Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011633

Physical Location & Seq

Genomic Coordinates Forward (+)

27162757 .. 27165384

Gene Structure 2628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAGTACTTCGTGAGTGCAGACTTCTCTGCAATTTGGACTTCTTGGCACCCTTGGGTTCAGGTAGATGGTGTTGCTCCTGATAAACCTCTTGATTCTGCTGTCTTAACTCGCTTAAAGCAATTCTCGGCCATGAACAAGCTCAAGAAAATTGCCATCAGAGTAATTGCAGAAAGCCTGTCTGAAGAGGAAATAGCAGGGCTGAAGGAAATGTTCAAGATGATAGACACAGATAATAGTGGGCACATCACCCTTGAGGAACTAAAGACTGGTTTGGAAAGAGTGGGTGCTGATCTCAAGGATTCTGAAATCACTTGGTTAATGCAATCGGCCGATGTAGACAACAGTGGTACCATAGACTATGGTGAGTTCATAGCAGCAATGCTCCACCTGAACAAGGTCCAGAAGGAAGATCACCTGTTTGCAGCATTCTCATACTTTGACCAAGATGGAAGTGGGTACATTACTCGAGATGAGCTGCAACAGGCTTGTGAGAAGTTTGGTTTACAAGATGTGCAATTAGATGACATAATACGTGAAGTCGACCAGGATAATGATGGTCGCATTGATTATAGTGAATTCGTGGCCATGATGGAAGACACCGGTTTTGGCAAGGGATTACAAACAAACATGAGTAGTAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

215

Amino Acids

24.3

Weight (kDa)

