161, 1394
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	642
BpmI	CTGGAG	2 cut(s)	1110, 1214
Bpu1102I	GCTNAGC	2 cut(s)	200, 1316
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	1394
BsaJI	CCNNGG	2 cut(s)	94, 705
Bsc4I	CCNNNNNNNGG	8 cut(s)	41, 116, 376, 711, 1037, 1076, 1280, 1335
Bse1I	ACTGG	8 cut(s)	25, 244, 245, 530, 637, 914, 1086, 1217
Bse3DI	GCAATG	2 cut(s)	31, 1009
BseBI	CCWGG	1 cut(s)	1161
BseDI	CCNNGG	2 cut(s)	94, 705
BseGI	GGATG	3 cut(s)	1021, 1070, 1389
BseLI	CCNNNNNNNGG	8 cut(s)	41, 116, 376, 711, 1037, 1076, 1280, 1335
BseMI	GCAATG	2 cut(s)	31, 1009
BseMII	CTCAG	5 cut(s)	191, 314, 580, 752, 1330
BseNI	ACTGG	8 cut(s)	25, 244, 245, 530, 637, 914, 1086, 1217
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	3 cut(s)	481, 819, 1367
BsgI	GTGCAG	2 cut(s)	1116, 1363
BshFI	GGCC	5 cut(s)	100, 913, 1229, 1397, 1405
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	1394
BslFI	GGGAC	3 cut(s)	14, 649, 868
BslI	CCNNNNNNNGG	8 cut(s)	41, 116, 376, 711, 1037, 1076, 1280, 1335
BsmAI	GTCTC	2 cut(s)	154, 436
BsmFI	GGGAC	3 cut(s)	14, 649, 868
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	5 cut(s)	100, 913, 1229, 1397, 1405
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	580, 1066, 1106, 1197
Bsp1720I	GCTNAGC	2 cut(s)	200, 1316
Bsp19I	CCATGG	1 cut(s)	705
BspANI	GGCC	5 cut(s)	100, 913, 1229, 1397, 1405
BspCNI	CTCAG	5 cut(s)	192, 315, 579, 753, 1329
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	3 cut(s)	517, 1068, 1108
BspPI	GGATC	5 cut(s)	1061, 1074, 1101, 1114, 1192
BspT104I	TTCGAA	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	31, 1009
BsrI	ACTGG	8 cut(s)	25, 244, 245, 530, 637, 914, 1086, 1217
BssECI	CCNNGG	2 cut(s)	94, 705
BssMI	GATC	4 cut(s)	580, 1066, 1106, 1197
BssNAI	GTATAC	1 cut(s)	1140
BssT1I	CCWWGG	1 cut(s)	705
Bst1107I	GTATAC	1 cut(s)	1140
Bst2UI	CCWGG	1 cut(s)	1161
Bst4CI	ACNGT	4 cut(s)	350, 442, 649, 1324
Bst6I	CTCTTC	2 cut(s)	108, 480
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	1353
BstDEI	CTNAG	5 cut(s)	200, 323, 566, 761, 1316
BstDSI	CCRYGG	2 cut(s)	94, 705
BstENI	CCTNNNNNAGG	2 cut(s)	114, 1278
BstF5I	GGATG	3 cut(s)	1021, 1070, 1389
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	4 cut(s)	583, 1069, 1109, 1200
BstMAI	GTCTC	2 cut(s)	154, 436
BstMBI	GATC	4 cut(s)	580, 1066, 1106, 1197
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 673, 757
BstNI	CCWGG	1 cut(s)	1161
BstSCI	CCNGG	2 cut(s)	1159, 1392
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	481, 819, 1367
BstX2I	RGATCY	3 cut(s)	1066, 1106, 1197
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	3 cut(s)	1066, 1106, 1197
BstZ17I	GTATAC	1 cut(s)	1140
BsuRI	GGCC	5 cut(s)	100, 913, 1229, 1397, 1405
BtgI	CCRYGG	2 cut(s)	94, 705
BtsCI	GGATG	3 cut(s)	1021, 1070, 1389
BtsIMutI	CAGTG	7 cut(s)	320, 355, 537, 645, 693, 1358, 1380
Cac8I	GCNNGC	1 cut(s)	1353
CaiI	CAGNNNCTG	2 cut(s)	1103, 1160
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	98, 242
CseI	GACGC	1 cut(s)	1316
Csp6I	GTAC	3 cut(s)	248, 527, 630
CviAII	CATG	5 cut(s)	333, 359, 706, 776, 875
CviQI	GTAC	3 cut(s)	248, 527, 630
DdeI	CTNAG	5 cut(s)	200, 323, 566, 761, 1316
DpnI	GATC	4 cut(s)	582, 1068, 1108, 1199
DpnII	GATC	4 cut(s)	580, 1066, 1106, 1197
DriI	GACNNNNNGTC	1 cut(s)	861
EaeI	YGGCCR	3 cut(s)	911, 1395, 1403
Eam1104I	CTCTTC	2 cut(s)	108, 480
Eam1105I	GACNNNNNGTC	1 cut(s)	861
EarI	CTCTTC	2 cut(s)	108, 480
Ecl136II	GAGCTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	1229
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	525, 1382
EcoICRI	GAGCTC	1 cut(s)	327
EcoNI	CCTNNNNNAGG	2 cut(s)	114, 1278
EcoRII	CCWGG	1 cut(s)	1159
EcoT14I	CCWWGG	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	5 cut(s)	336, 362, 709, 779, 878
FalI	AAGNNNNNCTT	2 cut(s)	1335, 1367
FaqI	GGGAC	3 cut(s)	14, 649, 868
FatI	CATG	5 cut(s)	332, 358, 705, 775, 874
FblI	GTMKAC	1 cut(s)	1139
Fnu4HI	GCNGC	3 cut(s)	495, 833, 1356
FokI	GGATG	3 cut(s)	1028, 1057, 1376
