Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010029

Physical Location & Seq

Genomic Coordinates Forward (+)

17121851 .. 17122843

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0194600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCTGTAATCGGAGAACTTCACAAGCTTGAGATTCTTAGTATGAGAGAAAATGCTCTGAAAGAAATGTCAAGAGAAATAGGACAGTTGACCAATCTAAGGATGCTGGATGTCAGTGCTCAATGTATTCGCACAATTCGATCTAAAGTGATATCAAAGTTGCATAAATTAGAAGAACTGTACATGCAATGTGGATTTTGGGATTGGGTTAGTAAAATTGATGGAGAAGGACAAAAAACTAATATTGGCTTTGATGAAATAGCTGGTTTATCATATTTAAGCACTTTGAAAGTTTGCATATCAGATGCAAATTGCATCCCTAAAAGTGTTGAGGTCGAACCGAATTGGGTTTACTTCGATATTAGTACTTGCCACGGCCATATTTCAGAGAGAATCATTGAGAACTTTCGATCTGATGATTCTGGCCATAATTGTAGATCCTTGAGTCTTAGTAGAACTGATACAACCATAGGAGCCTTTCCGGACTGGTTTGTCAACACTGCGGTAAAGAATACTGAGAGGCTGCGTTATGAAGAATGCAAAGGCTTAAGTAACATTCTTGTGGAATATGACCATGGGAGGTTACATGGACTGAAAGTTCTCTCTGTAATTGGTCGCTGTGAGAGCCTGAAAGAGTTGATGAACGCCATAACATGTGTTCCTGATAAGCCTGTGTTTGAGAACATGGAAGAGTTGCATCTGAAAGAGCTGAATGACCTGGAGGAGTTATGTGTTGGTGAGTTACCACCTGGATCTCTCTGCAGTCTGAAATTATTGGAGGTCCGTCGGTGCTGTAACTTGGGGAATGTACTGTTGCCATCAAAATTATTGCAGAAACTACCAAGTCTGGAAAAACTACTCTGTTCTGATACTAAAGTGGAATATTTGTTTGGATGTGAAGGATTTGAGCCAGATCAAATAAATCTGAGAGAGATGGAGTTACAGGATCTACATGTTGTAAGAGGAATATGTAATGGTCCTGCTCCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

330

Amino Acids

37.39

Weight (kDa)

