Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011633

Physical Location & Seq

Genomic Coordinates Forward (+)

27159863 .. 27160708

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGGAACACATGTGTCGGACCAAATCTTGGCAATGGTTTCATGCAATCCGTTACTGATGCCATTTGGCGAACCCGGCCACCGGAGGACCGGCTTCCTCCTCCAAATGAAGAAGGCAGTAGCAAAAATGACTCAAATTCGAATCCTGGTCCGTCATCCAAAGGTGGCTCTCAGGCTGATCCTAAACCTCCTGATGAGGCTCCTCCTCCAGTCCACAACAATCCCCCTGAGCCTGTGAAAATTGCTAATGATCAACCTCCGAAAGCGGAACCAACAGGAGTGAAGGAAGAGAACAGCAAGGCCCAGGAGGCCGAGAAAGCCAAGAAAGCTGCTCATATGAAGAGGGTTTCTTCTGTTGGACTGCAAATAGACTCGGTGTTAGGAAGGAAGACTGGCAATATCAAGGATCTTTATAGTTTGGGGAGGAAGCTTGGACAAGGCCAATTTGGGACTACCTTTCTTTGTGTGGAGAAGAGAACCAATAAGGAGTTTGCATGCAAGTCAATTGCAAAGAGGAAGCTGACTACGCAAGAGGATGTGGAAGATGTTAGGAGGGAAATCCAGATAATGCATCACTTGGCAGGACATCCCAACGTGATACAAATCGTTGGTGCTCATGAGGACGCTGTGGCGGTTCATGTTATAATGGAACTTTGCGCAGGTGGCGAGCTTTTCGATAGGATCATACAAAGAGGGCATTATACGGAGAGAAAAGCAGCTAAACTTGCAAAGATCATAGTTGGTGTTGTTGAAGCATGCCATTCCTTGGGTGTCATGCATCGAGACTTGAAGCCGGAGAACTTTTTTTTGTCAATCAAGAAGAGGAAGCGCCACTTAAGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

281

Amino Acids

30.87

Weight (kDa)

