Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011633

Physical Location & Seq

Genomic Coordinates Reverse (-)

13288191 .. 13288658

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0160200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGGAGGAGACGGTGGCTCCTCCTGCACCTTTTGAGGAGGCTTTTGTGAGCCTTGTTGGAGGAGAAGATGCAATTCACGATTCGTTTTTCTACCTTTGTGGCCGGCTGTTGTCTAAGAAAGCGATGGTGATTCTGACGTTTTCGGCGGCGATCTCCAACGTGTGGGGGCTAAGGGAGAGAGTTTTGATCCGACAAGAGGAGGAGGAGGACATCTTCGTCTTCCAATTCAACGATAGGGCTGTGAAGGATCAGATTCTCCCAGGGGGTCCATGGTTTAACAACAATTTCATGTTGCTGCTGGCATACTATGACGGTGTTTCTGATCTCAAGGATGCTCCGCTGCACCTCCTTGAGGTATGGGTGGCGGTGAAGGGTTTGTGCATCTCTATGCGCAATGAAAAGGCTTTAACTTTGATCAGACGGGTGTTGGGGACCTTCGTTCGGGTTGATCAGGGAGCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

4.92

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38910
fragaria_vesca	FvH4_6g21020
malus_domestica	MD12G1046000.v1.1 MD14G1044700.v1.1
prunus_persica	Prupe.7G089600_v2.0.a1 Prupe.7G089600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477401
rosa_laevigata	RLG00000023725
rosa_multiflora	Rmu_ssc0000341.1_g000023
rosa_roxburghii	Rroxscaffold_6G00404200 Rroxscaffold_6G00404680 Rroxscaffold_6G00404690
rosa_rugosa	Rorug03G0160200 Rorug03G0160300 Rorug03G0160400
rosa_samantha	Rh3AG210700 Rh3CG237800 Rh3DG237500
rosa_wichuraiana	Rw3G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccBSI	CCGCTC	1 cut(s)	461
AciI	CCGC	5 cut(s)	5, 149, 341, 368, 461
AclWI	GGATC	2 cut(s)	184, 258
AcoI	YGGCCR	1 cut(s)	103
AfiI	CCNNNNNNNGG	4 cut(s)	165, 199, 355, 444
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	184, 258
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	298, 343
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	269, 435
AsuHPI	GGTGA	2 cut(s)	142, 382
AvaII	GGWCC	2 cut(s)	269, 435
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	285, 330
BccI	CCATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	2 cut(s)	417, 451
BcoDI	GTCTC	1 cut(s)	5
BisI	GCNGC	3 cut(s)	150, 299, 344
BlsI	GCNGC	3 cut(s)	151, 300, 345
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	2 cut(s)	269, 435
BmgT120I	GGNCC	2 cut(s)	269, 435
BmiI	GGNNCC	3 cut(s)	21, 270, 436
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	3 cut(s)	61, 325, 393
BpiI	GAAGAC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	314, 374
BsaJI	CCNNGG	3 cut(s)	262, 263, 272
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 199, 355, 444
Bse118I	RCCGGY	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	262, 263, 272
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	165, 199, 355, 444
BseMI	GCAATG	1 cut(s)	403
BseRI	GAGGAG	7 cut(s)	12, 23, 53, 78, 215, 218, 221
BseXI	GCAGC	2 cut(s)	285, 330
BsgI	GTGCAG	2 cut(s)	12, 329
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	4 cut(s)	165, 199, 355, 444
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	5 cut(s)	5, 149, 341, 368, 461
BspANI	GGCC	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	21, 270, 436
BspPI	GGATC	2 cut(s)	184, 258
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	262, 263, 272
BssMI	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	16, 317
BstC8I	GCNNGC	2 cut(s)	107, 303
BstDEI	CTNAG	2 cut(s)	117, 173
BstDSI	CCRYGG	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	6 cut(s)	156, 192, 253, 328, 420, 454
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	285, 330
BstV2I	GAAGAC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	272
