Rorug03G0194500

Leucine-rich repeat receptor-like tyrosine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010029
Physical Location & Seq
Forward (+)
17115408 .. 17120385
4978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0194500.1

Sequence Viewer

Length: 819 bp
ATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGTGGAGGTGATTCAACACCTGAAGATGGTGATCAGGCCATATATCATTGCACTGTTAGAACATTGGATGGAGTTATTGTTGAATCTTCAAGATCAGAATTTGGTGGTTCAGCTTGGGATGAACTCAAGCATACTAGGCAAGCCATTGGATCCCTGGGTAAGATCCACGTGATTGCTGCCAAGAAGTTGTCAGCGAAAGGTGAGCCAGAACAGGAGGAGGTGTCCGAGCTGCATGTTCTATGTCGAAAAGTCGGTTGGTTGCTCCTACATGAAGTGCAGATTCGCGGGCTGGTAAATGTTGACTTTGCTGATATAAGGGCTATAATGGCGAATGCAGTTTCTTCATTGATGGGGATAGGATCTGCAACTGGGAAGACAAGGGCAAGAGATGCTGCGTTAAATGCCATTCAATCACCTTTATTAAATATTGATATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACTGTATGAGGTAAATGCTGCAGCCGAGGTTATATATGATCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAATGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGACATTACCCTTGGAATCAATCAAAGACCTTCCTCCTTCTCAGATGGTAGTTCAGTTGAGATTCAAGATTTCTTGAAGAAGAAAGGACGCTCACGTTATCCAAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

272

Amino Acids

29.1

Weight (kDa)