9.3

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	138 - 274	6.9e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	140 - 272	1e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38910
fragaria_vesca	FvH4_6g21020
malus_domestica	MD12G1046000.v1.1 MD14G1044700.v1.1
prunus_persica	Prupe.7G089600_v2.0.a1 Prupe.7G089600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477401
rosa_laevigata	RLG00000023725
rosa_multiflora	Rmu_ssc0000341.1_g000023
rosa_roxburghii	Rroxscaffold_6G00404200 Rroxscaffold_6G00404680 Rroxscaffold_6G00404690
rosa_rugosa	Rorug03G0160200 Rorug03G0160300 Rorug03G0160400
rosa_samantha	Rh3AG210700 Rh3CG237800 Rh3DG237500
rosa_wichuraiana	Rw3G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
AarI	CACCTGC	1 cut(s)	650
Acc16I	TGCGCA	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	650
AccB7I	CCANNNNNTGG	2 cut(s)	29, 766
AciI	CCGC	2 cut(s)	266, 632
AclWI	GGATC	3 cut(s)	173, 414, 689
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	29, 82, 766
AflII	CTTAAG	1 cut(s)	835
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	752, 790
AjnI	CCWGG	2 cut(s)	145, 303
AluBI	AGCT	5 cut(s)	329, 430, 520, 670, 719
AluI	AGCT	5 cut(s)	329, 430, 520, 670, 719
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	3 cut(s)	173, 414, 689
AoxI	GGCC	4 cut(s)	77, 300, 309, 439
ApeKI	GCWGC	2 cut(s)	329, 716
ApoI	RAATTY	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	659, 831
AspS9I	GGNCC	4 cut(s)	20, 88, 149, 301
AsuC2I	CCSGG	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	20, 88, 149
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	2 cut(s)	316, 728
BciT130I	CCWGG	2 cut(s)	147, 305
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	832
BfrI	CTTAAG	1 cut(s)	835
BfuAI	ACCTGC	1 cut(s)	650
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	2 cut(s)	330, 717
BlsI	GCNGC	2 cut(s)	331, 718
Bme1390I	CCNGG	3 cut(s)	76, 147, 305
Bme18I	GGWCC	3 cut(s)	20, 88, 149
BmgT120I	GGNCC	4 cut(s)	20, 88, 149, 301
BmiI	GGNNCC	2 cut(s)	201, 270
BmrFI	CCNGG	3 cut(s)	76, 147, 305
BmsI	GCATC	3 cut(s)	49, 580, 787
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	303, 765
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 82, 766
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	209, 397
Bse3DI	GCAATG	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	147, 305
BseDI	CCNNGG	2 cut(s)	303, 765
BseGI	GGATG	3 cut(s)	155, 541, 586
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	3 cut(s)	29, 82, 766
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	185, 219
BseNI	ACTGG	2 cut(s)	209, 397
BseRI	GAGGAG	3 cut(s)	90, 192, 195
BseXI	GCAGC	2 cut(s)	316, 728
BshFI	GGCC	4 cut(s)	79, 302, 311, 441
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	4 cut(s)	76, 83, 91, 794
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	3 cut(s)	29, 82, 766
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	4 cut(s)	79, 302, 311, 441
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	5 cut(s)	178, 250, 406, 681, 732
BspACI	CCGC	2 cut(s)	266, 632
BspANI	GGCC	4 cut(s)	79, 302, 311, 441
BspCNI	CTCAG	2 cut(s)	184, 220
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	201, 270
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	3 cut(s)	173, 414, 689
BspT104I	TTCGAA	1 cut(s)	140
BspTI	CTTAAG	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	209, 397
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	303, 765
BssMI	GATC	5 cut(s)	178, 250, 406, 681, 732
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	147, 305
Bst6I	CTCTTC	4 cut(s)	282, 335, 467, 815
BstAFI	CTTAAG	1 cut(s)	835
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	496, 668, 757
BstDEI	CTNAG	2 cut(s)	171, 228
BstF5I	GGATG	3 cut(s)	155, 541, 586
BstH2I	RGCGCY	1 cut(s)	832
BstHHI	GCGC	2 cut(s)	659, 831
BstKTI	GATC	5 cut(s)	181, 253, 409, 684, 735
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	5 cut(s)	178, 250, 406, 681, 732
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 308, 317, 326, 526, 663, 725
BstNI	CCWGG	2 cut(s)	147, 305
BstNSI	RCATGY	3 cut(s)	15, 498, 759
BstSCI	CCNGG	3 cut(s)	74, 145, 303
BstV1I	GCAGC	2 cut(s)	316, 728
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	4 cut(s)	79, 302, 311, 441
BtsCI	GGATG	3 cut(s)	155, 541, 586
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	3 cut(s)	496, 668, 757
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	2 cut(s)	659, 831
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	4 cut(s)	20, 88, 149, 301
CseI	GACGC	1 cut(s)	632