4.53

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	67 - 128	1.6e-13	EF-hand domain pair
EF-hand_1	PF00036	68 - 94	4.2e-08	EF hand domain
EF-hand_6	PF13405	68 - 96	2.6e-07	EF-hand domain
EF-hand_5	PF13202	68 - 90	2.7e-06	EF hand
EF-hand_9	PF14658	70 - 128	9.5e-06	EF-hand domain
EF-hand_7	PF13499	137 - 198	1.4e-16	EF-hand domain pair
EF-hand_1	PF00036	141 - 166	7.1e-07	EF hand domain
EF-hand_6	PF13405	141 - 168	1.1e-07	EF-hand domain
EF-hand_8	PF13833	152 - 200	3.3e-09	EF-hand domain pair
EF-hand_1	PF00036	174 - 200	1.7e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38910
fragaria_vesca	FvH4_6g21020
malus_domestica	MD12G1046000.v1.1 MD14G1044700.v1.1
prunus_persica	Prupe.7G089600_v2.0.a1 Prupe.7G089600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477401
rosa_laevigata	RLG00000023725
rosa_multiflora	Rmu_ssc0000341.1_g000023
rosa_roxburghii	Rroxscaffold_6G00404200 Rroxscaffold_6G00404680 Rroxscaffold_6G00404690
rosa_rugosa	Rorug03G0160200 Rorug03G0160300 Rorug03G0160400
rosa_samantha	Rh3AG210700 Rh3CG237800 Rh3DG237500
rosa_wichuraiana	Rw3G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	48, 350
AccI	GTMKAC	2 cut(s)	339, 543
AcoI	YGGCCR	3 cut(s)	129, 330, 585
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	2 cut(s)	204, 224
AfaI	GTAC	3 cut(s)	8, 352, 461
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgeI	ACCGGT	1 cut(s)	602
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	2 cut(s)	142, 478
AluI	AGCT	2 cut(s)	142, 478
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	3 cut(s)	129, 330, 585
ApeKI	GCWGC	3 cut(s)	377, 425, 478
ApoI	RAATTY	1 cut(s)	578
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AsiGI	ACCGGT	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	241, 377, 407
AvaI	CYCGRG	1 cut(s)	468
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	246
BaeI	ACNNNNGTAYC	2 cut(s)	334, 367
BalI	TGGCCA	1 cut(s)	587
BanI	GGYRCC	2 cut(s)	48, 350
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	389, 437, 465
BccI	CCATC	5 cut(s)	62, 164, 443, 551, 586
BciT130I	CCWGG	1 cut(s)	548
BisI	GCNGC	3 cut(s)	378, 426, 479
BlsI	GCNGC	3 cut(s)	379, 427, 480
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	50, 352
BmrFI	CCNGG	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	603
BpuEI	CTTGAG	3 cut(s)	128, 275, 281
BsaAI	YACGTR	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	246
BseX3I	CGGCCG	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	389, 437, 465
BsgI	GTGCAG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	131, 332, 587
BshNI	GGYRCC	2 cut(s)	48, 350
BshTI	ACCGGT	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	131, 332, 587
BsoBI	CYCGRG	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	292, 412
BspANI	GGCC	3 cut(s)	131, 332, 587
BspLI	GGNNCC	2 cut(s)	50, 352
BspT107I	GGYRCC	2 cut(s)	48, 350
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	292, 412
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	536
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstKTI	GATC	2 cut(s)	295, 415
BstMBI	GATC	2 cut(s)	292, 412
BstMCI	CGRYCG	1 cut(s)	333
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	389, 437, 465
BstV2I	GAAGAC	1 cut(s)	603
BstZI	CGGCCG	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	131, 332, 587
BtsIMutI	CAGTG	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	7, 351, 460
CspAI	ACCGGT	1 cut(s)	602
CviAII	CATG	3 cut(s)	133, 589, 631
CviJI	RGCY	8 cut(s)	131, 142, 177, 202, 332, 478, 488, 587
CviKI_1	RGCY	8 cut(s)	131, 142, 177, 202, 332, 478, 488, 587
CviQI	GTAC	3 cut(s)	7, 351, 460
DpnI	GATC	2 cut(s)	294, 414
DpnII	GATC	2 cut(s)	292, 412
EaeI	YGGCCR	3 cut(s)	129, 330, 585
EagI	CGGCCG	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EclXI	CGGCCG	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	400
Eco52I	CGGCCG	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	204, 224
Eco88I	CYCGRG	1 cut(s)	468
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	136, 592, 634
FaiI	YATR	9 cut(s)	134, 356, 363, 374, 436, 530, 573, 590, 632
FatI	CATG	3 cut(s)	132, 588, 630
FblI	GTMKAC	2 cut(s)	339, 543
Fnu4HI	GCNGC	3 cut(s)	378, 426, 479
Fsp4HI	GCNGC	3 cut(s)	378, 426, 479
GluI	GCNGC	3 cut(s)	378, 426, 479
HaeIII	GGCC	3 cut(s)	131, 332, 587
HapII	CCGG	1 cut(s)	603
Hin1II	CATG	3 cut(s)	136, 592, 634
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	95, 302
HpaII	CCGG	1 cut(s)	603
HphI	GGTGA	3 cut(s)	241, 377, 407
Hpy166II	GTNNAC	3 cut(s)	340, 506, 544
Hpy188I	TCNGA	3 cut(s)	161, 184, 307
Hpy188III	TCNNGA	7 cut(s)	13, 80, 92, 145, 217, 403, 470
Hpy8I	GTNNAC	3 cut(s)	340, 506, 544
HpyAV	CCTTC	2 cut(s)	199, 400
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	7 cut(s)	20, 32, 170, 325, 425, 481, 517
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	3 cut(s)	136, 592, 634
KpnI	GGTACC	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	292, 412
LmnI	GCTCC	2 cut(s)	82, 390
Lsp1109I	GCAGC	3 cut(s)	389, 437, 465
MaeII	ACGT	1 cut(s)	535
MalI	GATC	2 cut(s)	294, 414
MboI	GATC	2 cut(s)	292, 412
MboII	GAAGA	3 cut(s)	197, 422, 608
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	6 cut(s)	33, 122, 150, 165, 518, 578
MluNI	TGGCCA	1 cut(s)	587
MnlI	CCTC	3 cut(s)	99, 181, 250
Mox20I	TGGCCA	1 cut(s)	587
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	3 cut(s)	107, 116, 320
Msp20I	TGGCCA	1 cut(s)	587
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	292, 412
NlaIII	CATG	3 cut(s)	136, 592, 634
NlaIV	GGNNCC	2 cut(s)	50, 352
NmeAIII	GCCGAG	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	468
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	95, 302
PinAI	ACCGGT	1 cut(s)	602
PkrI	GCNGC	3 cut(s)	379, 427, 480
Ppu21I	YACGTR	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	50, 352
PspPI	GGNCC	1 cut(s)	400
RsaI	GTAC	3 cut(s)	8, 352, 461
RsaNI	GTAC	3 cut(s)	7, 351, 460
SalI	GTCGAC	1 cut(s)	542
SaqAI	TTAA	3 cut(s)	107, 116, 320
SatI	GCNGC	3 cut(s)	378, 426, 479
Sau3AI	GATC	2 cut(s)	292, 412
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	66, 91, 144, 393, 402, 420, 480, 538
Sfr274I	CTCGAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	400
SlaI	CTCGAG	1 cut(s)	468
SmlI	CTYRAG	4 cut(s)	143, 254, 296, 468
SmoI	CTYRAG	4 cut(s)	143, 254, 296, 468
Sse9I	AATT	6 cut(s)	33, 122, 150, 165, 518, 578
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	2 cut(s)	469, 543
TasI	AATT	6 cut(s)	33, 122, 150, 165, 518, 578
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	95, 302
Tru1I	TTAA	3 cut(s)	107, 116, 320
Tru9I	TTAA	3 cut(s)	107, 116, 320
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	3 cut(s)	377, 425, 478
TspDTI	ATGAA	3 cut(s)	17, 149, 361
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	400
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	1 cut(s)	578
XcmI	CCANNNNNNNNNTGG	2 cut(s)	452, 554
XhoI	CTCGAG	1 cut(s)	468
XmiI	GTMKAC	2 cut(s)	339, 543
XmnI	GAANNNNTTC	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.