5.41

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 62	2.6e-06	Leucine-rich repeat region
LRR_RPS2	PF23247	229 - 325	2.2e-09	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41820
fragaria_vesca	FvH4_6g23640 FvH4_6g23640 FvH4_6g23640
malus_domestica	MD12G1076900.v1.1 MD14G1071100.v1.1
prunus_persica	Prupe.7G063100_v2.0.a1
pyrus_communis	pycom12g06280 pycom14g06030
rosa_chinensis	RchiOBHm_Chr3g0482081
rosa_laevigata	RLG00000023377
rosa_multiflora	Rmu_sc0001738.1_g000026
rosa_roxburghii	Rroxscaffold_6G00399750 Rroxscaffold_6G00400100
rosa_rugosa	Rorug03G0194500 Rorug03G0194600
rosa_samantha	Rh3AG245800 Rh3BG280800 Rh3CG277000 Rh3DG273100
rosa_wichuraiana	Rw3G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccIII	TCCGGA	1 cut(s)	481
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	3 cut(s)	432, 760, 954
AcoI	YGGCCR	2 cut(s)	376, 424
AfaI	GTAC	3 cut(s)	182, 367, 810
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflII	CTTAAG	1 cut(s)	547
AflIII	ACRYGT	2 cut(s)	653, 952
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	717, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	873, 905
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	3 cut(s)	28, 263, 709
AluI	AGCT	3 cut(s)	28, 263, 709
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	432, 760, 954
Aor13HI	TCCGGA	1 cut(s)	481
AoxI	GGCC	2 cut(s)	376, 424
ApeKI	GCWGC	1 cut(s)	523
AspS9I	GGNCC	2 cut(s)	781, 977
AsuHPI	GGTGA	1 cut(s)	749
AvaII	GGWCC	2 cut(s)	781, 977
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BalI	TGGCCA	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	3 cut(s)	215, 826, 928
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	719, 750
BfmI	CTRYAG	1 cut(s)	760
BfrI	CTTAAG	1 cut(s)	547
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	719, 750
Bme18I	GGWCC	2 cut(s)	781, 977
BmgT120I	GGNCC	2 cut(s)	781, 977
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	2 cut(s)	719, 750
BmsI	GCATC	4 cut(s)	93, 295, 324, 706
BpmI	CTGGAG	1 cut(s)	740
BpuEI	CTTGAG	2 cut(s)	50, 463
BsaJI	CCNNGG	2 cut(s)	373, 574
BsaWI	WCCGGW	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	194
BseAI	TCCGGA	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	719, 750
BseDI	CCNNGG	2 cut(s)	373, 574
BseGI	GGATG	4 cut(s)	108, 115, 315, 899
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	507, 917
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	510
BshFI	GGCC	2 cut(s)	378, 426
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	378, 426
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	481
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	2 cut(s)	378, 426
BspCNI	CTCAG	2 cut(s)	508, 918
BspEI	TCCGGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	1 cut(s)	764
BspPI	GGATC	3 cut(s)	432, 760, 954
BspTI	CTTAAG	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	373, 574
BssMI	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	719, 750
Bst4CI	ACNGT	3 cut(s)	87, 180, 813
Bst6I	CTCTTC	1 cut(s)	684
BstAFI	CTTAAG	1 cut(s)	547
BstAUI	TGTACA	1 cut(s)	180
BstDEI	CTNAG	5 cut(s)	38, 98, 449, 516, 926
BstDSI	CCRYGG	2 cut(s)	373, 574
BstF5I	GGATG	4 cut(s)	108, 115, 315, 899
BstKTI	GATC	6 cut(s)	143, 413, 440, 755, 916, 949
BstMBI	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
BstMWI	GCNNNNNNNGC	1 cut(s)	624
BstNI	CCWGG	2 cut(s)	719, 750
BstNSI	RCATGY	3 cut(s)	187, 657, 956
BstSCI	CCNGG	2 cut(s)	717, 748
BstSFI	CTRYAG	1 cut(s)	760
BstV1I	GCAGC	1 cut(s)	510
BstX2I	RGATCY	3 cut(s)	437, 752, 946
BstYI	RGATCY	3 cut(s)	437, 752, 946
BsuRI	GGCC	2 cut(s)	378, 426
BtgI	CCRYGG	2 cut(s)	373, 574
BtsCI	GGATG	4 cut(s)	108, 115, 315, 899
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	121, 498
Cfr13I	GGNCC	2 cut(s)	781, 977
Csp6I	GTAC	3 cut(s)	181, 366, 809
CviAII	CATG	6 cut(s)	184, 575, 587, 654, 685, 953
CviQI	GTAC	3 cut(s)	181, 366, 809
DdeI	CTNAG	5 cut(s)	38, 98, 449, 516, 926
DpnI	GATC	6 cut(s)	142, 412, 439, 754, 915, 948
DpnII	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	2 cut(s)	376, 424
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco130I	CCWWGG	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	781, 977
EcoRII	CCWGG	2 cut(s)	717, 748