CviAII	CATG	7 cut(s)	12, 43, 495, 617, 638, 756, 775
DdeI	CTNAG	2 cut(s)	171, 228
DpnI	GATC	5 cut(s)	180, 252, 408, 683, 734
DpnII	GATC	5 cut(s)	178, 250, 406, 681, 732
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	4 cut(s)	282, 335, 467, 815
EarI	CTCTTC	4 cut(s)	282, 335, 467, 815
Eco130I	CCWWGG	1 cut(s)	765
Eco47I	GGWCC	3 cut(s)	20, 88, 149
EcoRII	CCWGG	2 cut(s)	145, 303
EcoT14I	CCWWGG	1 cut(s)	765
EcoT22I	ATGCAT	2 cut(s)	573, 780
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	7 cut(s)	15, 46, 498, 620, 641, 759, 778
FalI	AAGNNNNNCTT	1 cut(s)	818
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	7 cut(s)	11, 42, 494, 616, 637, 755, 774
FauNDI	CATATG	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	330, 717
FokI	GGATG	3 cut(s)	142, 548, 573
Fsp4HI	GCNGC	2 cut(s)	330, 717
FspI	TGCGCA	1 cut(s)	658
GlaI	GCGC	2 cut(s)	658, 830
GluI	GCNGC	2 cut(s)	330, 717
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	832
HaeIII	GGCC	4 cut(s)	79, 302, 311, 441
HapII	CCGG	4 cut(s)	76, 83, 91, 794
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	2 cut(s)	659, 831
Hin1II	CATG	7 cut(s)	15, 46, 498, 620, 641, 759, 778
Hin6I	GCGC	2 cut(s)	657, 829
HinP1I	GCGC	2 cut(s)	657, 829
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	131, 142, 371
HpaII	CCGG	4 cut(s)	76, 83, 91, 794
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	20, 261
Hpy188III	TCNNGA	5 cut(s)	191, 562, 617, 782, 817
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	107, 277, 378
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	8 cut(s)	46, 364, 494, 498, 509, 571, 728, 778
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 308, 317, 326, 526, 663, 725
HpyF3I	CTNAG	2 cut(s)	171, 228
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	7 cut(s)	15, 46, 498, 620, 641, 759, 778
HspAI	GCGC	2 cut(s)	657, 829
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	178, 250, 406, 681, 732
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	2 cut(s)	316, 728
LweI	GCATC	3 cut(s)	49, 580, 787
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	5 cut(s)	180, 252, 408, 683, 734
MboI	GATC	5 cut(s)	178, 250, 406, 681, 732
MboII	GAAGA	8 cut(s)	122, 299, 342, 352, 400, 484, 554, 832
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	4 cut(s)	136, 240, 443, 504
MlyI	GAGTC	2 cut(s)	125, 365
MmeI	TCCRAC	1 cut(s)	337
Mph1103I	ATGCAT	2 cut(s)	573, 780
MseI	TTAA	1 cut(s)	836
MspCI	CTTAAG	1 cut(s)	835
MspI	CCGG	4 cut(s)	76, 83, 91, 794
MspR9I	CCNGG	3 cut(s)	76, 147, 305
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	147, 305
MwoI	GCNNNNNNNGC	7 cut(s)	76, 308, 317, 326, 526, 663, 725
NciI	CCSGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	5 cut(s)	178, 250, 406, 681, 732
NlaIII	CATG	7 cut(s)	15, 46, 498, 620, 641, 759, 778
NlaIV	GGNNCC	2 cut(s)	201, 270
NmeAIII	GCCGAG	1 cut(s)	337
NsbI	TGCGCA	1 cut(s)	658
NsiI	ATGCAT	2 cut(s)	573, 780
NspI	RCATGY	3 cut(s)	15, 498, 759
NspV	TTCGAA	1 cut(s)	140
PaeI	GCATGC	2 cut(s)	498, 759
PagI	TCATGA	1 cut(s)	616
PaqCI	CACCTGC	1 cut(s)	650
PciI	ACATGT	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	2 cut(s)	29, 766
PkrI	GCNGC	2 cut(s)	331, 718
PleI	GAGTC	2 cut(s)	125, 365
PpsI	GAGTC	2 cut(s)	125, 365
PscI	ACATGT	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	145, 303
PspGI	CCWGG	2 cut(s)	145, 303
PspN4I	GGNNCC	2 cut(s)	201, 270
PspPI	GGNCC	4 cut(s)	20, 88, 149, 301
PsuI	RGATCY	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	836
SatI	GCNGC	2 cut(s)	330, 717
Sau3AI	GATC	5 cut(s)	178, 250, 406, 681, 732
Sau96I	GGNCC	4 cut(s)	20, 88, 149, 301
SchI	GAGTC	2 cut(s)	125, 365
ScrFI	CCNGG	3 cut(s)	76, 147, 305
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	49, 580, 787
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	3 cut(s)	20, 88, 149
SmlI	CTYRAG	1 cut(s)	835
SmoI	CTYRAG	1 cut(s)	835
SphI	GCATGC	2 cut(s)	498, 759
Sse9I	AATT	4 cut(s)	136, 240, 443, 504
SsiI	CCGC	2 cut(s)	266, 632
StyD4I	CCNGG	3 cut(s)	74, 145, 303
StyI	CCWWGG	1 cut(s)	765
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	3 cut(s)	140, 675, 781
TasI	AATT	4 cut(s)	136, 240, 443, 504
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	836
Tru9I	TTAA	1 cut(s)	836
TseI	GCWGC	2 cut(s)	329, 716
TspDTI	ATGAA	4 cut(s)	31, 123, 353, 626
TspGWI	ACGGA	3 cut(s)	40, 141, 719
Van91I	CCANNNNNTGG	2 cut(s)	29, 766
Vha464I	CTTAAG	1 cut(s)	835
VpaK11BI	GGWCC	3 cut(s)	20, 88, 149
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	3 cut(s)	15, 498, 759
Zsp2I	ATGCAT	2 cut(s)	573, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.