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	495, 833, 1356
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	3 cut(s)	495, 833, 1356
GsuI	CTGGAG	2 cut(s)	1110, 1214
HaeIII	GGCC	5 cut(s)	100, 913, 1229, 1397, 1405
HapII	CCGG	1 cut(s)	1394
HgaI	GACGC	1 cut(s)	1316
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	5 cut(s)	336, 362, 709, 779, 878
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	5 cut(s)	390, 562, 614, 878, 1300
HpaII	CCGG	1 cut(s)	1394
HphI	GGTGA	2 cut(s)	719, 1264
Hpy166II	GTNNAC	3 cut(s)	652, 767, 1140
Hpy188I	TCNGA	3 cut(s)	169, 270, 569
Hpy188III	TCNNGA	8 cut(s)	35, 143, 584, 875, 1074, 1127, 1304, 1436
Hpy8I	GTNNAC	3 cut(s)	652, 767, 1140
HpyAV	CCTTC	6 cut(s)	475, 506, 604, 941, 1240, 1411
HpyCH4III	ACNGT	4 cut(s)	350, 442, 649, 1324
HpyCH4V	TGCA	9 cut(s)	61, 185, 835, 1097, 1147, 1264, 1355, 1370, 1380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 673, 757
HpyF3I	CTNAG	5 cut(s)	200, 323, 566, 761, 1316
Hsp92II	CATG	5 cut(s)	336, 362, 709, 779, 878
HspAI	GCGC	1 cut(s)	790
Kzo9I	GATC	4 cut(s)	580, 1066, 1106, 1197
LmnI	GCTCC	4 cut(s)	332, 515, 1162, 1276
Lsp1109I	GCAGC	3 cut(s)	481, 819, 1367
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	1 cut(s)	785
MaeIII	GTNAC	4 cut(s)	436, 1019, 1115, 1150
MalI	GATC	4 cut(s)	582, 1068, 1108, 1199
MboI	GATC	4 cut(s)	580, 1066, 1106, 1197
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	3 cut(s)	1066, 1106, 1197
MhlI	GDGCHC	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	913
MluNI	TGGCCA	1 cut(s)	913
MmeI	TCCRAC	3 cut(s)	1018, 1044, 1316
Mox20I	TGGCCA	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	1431
MscI	TGGCCA	1 cut(s)	913
MseI	TTAA	4 cut(s)	71, 189, 216, 597
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	913
MspI	CCGG	1 cut(s)	1394
MspR9I	CCNGG	2 cut(s)	1161, 1394
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	1161
MwoI	GCNNNNNNNGC	3 cut(s)	599, 673, 757
NciI	CCSGG	1 cut(s)	1394
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	4 cut(s)	580, 1066, 1106, 1197
NlaIII	CATG	5 cut(s)	336, 362, 709, 779, 878
NlaIV	GGNNCC	3 cut(s)	517, 1068, 1108
NspV	TTCGAA	1 cut(s)	224
PagI	TCATGA	1 cut(s)	874
PceI	AGGCCT	1 cut(s)	1229
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	1431
PfeI	GAWTC	5 cut(s)	390, 562, 614, 878, 1300
PfoI	TCCNGGA	1 cut(s)	1159
PkrI	GCNGC	3 cut(s)	496, 834, 1357
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	1159
PspGI	CCWGG	1 cut(s)	1159
PspN4I	GGNNCC	3 cut(s)	517, 1068, 1108
PspPI	GGNCC	2 cut(s)	98, 242
PstNI	CAGNNNCTG	2 cut(s)	1103, 1160
PsuI	RGATCY	3 cut(s)	1066, 1106, 1197
RsaI	GTAC	3 cut(s)	249, 528, 631
RsaNI	GTAC	3 cut(s)	248, 527, 630
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	71, 189, 216, 597
SatI	GCNGC	3 cut(s)	495, 833, 1356
Sau3AI	GATC	4 cut(s)	580, 1066, 1106, 1197
Sau96I	GGNCC	2 cut(s)	98, 242
ScaI	AGTACT	1 cut(s)	631
ScrFI	CCNGG	2 cut(s)	1161, 1394
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	1 cut(s)	441
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	93
SseBI	AGGCCT	1 cut(s)	1229
SspMI	CTAG	1 cut(s)	785
SstI	GAGCTC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	1229
StyD4I	CCNGG	2 cut(s)	1159, 1392
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	4 cut(s)	350, 442, 649, 1324
TaqI	TCGA	2 cut(s)	224, 1233
TatI	WGTACW	1 cut(s)	629
TfiI	GAWTC	5 cut(s)	390, 562, 614, 878, 1300
Tru1I	TTAA	4 cut(s)	71, 189, 216, 597
Tru9I	TTAA	4 cut(s)	71, 189, 216, 597
TscAI	CASTG	7 cut(s)	327, 355, 537, 652, 693, 1365, 1387
TseI	GCWGC	3 cut(s)	494, 832, 1355
TspDTI	ATGAA	9 cut(s)	247, 525, 713, 828, 863, 891, 915, 953, 1427
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	7 cut(s)	327, 355, 537, 652, 693, 1365, 1387
VpaK11BI	GGWCC	1 cut(s)	242
XagI	CCTNNNNNAGG	2 cut(s)	114, 1278
XapI	RAATTY	2 cut(s)	73, 280
XmiI	GTMKAC	1 cut(s)	1139
XmnI	GAANNNNTTC	1 cut(s)	1431
XspI	CTAG	1 cut(s)	785
ZrmI	AGTACT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.