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	6 cut(s)	187, 578, 590, 657, 688, 956
FatI	CATG	6 cut(s)	183, 574, 586, 653, 684, 952
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	4 cut(s)	115, 122, 302, 906
Fsp4HI	GCNGC	1 cut(s)	524
GluI	GCNGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	740
HaeIII	GGCC	2 cut(s)	378, 426
HapII	CCGG	1 cut(s)	482
Hin1II	CATG	6 cut(s)	187, 578, 590, 657, 688, 956
HincII	GTYRAC	2 cut(s)	90, 496
HindII	GTYRAC	2 cut(s)	90, 496
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	4 cut(s)	34, 393, 419, 445
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	3 cut(s)	90, 352, 496
Hpy188I	TCNGA	9 cut(s)	14, 60, 304, 388, 415, 702, 768, 868, 927
Hpy188III	TCNNGA	4 cut(s)	72, 482, 662, 848
Hpy8I	GTNNAC	3 cut(s)	90, 352, 496
Hpy99I	CGWCG	1 cut(s)	789
HpyAV	CCTTC	2 cut(s)	221, 893
HpyCH4III	ACNGT	3 cut(s)	87, 180, 813
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	9 cut(s)	163, 187, 297, 308, 315, 540, 697, 762, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	624
HpyF3I	CTNAG	5 cut(s)	38, 98, 449, 516, 926
HpySE526I	ACGT	1 cut(s)	988
Hsp92II	CATG	6 cut(s)	187, 578, 590, 657, 688, 956
Kpn2I	TCCGGA	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
LmnI	GCTCC	2 cut(s)	473, 988
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	4 cut(s)	93, 295, 324, 706
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	5 cut(s)	551, 582, 741, 794, 939
MalI	GATC	6 cut(s)	142, 412, 439, 754, 915, 948
MboI	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
MboII	GAAGA	3 cut(s)	185, 545, 701
MflI	RGATCY	3 cut(s)	437, 752, 946
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	426
MluCI	AATT	9 cut(s)	135, 167, 216, 310, 343, 430, 609, 770, 824
MluNI	TGGCCA	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	6 cut(s)	325, 513, 573, 715, 772, 956
Mox20I	TGGCCA	1 cut(s)	426
MroI	TCCGGA	1 cut(s)	481
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	2 cut(s)	278, 548
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	426
MspCI	CTTAAG	1 cut(s)	547
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	719, 750
Mva1269I	GAATGC	1 cut(s)	542
MvaI	CCWGG	2 cut(s)	719, 750
MwoI	GCNNNNNNNGC	1 cut(s)	624
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
NlaIII	CATG	6 cut(s)	187, 578, 590, 657, 688, 956
NlaIV	GGNNCC	1 cut(s)	475
NspI	RCATGY	3 cut(s)	187, 657, 956
PciI	ACATGT	2 cut(s)	653, 952
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PctI	GAATGC	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	34, 393, 419
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PscI	ACATGT	2 cut(s)	653, 952
Psp6I	CCWGG	2 cut(s)	717, 748
PspGI	CCWGG	2 cut(s)	717, 748
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	781, 977
PstI	CTGCAG	1 cut(s)	764
PsuI	RGATCY	3 cut(s)	437, 752, 946
RsaI	GTAC	3 cut(s)	182, 367, 810
RsaNI	GTAC	3 cut(s)	181, 366, 809
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	278, 548
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	6 cut(s)	140, 410, 437, 752, 913, 946
Sau96I	GGNCC	2 cut(s)	781, 977
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	719, 750
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	9 cut(s)	30, 265, 336, 584, 711, 720, 751, 783, 991
SfaNI	GCATC	4 cut(s)	93, 295, 324, 706
SfcI	CTRYAG	1 cut(s)	760
SinI	GGWCC	2 cut(s)	781, 977
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	3 cut(s)	29, 442, 547
SmoI	CTYRAG	3 cut(s)	29, 442, 547
Sse9I	AATT	9 cut(s)	135, 167, 216, 310, 343, 430, 609, 770, 824
SsiI	CCGC	1 cut(s)	503
SspI	AATATT	2 cut(s)	244, 884
StyD4I	CCNGG	2 cut(s)	717, 748
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	87, 180, 813
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	4 cut(s)	139, 336, 357, 409
TasI	AATT	9 cut(s)	135, 167, 216, 310, 343, 430, 609, 770, 824
TatI	WGTACW	3 cut(s)	180, 365, 808
TfiI	GAWTC	3 cut(s)	34, 393, 419
Tru1I	TTAA	2 cut(s)	278, 548
Tru9I	TTAA	2 cut(s)	278, 548
TscAI	CASTG	2 cut(s)	121, 505
TseI	GCWGC	1 cut(s)	523
TspDTI	ATGAA	3 cut(s)	270, 546, 656
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	2 cut(s)	121, 505
Vha464I	CTTAAG	1 cut(s)	547
VpaK11BI	GGWCC	2 cut(s)	781, 977
XceI	RCATGY	3 cut(s)	187, 657, 956
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.