5.6

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsZ_C PF12327 130 - 222 6e-30 FtsZ family, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 330
AciI CCGC 1 cut(s) 330
AclWI GGATC 6 cut(s) 189, 202, 202, 412, 572, 608
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 2 cut(s) 143, 589
AcuI CTGAAG 1 cut(s) 87
AcvI CACGTG 1 cut(s) 214
AdeI CACNNNGTG 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 50, 71
AgsI TTSAA 7 cut(s) 60, 128, 135, 455, 664, 773, 784
AjnI CCWGG 3 cut(s) 43, 198, 696
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
AluBI AGCT 3 cut(s) 21, 158, 274
AluI AGCT 3 cut(s) 21, 158, 274
Alw26I GTCTC 1 cut(s) 702
AlwI GGATC 6 cut(s) 189, 202, 202, 412, 572, 608
AoxI GGCC 3 cut(s) 12, 81, 689
ApeKI GCWGC 5 cut(s) 221, 274, 437, 548, 551
ApoI RAATTY 2 cut(s) 143, 589
AsuHPI GGTGA 4 cut(s) 65, 86, 257, 450
BamHI GGATCC 1 cut(s) 194
BbrPI CACGTG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 425
BbvI GCAGC 5 cut(s) 208, 261, 424, 535, 563
BccI CCATC 6 cut(s) 65, 107, 388, 625, 677, 746
BciT130I CCWGG 3 cut(s) 45, 200, 698
BclI TGATCA 2 cut(s) 36, 76
BcoDI GTCTC 1 cut(s) 702
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 549
BisI GCNGC 5 cut(s) 222, 275, 438, 549, 552
BlsI GCNGC 5 cut(s) 223, 276, 439, 550, 553
Bme1390I CCNGG 3 cut(s) 45, 200, 698
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 3 cut(s) 45, 200, 698
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 424, 648
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 198, 199, 555, 718
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 71
Bse1I ACTGG 4 cut(s) 418, 496, 517, 661
Bse3DI GCAATG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 3 cut(s) 45, 200, 698
BseDI CCNNGG 4 cut(s) 198, 199, 555, 718
BseGI GGATG 2 cut(s) 118, 169
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 50, 71
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 637, 762
BseNI ACTGG 4 cut(s) 418, 496, 517, 661
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 5 cut(s) 208, 261, 424, 535, 563
BsgI GTGCAG 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 3 cut(s) 14, 83, 691
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 2 cut(s) 50, 71
BsmAI GTCTC 1 cut(s) 702
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 3 cut(s) 14, 83, 691
Bsp143I GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
BspACI CCGC 1 cut(s) 330
BspANI GGCC 3 cut(s) 14, 83, 691
BspCNI CTCAG 2 cut(s) 636, 761
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 6 cut(s) 189, 202, 202, 412, 572, 608
BsrDI GCAATG 1 cut(s) 91
BsrI ACTGG 4 cut(s) 418, 496, 517, 661
BssECI CCNNGG 4 cut(s) 198, 199, 555, 718
BssMI GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 3 cut(s) 45, 200, 698
Bst4CI ACNGT 2 cut(s) 100, 534
BstAPI GCANNNNNTGC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 186, 332
BstDEI CTNAG 2 cut(s) 623, 748
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 118, 169
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 9 cut(s) 39, 79, 140, 197, 210, 407, 571, 580, 616
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
BstMWI GCNNNNNNNGC 4 cut(s) 181, 371, 434, 446
BstNI CCWGG 3 cut(s) 45, 200, 698
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 43, 198, 696
BstSFI CTRYAG 1 cut(s) 549
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 5 cut(s) 208, 261, 424, 535, 563
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 4 cut(s) 194, 207, 404, 613
BstYI RGATCY 4 cut(s) 194, 207, 404, 613
BsuRI GGCC 3 cut(s) 14, 83, 691
BtsCI GGATG 2 cut(s) 118, 169
BtsI GCAGTG 2 cut(s) 39, 612
BtsIMutI CAGTG 5 cut(s) 39, 96, 530, 612, 631
Cac8I GCNNGC 2 cut(s) 186, 332
CseI GACGC 1 cut(s) 804
CsiI ACCWGGT 1 cut(s) 43
CviAII CATG 2 cut(s) 278, 314
DdeI CTNAG 2 cut(s) 623, 748
DpnI GATC 9 cut(s) 38, 78, 139, 196, 209, 406, 570, 579, 615
DpnII GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
DraIII CACNNNGTG 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 3 cut(s) 43, 198, 696
EcoT14I CCWWGG 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 2 cut(s) 281, 317
FatI CATG 2 cut(s) 277, 313
FauI CCCGC 1 cut(s) 323
FbaI TGATCA 2 cut(s) 36, 76
Fnu4HI GCNGC 5 cut(s) 222, 275, 438, 549, 552
FokI GGATG 2 cut(s) 125, 176
Fsp4HI GCNGC 5 cut(s) 222, 275, 438, 549, 552
FspBI CTAG 1 cut(s) 180
GluI GCNGC 5 cut(s) 222, 275, 438, 549, 552
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 3 cut(s) 14, 83, 691
HapII CCGG 1 cut(s) 15
HgaI GACGC 1 cut(s) 804
Hin1II CATG 2 cut(s) 281, 317
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 6 cut(s) 56, 128, 325, 660, 723, 769
HpaII CCGG 1 cut(s) 15
HphI GGTGA 4 cut(s) 65, 86, 257, 450
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 4 cut(s) 41, 142, 271, 751
Hpy188III TCNNGA 4 cut(s) 135, 502, 773, 781
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 747, 754
HpyCH4III ACNGT 2 cut(s) 100, 534
HpyCH4IV ACGT 2 cut(s) 213, 802
HpyCH4V TGCA 6 cut(s) 96, 277, 322, 380, 410, 551
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 371, 434, 446
HpyF3I CTNAG 2 cut(s) 623, 748
HpySE526I ACGT 2 cut(s) 213, 802
Hsp92II CATG 2 cut(s) 281, 317
Ksp22I TGATCA 2 cut(s) 36, 76
Kzo9I GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
LmnI GCTCC 2 cut(s) 312, 602
Lsp1109I GCAGC 5 cut(s) 208, 261, 424, 535, 563
LweI GCATC 2 cut(s) 424, 648
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 213, 802
MaeIII GTNAC 1 cut(s) 607
MalI GATC 9 cut(s) 38, 78, 139, 196, 209, 406, 570, 579, 615
MboI GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
MboII GAAGA 7 cut(s) 80, 123, 378, 430, 686, 796, 799
MflI RGATCY 4 cut(s) 194, 207, 404, 613
MluCI AATT 4 cut(s) 143, 495, 589, 648
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 8 cut(s) 44, 253, 256, 477, 532, 550, 681, 751
MseI TTAA 3 cut(s) 443, 467, 593
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 3 cut(s) 45, 200, 698
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 3 cut(s) 45, 200, 698
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 181, 371, 434, 446
NdeII GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
NlaIII CATG 2 cut(s) 281, 317
NlaIV GGNNCC 1 cut(s) 196
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 1 cut(s) 607
NspI RCATGY 1 cut(s) 281
PasI CCCWGGG 1 cut(s) 199
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 6 cut(s) 56, 128, 325, 660, 723, 769
PkrI GCNGC 5 cut(s) 223, 276, 439, 550, 553
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 43, 198, 696
PspCI CACGTG 1 cut(s) 214
PspGI CCWGG 3 cut(s) 43, 198, 696
PspN4I GGNNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 553
PsuI RGATCY 4 cut(s) 194, 207, 404, 613
SaqAI TTAA 3 cut(s) 443, 467, 593
SatI GCNGC 5 cut(s) 222, 275, 438, 549, 552
Sau3AI GATC 9 cut(s) 36, 76, 137, 194, 207, 404, 568, 577, 613
ScrFI CCNGG 3 cut(s) 45, 200, 698
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 2 cut(s) 424, 648
SfcI CTRYAG 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 143, 495, 589, 648
SsiI CCGC 1 cut(s) 330
SspI AATATT 2 cut(s) 472, 597
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 3 cut(s) 43, 198, 696
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 2 cut(s) 100, 534
TaiI ACGT 2 cut(s) 216, 805
TaqI TCGA 1 cut(s) 289
TasI AATT 4 cut(s) 143, 495, 589, 648
TfiI GAWTC 6 cut(s) 56, 128, 325, 660, 723, 769
Tru1I TTAA 3 cut(s) 443, 467, 593
Tru9I TTAA 3 cut(s) 443, 467, 593
TscAI CASTG 5 cut(s) 39, 103, 537, 612, 631
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 5 cut(s) 221, 274, 437, 548, 551
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 5 cut(s) 17, 41, 180, 330, 378
TspRI CASTG 5 cut(s) 39, 103, 537, 612, 631
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 2 cut(s) 143, 589
XceI RCATGY 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.