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	107, 303
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	269, 435
CviAII	CATG	2 cut(s)	273, 292
CviJI	RGCY	8 cut(s)	20, 44, 54, 105, 109, 172, 242, 407
CviKI_1	RGCY	8 cut(s)	20, 44, 54, 105, 109, 172, 242, 407
DdeI	CTNAG	2 cut(s)	117, 173
DpnI	GATC	6 cut(s)	155, 191, 252, 327, 419, 453
DpnII	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	269, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	2 cut(s)	276, 295
FaiI	YATR	6 cut(s)	274, 293, 307, 312, 361, 392
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	272, 291
FbaI	TGATCA	2 cut(s)	417, 451
Fnu4HI	GCNGC	3 cut(s)	150, 299, 344
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	150, 299, 344
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	3 cut(s)	150, 299, 344
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	276, 295
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	83, 133, 256
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	142, 382
Hpy188I	TCNGA	5 cut(s)	138, 194, 255, 325, 422
Hpy188III	TCNNGA	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	241, 367, 448
HpyCH4III	ACNGT	2 cut(s)	16, 317
HpyCH4IV	ACGT	2 cut(s)	140, 162
HpyCH4V	TGCA	4 cut(s)	29, 74, 346, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	117, 173
HpySE526I	ACGT	2 cut(s)	140, 162
Hsp92II	CATG	2 cut(s)	276, 295
HspAI	GCGC	1 cut(s)	394
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	2 cut(s)	417, 451
Kzo9I	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
LmnI	GCTCC	3 cut(s)	25, 343, 458
LpnPI	CCDG	6 cut(s)	39, 119, 249, 276, 287, 440
Lsp1109I	GCAGC	2 cut(s)	285, 330
LweI	GCATC	3 cut(s)	61, 325, 393
MaeII	ACGT	2 cut(s)	140, 162
MalI	GATC	6 cut(s)	155, 191, 252, 327, 419, 453
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
MboII	GAAGA	3 cut(s)	80, 208, 214
MluCI	AATT	3 cut(s)	75, 227, 286
MmeI	TCCRAC	3 cut(s)	40, 183, 217
MroNI	GCCGGC	1 cut(s)	105
MseI	TTAA	2 cut(s)	279, 410
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	26
NaeI	GCCGGC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
NgoMIV	GCCGGC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	276, 295
NlaIV	GGNNCC	3 cut(s)	21, 270, 436
NsbI	TGCGCA	1 cut(s)	395
PasI	CCCWGGG	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	83, 133, 256
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	151, 300, 345
PpuMI	RGGWCCY	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	21, 270, 436
PspPI	GGNCC	2 cut(s)	269, 435
PspPPI	RGGWCCY	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	279, 410
SatI	GCNGC	3 cut(s)	150, 299, 344
Sau3AI	GATC	6 cut(s)	153, 189, 250, 325, 417, 451
Sau96I	GGNCC	2 cut(s)	269, 435
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	7 cut(s)	34, 99, 143, 165, 351, 360, 440
SfaNI	GCATC	3 cut(s)	61, 325, 393
SinI	GGWCC	2 cut(s)	269, 435
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	329, 353
SmoI	CTYRAG	2 cut(s)	329, 353
Sse9I	AATT	3 cut(s)	75, 227, 286
SsiI	CCGC	5 cut(s)	5, 149, 341, 368, 461
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	16, 317
TaiI	ACGT	2 cut(s)	143, 165
TasI	AATT	3 cut(s)	75, 227, 286
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	83, 133, 256
Tru1I	TTAA	2 cut(s)	279, 410
Tru9I	TTAA	2 cut(s)	279, 410
TseI	GCWGC	2 cut(s)	298, 343
TspDTI	ATGAA	2 cut(s)	280, 414
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	269, 435
XagI	CCTNNNNNAGG	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.